data_Y4P # _chem_comp.id Y4P _chem_comp.name "(1R,2S)-2-((S)-2-(((((1R,2S,4S)-bicyclo[2.2.1]heptan-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H37 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-03 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y4P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LKS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y4P C11 C1 C 0 1 N N S 8.986 19.765 27.710 3.110 0.296 -1.067 C11 Y4P 1 Y4P C12 C2 C 0 1 N N N 7.984 19.671 26.475 4.167 1.049 -0.257 C12 Y4P 2 Y4P C13 C3 C 0 1 N N S 7.596 21.032 25.901 3.598 2.396 0.196 C13 Y4P 3 Y4P C14 C4 C 0 1 N N N 6.615 20.973 24.729 4.622 3.157 1.009 C14 Y4P 4 Y4P C16 C5 C 0 1 N N N 5.750 22.651 26.161 3.706 4.698 -0.468 C16 Y4P 5 Y4P C17 C6 C 0 1 N N N 6.869 21.945 26.900 3.329 3.307 -1.025 C17 Y4P 6 Y4P C19 C7 C 0 1 N N R 9.208 18.357 28.309 3.721 -0.988 -1.633 C19 Y4P 7 Y4P C23 C8 C 0 1 N N N 9.764 25.809 25.213 -5.101 0.804 0.115 C23 Y4P 8 Y4P C02 C9 C 0 1 N N N 10.987 24.021 25.981 -2.784 0.233 0.048 C02 Y4P 9 Y4P C04 C10 C 0 1 N N S 12.073 22.193 27.169 -0.438 -0.412 0.177 C04 Y4P 10 Y4P C05 C11 C 0 1 N N N 13.182 21.971 28.198 -0.414 -1.840 0.724 C05 Y4P 11 Y4P C06 C12 C 0 1 N N N 14.560 22.436 27.746 0.727 -1.981 1.734 C06 Y4P 12 Y4P C07 C13 C 0 1 N N N 15.026 21.666 26.527 0.428 -1.120 2.963 C07 Y4P 13 Y4P C08 C14 C 0 1 N N N 15.592 22.325 28.902 0.856 -3.445 2.157 C08 Y4P 14 Y4P C09 C15 C 0 1 N N N 10.718 21.635 27.621 0.748 -0.200 -0.728 C09 Y4P 15 Y4P C24 C16 C 0 1 N N S 10.022 27.345 25.423 -6.318 0.849 -0.811 C24 Y4P 16 Y4P C25 C17 C 0 1 N N R 8.805 28.246 25.350 -7.530 1.505 -0.083 C25 Y4P 17 Y4P C26 C18 C 0 1 N N N 7.983 27.880 24.110 -7.586 0.794 1.303 C26 Y4P 18 Y4P C27 C19 C 0 1 N N N 8.910 28.122 22.993 -8.053 -0.645 0.986 C27 Y4P 19 Y4P C28 C20 C 0 1 N N S 10.089 28.867 23.614 -8.236 -0.668 -0.562 C28 Y4P 20 Y4P C29 C21 C 0 1 N N N 9.483 29.543 24.856 -8.726 0.817 -0.833 C29 Y4P 21 Y4P C30 C22 C 0 1 N N N 10.961 27.826 24.318 -6.790 -0.584 -1.149 C30 Y4P 22 Y4P N03 N1 N 0 1 N N N 11.930 23.610 26.860 -1.674 -0.200 -0.581 N03 Y4P 23 Y4P N10 N2 N 0 1 N N N 10.292 20.344 27.303 1.979 -0.042 -0.200 N10 Y4P 24 Y4P N15 N3 N 0 1 N N N 5.597 21.892 24.913 4.665 4.440 0.613 N15 Y4P 25 Y4P O01 O1 O 0 1 N N N 10.288 23.326 25.247 -2.738 0.535 1.224 O01 Y4P 26 Y4P O18 O2 O 0 1 N N N 6.755 20.212 23.787 5.304 2.678 1.890 O18 Y4P 27 Y4P O20 O3 O 0 1 N N N 10.067 18.538 29.449 2.771 -1.632 -2.484 O20 Y4P 28 Y4P O21 O4 O 0 1 N N N 9.978 22.362 28.274 0.597 -0.172 -1.931 O21 Y4P 29 Y4P O22 O5 O 0 1 N N N 10.798 25.362 25.912 -3.945 0.331 -0.626 O22 Y4P 30 Y4P H1 H1 H 0 1 N N N 8.524 20.405 28.476 2.764 0.925 -1.887 H1 Y4P 31 Y4P H2 H2 H 0 1 N N N 7.069 19.159 26.807 4.443 0.459 0.617 H2 Y4P 32 Y4P H3 H3 H 0 1 N N N 8.465 19.082 25.680 