data_Y7D # _chem_comp.id Y7D _chem_comp.name "(2Z)-3-methylhept-2-en-1-yl trihydrogen diphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H18 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-09 _chem_comp.pdbx_modified_date 2021-12-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LNX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7D C02 C1 C 0 1 N N N -4.141 0.069 31.332 -3.674 1.658 0.201 C02 Y7D 1 Y7D C09 C2 C 0 1 N N N -4.399 -1.325 33.347 -1.487 1.041 -0.692 C09 Y7D 2 Y7D O14 O1 O 0 1 N N N -4.641 -2.542 36.215 0.486 -1.573 -0.506 O14 Y7D 3 Y7D C01 C3 C 0 1 N N N -4.672 0.755 30.111 -4.565 2.509 1.068 C01 Y7D 4 Y7D C03 C4 C 0 1 N N N -2.675 0.175 31.675 -4.241 0.457 -0.513 C03 Y7D 5 Y7D C04 C5 C 0 1 N N N -2.321 1.631 31.946 -4.225 -0.749 0.428 C04 Y7D 6 Y7D C05 C6 C 0 1 N N N -2.980 2.145 33.219 -4.800 -1.968 -0.297 C05 Y7D 7 Y7D C06 C7 C 0 1 N N N -2.548 3.567 33.505 -4.785 -3.175 0.643 C06 Y7D 8 Y7D C08 C8 C 0 1 N N N -4.958 -0.644 32.121 -2.408 1.964 0.063 C08 Y7D 9 Y7D O10 O2 O 0 1 N N N -5.268 -2.376 33.760 -0.265 0.889 0.033 O10 Y7D 10 Y7D O12 O3 O 0 1 N N N -5.867 -4.424 35.154 1.343 0.387 -1.847 O12 Y7D 11 Y7D O13 O4 O 0 1 N N N -3.426 -4.063 34.582 2.208 0.135 0.511 O13 Y7D 12 Y7D O36 O5 O 0 1 N N N -3.578 -6.382 35.614 4.484 1.070 -0.416 O36 Y7D 13 Y7D O39 O6 O 0 1 N N N -2.785 -4.503 37.003 4.438 -0.280 1.840 O39 Y7D 14 Y7D O40 O7 O 0 1 N N N -1.344 -5.384 35.190 3.999 -1.407 -0.376 O40 Y7D 15 Y7D P11 P1 P 0 1 N N N -4.818 -3.355 34.954 0.952 -0.031 -0.482 P11 Y7D 16 Y7D P32 P2 P 0 1 N N N -2.767 -5.106 35.618 3.787 -0.148 0.373 P32 Y7D 17 Y7D H1 H1 H 0 1 N N N -3.409 -1.742 33.112 -1.964 0.067 -0.809 H1 Y7D 18 Y7D H2 H2 H 0 1 N N N -4.304 -0.590 34.160 -1.276 1.462 -1.675 H2 Y7D 19 Y7D H3 H3 H 0 1 N N N -5.229 -2.867 36.887 0.215 -1.915 0.357 H3 Y7D 20 Y7D H4 H4 H 0 1 N N N -5.752 0.567 30.025 -4.554 2.125 2.088 H4 Y7D 21 Y7D H5 H5 H 0 1 N N N -4.494 1.837 30.192 -4.203 3.537 1.062 H5 Y7D 22 Y7D H6 H6 H 0 1 N N N -4.160 0.365 29.219 -5.584 2.481 0.680 H6 Y7D 23 Y7D H7 H7 H 0 1 N N N -2.464 -0.427 32.571 -5.266 0.667 -0.818 H7 Y7D 24 Y7D H8 H8 H 0 1 N N N -2.074 -0.198 30.833 -3.637 0.240 -1.394 H8 Y7D 25 Y7D H9 H9 H 0 1 N N N -1.229 1.719 32.050 -3.200 -0.959 0.733 H9 Y7D 26 Y7D H10 H10 H 0 1 N N N -2.659 2.244 31.097 -4.829 -0.532 1.308 H10 Y7D 27 Y7D H11 H11 H 0 1 N N N -4.073 