data_Y2A # _chem_comp.id Y2A _chem_comp.name "(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H9 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-28 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.103 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y2A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LIW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y2A CA C1 C 0 1 N N N 87.319 106.253 128.557 2.828 -0.962 -0.740 CA Y2A 1 Y2A CB C2 C 0 1 N N S 87.896 105.657 127.274 1.553 -0.442 -0.074 CB Y2A 2 Y2A OB1 O1 O 0 1 N N N 88.256 106.536 125.071 1.488 1.718 0.865 OB1 Y2A 3 Y2A OB2 O2 O 0 1 N N N 88.740 107.855 126.737 1.541 1.676 -1.344 OB2 Y2A 4 Y2A CG C3 C 0 1 N N N 89.134 104.821 127.576 0.331 -1.012 -0.798 CG Y2A 5 Y2A OG1 O3 O 0 1 N N N 90.550 106.333 128.675 -0.846 0.401 0.675 OG1 Y2A 6 Y2A OG2 O4 O 0 1 N N N 90.083 104.519 129.907 -2.123 -0.759 -0.706 OG2 Y2A 7 Y2A CAC C4 C 0 1 N N N 85.815 106.478 128.529 4.032 -0.401 -0.027 CAC Y2A 8 Y2A CBC C5 C 0 1 N N N 88.320 106.752 126.307 1.525 1.063 -0.149 CBC Y2A 9 Y2A CGC C6 C 0 1 N N N 89.974 105.304 128.754 -0.922 -0.404 -0.222 CGC Y2A 10 Y2A O1 O5 O 0 1 N N N 91.739 105.269 131.753 -4.738 -0.516 -0.836 O1 Y2A 11 Y2A O3 O6 O 0 1 N N N 89.589 104.395 132.422 -3.532 -0.523 1.501 O3 Y2A 12 Y2A O4 O7 O 0 1 N N N 89.667 106.581 131.438 -3.274 1.406 -0.106 O4 Y2A 13 Y2A OA1 O8 O 0 1 N N N 85.153 106.140 127.521 3.884 0.339 0.917 OA1 Y2A 14 Y2A OA2 O9 O 0 1 N N N 85.243 107.009 129.514 5.267 -0.723 -0.440 OA2 Y2A 15 Y2A OHB O10 O 0 1 N N N 86.929 104.858 126.662 1.529 -0.851 1.295 OHB Y2A 16 Y2A P P1 P 0 1 N N N 90.283 105.216 131.386 -3.414 -0.066 -0.038 P Y2A 17 Y2A H1 H1 H 0 1 N N N 87.548 105.568 129.387 2.849 -2.050 -0.686 H1 Y2A 18 Y2A H2 H2 H 0 1 N N N 87.808 107.222 128.735 2.847 -0.650 -1.784 H2 Y2A 19 Y2A H3 H3 H 0 1 N N N 88.968 108.415 126.004 1.521 2.643 -1.341 H3 Y2A 20 Y2A H4 H4 H 0 1 N N N 88.806 103.793 127.791 0.395 -0.775 -1.860 H4 Y2A 21 Y2A H5 H5 H 0 1 N N N 89.772 104.823 126.680 0.304 -2.093 -0.668 H5 Y2A 22 Y2A H6 H6 H 0 1 N N N 91.985 106.166 131.948 -5.556 -0.135 -0.487 H6 Y2A 23 Y2A H7 H7 H 0 1 N N N 88.933 104.925 132.860 -3.627 -1.478 1.621 H7 Y2A 24 Y2A H8 H8 H 0 1 N N N 84.313 107.084 129.338 6.008 -0.339 0.048 H8 Y2A 25 Y2A H9 H9 H 0 1 N N N 86.064 105.191 126.870 1.545 -1.810 1.419 H9 Y2A 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y2A OB1 CBC DOUB N N 1 Y2A CBC OB2 SING N N 2 Y2A CBC CB SING N N 3 Y2A OHB CB SING N N 4 Y2A CB CG SING N N 5 Y2A CB CA SING N N 6 Y2A OA1 CAC DOUB N N 7 Y2A CG CGC SING N N 8 Y2A CAC CA SING N N 9 Y2A CAC OA2 SING N N 10 Y2A OG1 CGC DOUB N N 11 Y2A CGC OG2 SING N N 12 Y2A OG2 P SING N N 13 Y2A P O4 DOUB N N 14 Y2A P O1 SING N N 15 Y2A P O3 SING N N 16 Y2A CA H1 SING N N 17 Y2A CA H2 SING N N 18 Y2A OB2 H3 SING N N 19 Y2A CG H4 SING N N 20 Y2A CG H5 SING N N 21 Y2A O1 H6 SING N N 22 Y2A O3 H7 SING N N 23 Y2A OA2 H8 SING N N 24 Y2A OHB H9 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y2A SMILES ACDLabs 12.01 "C(C(CC(=O)OP(O)(O)=O)(C(=O)O)O)C(O)=O" Y2A InChI InChI 1.03 "InChI=1S/C6H9O10P/c7-3(8)1-6(12,5(10)11)2-4(9)16-17(13,14)15/h12H,1-2H2,(H,7,8)(H,10,11)(H2,13,14,15)/t6-/m0/s1" Y2A InChIKey InChI 1.03 RAAPFOXFYNTKEB-LURJTMIESA-N Y2A SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@](O)(CC(=O)O[P](O)(O)=O)C(O)=O" Y2A SMILES CACTVS 3.385 "OC(=O)C[C](O)(CC(=O)O[P](O)(O)=O)C(O)=O" Y2A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C(=O)O)[C@](CC(=O)OP(=O)(O)O)(C(=O)O)O" Y2A SMILES "OpenEye OEToolkits" 2.0.7 "C(C(=O)O)C(CC(=O)OP(=O)(O)O)(C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y2A "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid" Y2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-oxidanyl-2-(2-oxidanylidene-2-phosphonooxy-ethyl)butanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y2A "Create component" 2021-01-28 RCSB Y2A "Initial release" 2021-05-19 RCSB ##