5.048 1.216 -0.876 H3 Y4P 33 Y4P H4 H4 H 0 1 N N N 8.510 21.543 25.565 2.684 2.249 0.771 H4 Y4P 34 Y4P H5 H5 H 0 1 N N N 6.022 23.696 25.950 4.169 5.303 -1.247 H5 Y4P 35 Y4P H6 H6 H 0 1 N N N 4.820 22.626 26.748 2.821 5.200 -0.076 H6 Y4P 36 Y4P H7 H7 H 0 1 N N N 6.452 21.343 27.721 3.971 3.036 -1.863 H7 Y4P 37 Y4P H8 H8 H 0 1 N N N 7.572 22.686 27.309 2.279 3.274 -1.312 H8 Y4P 38 Y4P S1 S1 S 0 1 N Y N 9.660 17.705 27.591 4.162 -2.100 -0.269 S1 Y4P 39 Y4P H10 H10 H 0 1 N N N 8.229 18.015 28.677 4.615 -0.743 -2.206 H10 Y4P 40 Y4P H11 H11 H 0 1 N N N 8.802 25.485 25.635 -4.900 1.804 0.501 H11 Y4P 41 Y4P H12 H12 H 0 1 N N N 9.817 25.517 24.154 -5.301 0.128 0.946 H12 Y4P 42 Y4P H13 H13 H 0 1 N N N 12.361 21.662 26.250 -0.394 0.295 1.005 H13 Y4P 43 Y4P H14 H14 H 0 1 N N N 12.917 22.520 29.114 -1.363 -2.057 1.215 H14 Y4P 44 Y4P H15 H15 H 0 1 N N N 13.237 20.895 28.418 -0.261 -2.541 -0.097 H15 Y4P 45 Y4P H16 H16 H 0 1 N N N 14.485 23.498 27.469 1.659 -1.651 1.276 H16 Y4P 46 Y4P H17 H17 H 0 1 N N N 16.022 22.024 26.225 -0.467 -1.493 3.460 H17 Y4P 47 Y4P H18 H18 H 0 1 N N N 15.079 20.594 26.769 1.272 -1.165 3.651 H18 Y4P 48 Y4P H19 H19 H 0 1 N N N 14.315 21.821 25.702 0.268 -0.087 2.653 H19 Y4P 49 Y4P H20 H20 H 0 1 N N N 15.230 22.891 29.773 1.069 -4.059 1.281 H20 Y4P 50 Y4P H21 H21 H 0 1 N N N 15.719 21.268 29.179 1.669 -3.545 2.876 H21 Y4P 51 Y4P H22 H22 H 0 1 N N N 16.557 22.736 28.572 -0.077 -3.775 2.614 H22 Y4P 52 Y4P H23 H23 H 0 1 N N N 10.515 27.484 26.396 -6.080 1.396 -1.723 H23 Y4P 53 Y4P H24 H24 H 0 1 N N N 8.231 28.346 26.283 -7.540 2.595 -0.061 H24 Y4P 54 Y4P H25 H25 H 0 1 N N N 7.093 28.520 24.027 -6.597 0.780 1.763 H25 Y4P 55 Y4P H26 H26 H 0 1 N N N 7.674 26.825 24.142 -8.301 1.292 1.957 H26 Y4P 56 Y4P H27 H27 H 0 1 N N N 8.429 28.736 22.218 -7.291 -1.363 1.289 H27 Y4P 57 Y4P H28 H28 H 0 1 N N N 9.242 27.170 22.553 -8.998 -0.860 1.484 H28 Y4P 58 Y4P H29 H29 H 0 1 N N N 10.627 29.543 22.933 -8.859 -1.470 -0.957 H29 Y4P 59 Y4P H30 H30 H 0 1 N N N 10.240 29.931 25.553 -9.681 1.027 -0.352 H30 Y4P 60 Y4P H31 H31 H 0 1 N N N 8.767 30.342 24.611 -8.749 1.053 -1.897 H31 Y4P 61 Y4P H32 H32 H 0 1 N N N 11.236 27.006 23.639 -6.807 -0.754 -2.226 H32 Y4P 62 Y4P H33 H33 H 0 1 N N N 11.873 28.280 24.734 -6.139 -1.307 -0.659 H33 Y4P 63 Y4P H34 H34 H 0 1 N N N 12.530 24.280 27.298 -1.693 -0.370 -1.536 H34 Y4P 64 Y4P H35 H35 H 0 1 N N N 10.908 19.770 26.764 2.115 -0.153 0.754 H35 Y4P 65 Y4P H36 H36 H 0 1 N N N 4.843 22.024 24.270 5.255 5.111 0.993 H36 Y4P 66 Y4P H37 H37 H 0 1 N N N 10.235 17.696 29.856 1.948 -1.879 -2.040 H37 Y4P 67 Y4P O1 O6 O 0 1 N Y N ? ? ? 5.243 -1.563 0.481 O1 Y4P 68 Y4P O2 O7 O 0 1 N Y N ? ? ? 2.993 -2.587 0.375 O2 Y4P 69 Y4P O3 O8 O 0 1 N Y N ? ? ? 4.751 -3.325 -0.953 O3 Y4P 70 Y4P H9 H9 H 0 1 N Y N ? ? ? 