data_Y35 # _chem_comp.id Y35 _chem_comp.name "(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}[1,1'-biphenyl]-3-yl){4-[3-(aminomethyl)phenyl]piperidin-1-yl}[3,4-di(hydroxy-kappaO)phenyl]methanonato(2-)hydroxyborate(1-)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C44 H46 B N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2019-05-20 _chem_comp.pdbx_modified_date 2020-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 721.671 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y35 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6P0P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y35 O5 O1 O 0 1 N N N -16.470 13.686 -16.122 7.284 -2.851 1.669 O5 Y35 1 Y35 C30 C1 C 0 1 N N N -17.563 13.873 -15.596 7.118 -1.647 1.709 C30 Y35 2 Y35 N3 N1 N 0 1 N N N -18.169 12.861 -14.948 8.180 -0.818 1.677 N3 Y35 3 Y35 C35 C2 C 0 1 N N N -19.344 12.988 -14.087 7.992 0.637 1.605 C35 Y35 4 Y35 C34 C3 C 0 1 N N N -18.828 12.743 -12.664 8.792 1.179 0.416 C34 Y35 5 Y35 C33 C4 C 0 1 N N N -18.201 11.354 -12.519 10.252 0.740 0.545 C33 Y35 6 Y35 C36 C5 C 0 1 Y N N -17.720 11.130 -11.110 11.049 1.299 -0.605 C36 Y35 7 Y35 C42 C6 C 0 1 Y N N -18.637 10.592 -10.228 10.710 0.971 -1.904 C42 Y35 8 Y35 C41 C7 C 0 1 Y N N -18.313 10.358 -8.908 11.441 1.485 -2.959 C41 Y35 9 Y35 C40 C8 C 0 1 Y N N -17.059 10.653 -8.435 12.510 2.327 -2.715 C40 Y35 10 Y35 C38 C9 C 0 1 Y N N -16.118 11.197 -9.283 12.848 2.655 -1.415 C38 Y35 11 Y35 C39 C10 C 0 1 N N N -14.755 11.506 -8.698 14.014 3.572 -1.149 C39 Y35 12 Y35 N4 N2 N 0 1 N N N -13.708 10.961 -9.530 13.545 4.964 -1.118 N4 Y35 13 Y35 C37 C11 C 0 1 Y N N -16.445 11.438 -10.619 12.114 2.145 -0.360 C37 Y35 14 Y35 C32 C12 C 0 1 N N N -17.130 11.166 -13.601 10.330 -0.789 0.524 C32 Y35 15 Y35 C31 C13 C 0 1 N N N -17.650 11.508 -15.002 9.548 -1.353 1.720 C31 Y35 16 Y35 C28 C14 C 0 1 Y N N -18.134 15.279 -15.658 5.749 -1.092 1.788 C28 Y35 17 Y35 C27 C15 C 0 1 Y N N -17.272 16.295 -15.279 5.513 0.090 2.491 C27 Y35 18 Y35 C26 C16 C 0 1 Y N N -17.667 17.623 -15.285 4.235 0.609 2.564 C26 Y35 19 Y35 C25 C17 C 0 1 Y N N -18.948 17.954 -15.691 3.185 -0.039 1.943 C25 Y35 20 Y35 C29 C18 C 0 1 Y N N -19.437 15.614 -16.078 4.693 -1.746 1.155 C29 Y35 21 Y35 C24 C19 C 0 1 Y N N -19.848 16.968 -16.083 3.408 -1.220 1.237 C24 Y35 22 Y35 C22 C20 C 0 1 Y N N -21.203 17.499 -16.483 2.279 -1.911 0.567 C22 Y35 23 Y35 C21 C21 C 0 1 Y N N -21.219 18.759 -17.067 2.501 -3.089 -0.143 C21 Y35 24 Y35 C20 C22 C 0 1 Y N N -22.382 19.408 -17.482 1.446 -3.730 -0.760 C20 Y35 