2.117 33.097 -5.826 -1.759 -0.602 H11 Y7D 28 Y7D H12 H12 H 0 1 N N N -2.688 1.502 34.062 -4.196 -2.186 -1.178 H12 Y7D 29 Y7D H13 H13 H 0 1 N N N -3.034 3.920 34.427 -5.195 -4.043 0.127 H13 Y7D 30 Y7D H14 H14 H 0 1 N N N -1.456 3.600 33.630 -3.760 -3.384 0.948 H14 Y7D 31 Y7D H15 H15 H 0 1 N N N -2.840 4.215 32.665 -5.389 -2.957 1.524 H15 Y7D 32 Y7D H16 H16 H 0 1 N N N -6.008 -0.730 31.881 -2.024 2.878 0.491 H16 Y7D 33 Y7D H17 H17 H 0 1 N N N -3.027 -7.107 35.342 4.385 1.928 0.019 H17 Y7D 34 Y7D H18 H18 H 0 1 N N N -1.895 -4.421 37.325 5.390 -0.451 1.834 H18 Y7D 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7D C01 C02 SING N N 1 Y7D C02 C03 SING N N 2 Y7D C02 C08 DOUB N Z 3 Y7D C03 C04 SING N N 4 Y7D C04 C05 SING N N 5 Y7D C08 C09 SING N N 6 Y7D C05 C06 SING N N 7 Y7D C09 O10 SING N N 8 Y7D O10 P11 SING N N 9 Y7D O13 P11 SING N N 10 Y7D O13 P32 SING N N 11 Y7D P11 O12 DOUB N N 12 Y7D P11 O14 SING N N 13 Y7D O40 P32 DOUB N N 14 Y7D O36 P32 SING N N 15 Y7D P32 O39 SING N N 16 Y7D C09 H1 SING N N 17 Y7D C09 H2 SING N N 18 Y7D O14 H3 SING N N 19 Y7D C01 H4 SING N N 20 Y7D C01 H5 SING N N 21 Y7D C01 H6 SING N N 22 Y7D C03 H7 SING N N 23 Y7D C03 H8 SING N N 24 Y7D C04 H9 SING N N 25 Y7D C04 H10 SING N N 26 Y7D C05 H11 SING N N 27 Y7D C05 H12 SING N N 28 Y7D C06 H13 SING N N 29 Y7D C06 H14 SING N N 30 Y7D C06 H15 SING N N 31 Y7D C08 H16 SING N N 32 Y7D O36 H17 SING N N 33 Y7D O39 H18 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7D SMILES ACDLabs 12.01 "O=P(O)(O)OP(O)(=O)OC\C=C(\C)CCCC" Y7D InChI InChI 1.03 "InChI=1S/C8H18O7P2/c1-3-4-5-8(2)6-7-14-17(12,13)15-16(9,10)11/h6H,3-5,7H2,1-2H3,(H,12,13)(H2,9,10,11)/b8-6-" Y7D InChIKey InChI 1.03 UIWSLTUOMNESGZ-VURMDHGXSA-N Y7D SMILES_CANONICAL CACTVS 3.385 "CCCCC(/C)=C\CO[P](O)(=O)O[P](O)(O)=O" Y7D SMILES CACTVS 3.385 "CCCCC(C)=CCO[P](O)(=O)O[P](O)(O)=O" Y7D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC/C(=C\COP(=O)(O)OP(=O)(O)O)/C" Y7D SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(=CCOP(=O)(O)OP(=O)(O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7D "SYSTEMATIC NAME" ACDLabs 12.01 "(2Z)-3-methylhept-2-en-1-yl trihydrogen diphosphate" Y7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(~{Z})-3-methylhept-2-enyl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7D "Create component" 2021-02-09 RCSB Y7D "Initial release" 2021-12-22 RCSB ##