5.037 -4.017 -0.342 H9 Y4P 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y4P C27 C28 SING N N 1 Y4P C27 C26 SING N N 2 Y4P C28 C30 SING N N 3 Y4P C28 C29 SING N N 4 Y4P O18 C14 DOUB N N 5 Y4P C26 C25 SING N N 6 Y4P C30 C24 SING N N 7 Y4P C14 N15 SING N N 8 Y4P C14 C13 SING N N 9 Y4P C29 C25 SING N N 10 Y4P N15 C16 SING N N 11 Y4P C23 C24 SING N N 12 Y4P C23 O22 SING N N 13 Y4P O01 C02 DOUB N N 14 Y4P C25 C24 SING N N 15 Y4P C13 C12 SING N N 16 Y4P C13 C17 SING N N 17 Y4P O22 C02 SING N N 18 Y4P C02 N03 SING N N 19 Y4P C16 C17 SING N N 20 Y4P C12 C11 SING N N 21 Y4P C07 C06 SING N N 22 Y4P N03 C04 SING N N 23 Y4P C04 C09 SING N N 24 Y4P C04 C05 SING N N 25 Y4P N10 C09 SING N N 26 Y4P N10 C11 SING N N 27 Y4P C09 O21 DOUB N N 28 Y4P C11 C19 SING N N 29 Y4P C06 C05 SING N N 30 Y4P C06 C08 SING N N 31 Y4P C19 O20 SING N N 32 Y4P C11 H1 SING N N 33 Y4P C12 H2 SING N N 34 Y4P C12 H3 SING N N 35 Y4P C13 H4 SING N N 36 Y4P C16 H5 SING N N 37 Y4P C16 H6 SING N N 38 Y4P C17 H7 SING N N 39 Y4P C17 H8 SING N N 40 Y4P C19 S1 SING N N 41 Y4P C19 H10 SING N N 42 Y4P C23 H11 SING N N 43 Y4P C23 H12 SING N N 44 Y4P C04 H13 SING N N 45 Y4P C05 H14 SING N N 46 Y4P C05 H15 SING N N 47 Y4P C06 H16 SING N N 48 Y4P C07 H17 SING N N 49 Y4P C07 H18 SING N N 50 Y4P C07 H19 SING N N 51 Y4P C08 H20 SING N N 52 Y4P C08 H21 SING N N 53 Y4P C08 H22 SING N N 54 Y4P C24 H23 SING N N 55 Y4P C25 H24 SING N N 56 Y4P C26 H25 SING N N 57 Y4P C26 H26 SING N N 58 Y4P C27 H27 SING N N 59 Y4P C27 H28 SING N N 60 Y4P C28 H29 SING N N 61 Y4P C29 H30 SING N N 62 Y4P C29 H31 SING N N 63 Y4P C30 H32 SING N N 64 Y4P C30 H33 SING N N 65 Y4P N03 H34 SING N N 66 Y4P N10 H35 SING N N 67 Y4P N15 H36 SING N N 68 Y4P O20 H37 SING N N 69 Y4P S1 O1 DOUB N N 70 Y4P S1 O2 DOUB N N 71 Y4P S1 O3 SING N N 72 Y4P O3 H9 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y4P InChI InChI 1.03 "InChI=1S/C22H37N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h12-18,21,28H,3-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21+/m0/s1" Y4P InChIKey InChI 1.03 CDEICDIJDMTLMS-NFFJHMNLSA-N Y4P SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@H]2CC[C@@H]1C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" Y4P SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC[CH]1C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" Y4P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@H]3CC[C@@H]2C3" Y4P SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCC2C3" # _pdbx_chem_comp_identifier.comp_id Y4P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[[(1~{R},2~{S},4~{S})-2-bicyclo[2.2.1]heptanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y4P "Create component" 2021-02-03 RCSB Y4P "Other modification" 2021-02-09 RCSB Y4P "Modify name" 2021-02-09 RCSB Y4P "Initial release" 2021-02-17 RCSB ##