25 Y35 C19 C23 C 0 1 Y N N -23.582 18.776 -17.295 0.169 -3.204 -0.675 C19 Y35 26 Y35 C23 C24 C 0 1 Y N N -22.431 16.872 -16.283 0.990 -1.385 0.648 C23 Y35 27 Y35 C18 C25 C 0 1 Y N N -23.603 17.519 -16.704 -0.057 -2.034 0.027 C18 Y35 28 Y35 B B1 B -1 1 N N N -24.923 16.876 -16.501 -1.496 -1.449 0.117 B Y35 29 Y35 O3 O2 O 0 1 N N N -24.604 15.899 -15.387 -1.662 -0.776 1.296 O3 Y35 30 Y35 O4 O3 O 0 1 N N N -25.263 16.290 -17.757 -2.427 -2.457 0.009 O4 Y35 31 Y35 C16 C26 C 0 1 Y N N -26.441 16.894 -18.100 -3.505 -1.905 -0.618 C16 Y35 32 Y35 C15 C27 C 0 1 Y N N -27.286 16.634 -19.153 -4.824 -2.288 -0.731 C15 Y35 33 Y35 O2 O4 O 0 1 N N N -25.784 17.991 -16.205 -1.735 -0.610 -0.947 O2 Y35 34 Y35 C17 C28 C 0 1 Y N N -26.776 17.953 -17.142 -3.063 -0.727 -1.227 C17 Y35 35 Y35 C43 C29 C 0 1 Y N N -27.939 18.704 -17.280 -3.948 0.059 -1.946 C43 Y35 36 Y35 C44 C30 C 0 1 Y N N -28.774 18.419 -18.372 -5.269 -0.318 -2.063 C44 Y35 37 Y35 C14 C31 C 0 1 Y N N -28.450 17.401 -19.269 -5.717 -1.494 -1.457 C14 Y35 38 Y35 C13 C32 C 0 1 N N N -29.323 17.082 -20.438 -7.131 -1.899 -1.584 C13 Y35 39 Y35 O1 O5 O 0 1 N N N -30.507 16.856 -20.286 -7.424 -3.078 -1.629 O1 Y35 40 Y35 N2 N3 N 0 1 N N N -28.734 17.051 -21.633 -8.097 -0.961 -1.649 N2 Y35 41 Y35 C10 C33 C 0 1 N N N -27.474 17.736 -21.875 -7.772 0.461 -1.477 C10 Y35 42 Y35 C9 C34 C 0 1 N N N -27.878 18.915 -22.746 -8.667 1.042 -0.377 C9 Y35 43 Y35 C11 C35 C 0 1 N N N -29.297 16.385 -22.794 -9.494 -1.342 -1.900 C11 Y35 44 Y35 C12 C36 C 0 1 N N N -29.721 17.519 -23.730 -10.373 -0.745 -0.796 C12 Y35 45 Y35 C8 C37 C 0 1 N N N -28.519 18.401 -24.041 -10.133 0.769 -0.721 C8 Y35 46 Y35 C6 C38 C 0 1 Y N N -28.879 19.527 -24.941 -11.021 1.366 0.340 C6 Y35 47 Y35 C7 C39 C 0 1 Y N N -30.100 20.173 -24.844 -11.947 2.335 0.002 C7 Y35 48 Y35 C5 C40 C 0 1 Y N N -27.960 19.929 -25.904 -10.913 0.940 1.651 C5 Y35 49 Y35 C4 C41 C 0 1 Y N N -28.259 20.973 -26.765 -11.732 1.483 2.624 C4 Y35 50 Y35 C3 C42 C 0 1 Y N N -29.474 21.620 -26.666 -12.658 2.452 2.285 C3 Y35 51 Y35 C2 C43 C 0 1 Y N N -30.391 21.222 -25.705 -12.761 2.883 0.976 C2 Y35 52 Y35 C1 C44 C 0 1 N N N -31.708 21.953 -25.610 -13.770 3.940 0.607 C1 Y35 53 Y35 N1 N4 N 0 1 N N N -32.730 21.175 -26.262 -13.158 5.268 0.737 N1 Y35 54 Y35 H1 H1 H 0 1 N N N -19.777 13.995 -14.172 6.935 0.863 1.467 H1 Y35 55 Y35 H2 H2 H 0 1 N N N -20.103 12.238 -14.357 8.349 1.098 2.526 H2 Y35 56 Y35 H3 H3 H 0 1 N N N -18.070 13.503 -12.424 8.375 0.787 -0.512 H3 Y35 57 Y35 H4 H4 H 0 1 N N N -19.669 12.829 -11.960 8.739 2.268 0.407 H4 Y35 58 Y35 H5 H5 H 0 1 N N N -18.994 10.618 -12.717 10.661 1.111 1.485 H5 Y35 59 Y35 H6 H6 H 0 1 N N N -19.629 10.349 -10.580 9.875 0.314 -2.095 H6 Y35 60 Y35 H7 H7 H 0 1 N N N -19.052 9.939 -8.241 11.177 1.228 -3.975 H7 Y35 61 Y35 H8 H8 H 0 1 N N N -16.810 10.460 -7.402 13.082 2.727 -3.539 H8 Y35 62 Y35 H9 H9 H 0 1 N N N -14.685 11.064 -7.693 14.463 3.319 -0.188 H9 Y35 63 Y35 H10 H10 H 0 1 N N N -14.630 12.597 -8.629 14.756 3.456 -1.939 H10 Y35 64 Y35 H11 H11 H 0 1 N N N -12.817 11.175 -9.129 12.810 5.083 -0.437 H11 Y35 65 Y35 H12 H12 H 0 1 N N N -13.815 9.969 -9.594 14.308 5.599 -0.940 H12 Y35 66 Y35 H14 H14 H 0 1 N N N -15.707 11.866 -11.281 12.376 2.405 0.655 H14 Y35 67 Y35 H15 H15 H 0 1 N N N -16.800 10.117 -13.593 9.899 -1.162 -0.405 H15 Y35 68 Y35 H16 H16 H 0 1 N N N -16.277 11.821 -13.371 11.373 -1.100 0.592 H16 Y35 69 Y35 H17 H17 H 0 1 N N N -18.449 10.809 -15.288 10.029 -1.051 2.650 H17 Y35 70 Y35 H18 H18 H 0 1 N N N -16.831 11.448 -15.733 9.517 -2.440 1.658 H18 Y35 71 Y35 H19 H19 H 0 1 N N N -16.267 16.046 -14.971 6.330 0.600 2.978 H19 Y35 72 Y35 H20 H20 H 0 1 N N N -16.979 18.396 -14.975 4.056 1.523 3.109 H20 Y35 73 Y35 H21 H21 H 0 1 N N N -19.253 18.990 -15.704 2.187 0.371 2.004 H21 Y35 74 Y35 H22 H22 H 0 1 N N N -20.120 14.840 -16.395 4.871 -2.659 0.606 H22 Y35 75 Y35 H23 H23 H 0 1 N N N -20.276 19.266 -17.208 3.497 -3.500 -0.209 H23 Y35 76 Y35 H24 H24 H 0 1 N N N -22.337 20.385 -17.940 1.617 -4.643 -1.310 H24 Y35 77 Y35 H25 H25 H 0 1 N N N -24.502 19.250 -17.604 -0.654 -3.709 -1.160 H25 Y35 78 Y35 H26 H26 H 0 1 N N N -22.480 15.902 -15.811 0.812 -0.475 1.201 H26 Y35 79 Y35 H28 H28 H 0 1 N N N -27.058 15.860 -19.870 -5.166 -3.198 -0.261 H28 Y35 80 Y35 H29 H29 H 0 1 N N N -28.191 19.479 -16.572 -3.603 0.969 -2.415 H29 Y35 81 Y35 H30 H30 H 0 1 N N N -29.676 18.994 -18.519 -5.958 0.296 -2.624 H30 Y35 82 Y35 H31 H31 H 0 1 N N N -26.765 17.081 -22.402 -6.726 0.565 -1.190 H31 Y35 83 Y35 H32 H32 H 0 1 N N N -27.024 18.079 -20.931 -7.948 0.992 -2.413 H32 Y35 84 Y35 H33 H33 H 0 1 N N N -26.987 19.512 -22.990 -8.423 0.572 0.576 H33 Y35 85 Y35 H34 H34 H 0 1 N N N -28.601 19.541 -22.203 -8.503 2.117 -0.306 H34 Y35 86 Y35 H35 H35 H 0 1 N N N -30.166 15.775 -22.507 -9.810 -0.954 -2.868 H35 Y35 87 Y35 H36 H36 H 0 1 N N N -28.543 15.746 -23.277 -9.583 -2.428 -1.894 H36 Y35 88 Y35 H37 H37 H 0 1 N N N -30.502 18.122 -23.244 -11.422 -0.938 -1.022 H37 Y35 89 Y35 H38 H38 H 0 1 N N N -30.115 17.094 -24.665 -10.116 -1.201 0.160 H38 Y35 90 Y35 H39 H39 H 0 1 N N N -27.772 17.778 -24.555 -10.365 1.222 -1.685 H39 Y35 91 Y35 H40 H40 H 0 1 N N N -30.822 19.862 -24.103 -12.034 2.664 -1.023 H40 Y35 92 Y35 H41 H41 H 0 1 N N N -27.008 19.425 -25.981 -10.190 0.183 1.915 H41 Y35 93 Y35 H42 H42 H 0 1 N N N -27.542 21.280 -27.512 -11.651 1.147 3.647 H42 Y35 94 Y35 H43 H43 H 0 1 N N N -29.710 22.434 -27.335 -13.297 2.877 3.045 H43 Y35 95 Y35 H44 H44 H 0 1 N N N -31.621 22.933 -26.102 -14.095 3.788 -0.423 H44 Y35 96 Y35 H45 H45 H 0 1 N N N -31.974 22.097 -24.552 -14.630 3.869 1.273 H45 Y35 97 Y35 H46 H46 H 0 1 N N N -33.605 21.656 -26.202 -12.321 5.337 0.178 H46 Y35 98 Y35 H47 H47 H 0 1 N N N -32.487 21.045 -27.223 -13.815 5.995 0.495 H47 Y35 99 Y35 H13 H13 H 0 1 N N N -24.391 16.379 -14.595 -2.541 -0.389 1.407 H13 Y35 100 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y35 C4 C3 DOUB Y N 1 Y35 C4 C5 SING Y N 2 Y35 C3 C2 SING Y N 3 Y35 N1 C1 SING N N 4 Y35 C5 C6 DOUB Y N 5 Y35 C2 C1 SING N N 6 Y35 C2 C7 DOUB Y N 7 Y35 C6 C7 SING Y N 8 Y35 C6 C8 SING N N 9 Y35 C8 C12 SING N N 10 Y35 C8 C9 SING N N 11 Y35 C12 C11 SING N N 12 Y35 C11 N2 SING N N 13 Y35 C9 C10 SING N N 14 Y35 C10 N2 SING N N 15 Y35 N2 C13 SING N N 16 Y35 C13 O1 DOUB N N 17 Y35 C13 C14 SING N N 18 Y35 C14 C15 DOUB Y N 19 Y35 C14 C44 SING Y N 20 Y35 C15 C16 SING Y N 21 Y35 C44 C43 DOUB Y N 22 Y35 C16 O4 SING N N 23 Y35 C16 C17 DOUB Y N 24 Y35 O4 B SING N N 25 Y35 C20 C19 DOUB Y N 26 Y35 C20 C21 SING Y N 27 Y35 C19 C18 SING Y N 28 Y35 C43 C17 SING Y N 29 Y35 C17 O2 SING N N 30 Y35 C21 C22 DOUB Y N 31 Y35 C18 B SING N N 32 Y35 C18 C23 DOUB Y N 33 Y35 B O2 SING N N 34 Y35 B O3 SING N N 35 Y35 C22 C23 SING Y N 36 Y35 C22 C24 SING N N 37 Y35 O5 C30 DOUB N N 38 Y35 C24 C29 DOUB Y N 39 Y35 C24 C25 SING Y N 40 Y35 C29 C28 SING Y N 41 Y35 C25 C26 DOUB Y N 42 Y35 C28 C30 SING N N 43 Y35 C28 C27 DOUB Y N 44 Y35 C30 N3 SING N N 45 Y35 C26 C27 SING Y N 46 Y35 C31 N3 SING N N 47 Y35 C31 C32 SING N N 48 Y35 N3 C35 SING N N 49 Y35 C35 C34 SING N N 50 Y35 C32 C33 SING N N 51 Y35 C34 C33 SING N N 52 Y35 C33 C36 SING N N 53 Y35 C36 C37 DOUB Y N 54 Y35 C36 C42 SING Y N 55 Y35 C37 C38 SING Y N 56 Y35 C42 C41 DOUB Y N 57 Y35 N4 C39 SING N N 58 Y35 C38 C39 SING N N 59 Y35 C38 C40 DOUB Y N 60 Y35 C41 C40 SING Y N 61 Y35 C35 H1 SING N N 62 Y35 C35 H2 SING N N 63 Y35 C34 H3 SING N N 64 Y35 C34 H4 SING N N 65 Y35 C33 H5 SING N N 66 Y35 C42 H6 SING N N 67 Y35 C41 H7 SING N N 68 Y35 C40 H8 SING N N 69 Y35 C39 H9 SING N N 70 Y35 C39 H10 SING N N 71 Y35 N4 H11 SING N N 72 Y35 N4 H12 SING N N 73 Y35 C37 H14 SING N N 74 Y35 C32 H15 SING N N 75 Y35 C32 H16 SING N N 76 Y35 C31 H17 SING N N 77 Y35 C31 H18 SING N N 78 Y35 C27 H19 SING N N 79 Y35 C26 H20 SING N N 80 Y35 C25 H21 SING N N 81 Y35 C29 H22 SING N N 82 Y35 C21 H23 SING N N 83 Y35 C20 H24 SING N N 84 Y35 C19 H25 SING N N 85 Y35 C23 H26 SING N N 86 Y35 C15 H28 SING N N 87 Y35 C43 H29 SING N N 88 Y35 C44 H30 SING N N 89 Y35 C10 H31 SING N N 90 Y35 C10 H32 SING N N 91 Y35 C9 H33 SING N N 92 Y35 C9 H34 SING N N 93 Y35 C11 H35 SING N N 94 Y35 C11 H36 SING N N 95 Y35 C12 H37 SING N N 96 Y35 C12 H38 SING N N 97 Y35 C8 H39 SING N N 98 Y35 C7 H40 SING N N 99 Y35 C5 H41 SING N N 100 Y35 C4 H42 SING N N 101 Y35 C3 H43 SING N N 102 Y35 C1 H44 SING N N 103 Y35 C1 H45 SING N N 104 Y35 N1 H46 SING N N 105 Y35 N1 H47 SING N N 106 Y35 O3 H13 SING N N 107 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y35 SMILES ACDLabs 12.01 "O=C(N2CCC(c1cc(ccc1)CN)CC2)c3cccc(c3)c4cc(ccc4)[B-]5(Oc6c(O5)cc(cc6)C(=O)N7CCC(CC7)c8cc(ccc8)CN)O" Y35 InChI InChI 1.03 "InChI=1S/C44H46BN4O5/c46-28-30-5-1-7-34(23-30)32-15-19-48(20-16-32)43(50)38-11-3-9-36(25-38)37-10-4-12-40(26-37)45(52)53-41-14-13-39(27-42(41)54-45)44(51)49-21-17-33(18-22-49)35-8-2-6-31(24-35)29-47/h1-14,23-27,32-33,52H,15-22,28-29,46-47H2/q-1/t45-/m1/s1" Y35 InChIKey InChI 1.03 BXWXLCXUQLTPFH-WBVITSLISA-N Y35 SMILES_CANONICAL CACTVS 3.385 "NCc1cccc(c1)[C@H]2CCN(CC2)C(=O)c3cccc(c3)c4cccc(c4)[B-]5(O)Oc6ccc(cc6O5)C(=O)N7CC[C@@H](CC7)c8cccc(CN)c8" Y35 SMILES CACTVS 3.385 "NCc1cccc(c1)[CH]2CCN(CC2)C(=O)c3cccc(c3)c4cccc(c4)[B-]5(O)Oc6ccc(cc6O5)C(=O)N7CC[CH](CC7)c8cccc(CN)c8" Y35 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1(Oc2ccc(cc2O1)C(=O)N3CCC(CC3)c4cccc(c4)CN)(c5cccc(c5)c6cccc(c6)C(=O)N7CCC(CC7)c8cccc(c8)CN)O" Y35 SMILES "OpenEye OEToolkits" 2.0.7 "[B-]1(Oc2ccc(cc2O1)C(=O)N3CCC(CC3)c4cccc(c4)CN)(c5cccc(c5)c6cccc(c6)C(=O)N7CCC(CC7)c8cccc(c8)CN)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y35 "SYSTEMATIC NAME" ACDLabs 12.01 "(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}[1,1'-biphenyl]-3-yl){4-[3-(aminomethyl)phenyl]piperidin-1-yl}[3,4-di(hydroxy-kappaO)phenyl]methanonato(2-)hydroxyborate(1-)" Y35 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-[3-(aminomethyl)phenyl]piperidin-1-yl]-[3-[3-[3-[4-[3-(aminomethyl)phenyl]piperidin-1-yl]carbonyl-8-oxidanyl-7,9-dioxa-8-boranuidabicyclo[4.3.0]nona-1(6),2,4-trien-8-yl]phenyl]phenyl]methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y35 "Create component" 2019-05-20 RCSB Y35 "Initial release" 2020-03-25 RCSB ##