data_Y7L # _chem_comp.id Y7L _chem_comp.name "N-{5-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophene-2-carbonyl}-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-10 _chem_comp.pdbx_modified_date 2023-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FJX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7L C8 C1 C 0 1 Y N N 25.647 -12.682 -22.922 -6.650 -0.278 0.180 C8 Y7L 1 Y7L N7 N1 N 0 1 Y N N 26.321 -13.631 -22.231 -6.292 1.044 0.334 N7 Y7L 2 Y7L C5 C2 C 0 1 Y N N 27.529 -11.789 -22.114 -7.998 1.021 -1.075 C5 Y7L 3 Y7L C6 C3 C 0 1 Y N N 27.446 -13.127 -21.740 -7.116 1.812 -0.431 C6 Y7L 4 Y7L N1 N2 N 0 1 N N N 25.829 -10.444 -23.527 -8.281 -1.502 -1.037 N1 Y7L 5 Y7L C2 C4 C 0 1 N N N 24.673 -10.517 -24.173 -7.819 -2.622 -0.534 C2 Y7L 6 Y7L N3 N3 N 0 1 N N N 23.959 -11.636 -24.234 -6.762 -2.642 0.329 N3 Y7L 7 Y7L C4 C5 C 0 1 N N N 24.411 -12.725 -23.627 -6.165 -1.490 0.706 C4 Y7L 8 Y7L C13 C6 C 0 1 Y N N 25.997 -11.061 -16.245 3.177 1.870 -0.439 C13 Y7L 9 Y7L C14 C7 C 0 1 Y N N 26.926 -11.692 -17.087 2.687 3.113 -0.728 C14 Y7L 10 Y7L C15 C8 C 0 1 Y N N 26.497 -12.977 -17.562 1.484 3.378 -0.120 C15 Y7L 11 Y7L C16 C9 C 0 1 Y N N 25.235 -13.372 -17.086 1.002 2.389 0.642 C16 Y7L 12 Y7L C17 C10 C 0 1 N N N 26.073 -9.698 -15.559 4.438 1.316 -0.939 C17 Y7L 13 Y7L C20 C11 C 0 1 N N S 27.196 -7.552 -15.017 6.079 -0.480 -1.078 C20 Y7L 14 Y7L C21 C12 C 0 1 N N N 28.320 -7.513 -13.983 6.588 -1.548 -0.107 C21 Y7L 15 Y7L C22 C13 C 0 1 N N N 27.884 -8.294 -12.739 6.935 -0.895 1.232 C22 Y7L 16 Y7L C23 C14 C 0 1 N N N 28.987 -8.499 -11.703 7.436 -1.947 2.189 C23 Y7L 17 Y7L C26 C15 C 0 1 N N N 27.327 -6.442 -16.051 5.853 -1.100 -2.433 C26 Y7L 18 Y7L C29 C16 C 0 1 N N N 25.855 -14.995 -22.073 -5.205 1.541 1.181 C29 Y7L 19 Y7L C30 C17 C 0 1 N N N 26.097 -15.456 -20.641 -3.886 1.477 0.407 C30 Y7L 20 Y7L C31 C18 C 0 1 N N N 24.851 -15.296 -19.774 -2.751 1.997 1.292 C31 Y7L 21 Y7L C32 C19 C 0 1 N N N 25.191 -15.597 -18.313 -1.432 1.933 0.519 C32 Y7L 22 Y7L C33 C20 C 0 1 N N N 24.459 -14.656 -17.367 -0.297 2.452 1.403 C33 Y7L 23 Y7L C9 C21 C 0 1 Y N N 26.355 -11.512 -22.884 -7.730 -0.316 -0.710 C9 Y7L 24 Y7L N11 N4 N 0 1 N N N 24.171 -9.332 -24.841 -8.409 -3.809 -0.894 N11 Y7L 25 Y7L N19 N5 N 0 1 N N N 27.222 -8.833 -15.706 4.819 0.074 -0.578 N19 Y7L 26 Y7L O10 O1 O 0 1 N N N 23.680 -13.918 -23.675 -5.225 -1.501 1.484 O10 Y7L 27 Y7L O18 O2 O 0 1 N N N 25.159 -9.345 -14.897 5.142 1.976 -1.681 O18 Y7L 28 Y7L O24 O3 O 0 1 N N N 28.804 -8.020 -10.397 7.802 -1.602 3.433 O24 Y7L 29 Y7L O25 O4 O 0 1 N N N 30.165 -9.170 -12.049 7.507 -3.100 1.836 O25 Y7L 30 Y7L O27 O5 O 0 1 N N N 26.902 -5.284 -15.794 6.875 -1.674 -3.087 O27 Y7L 31 Y7L O28 O6 O 0 1 N N N 27.846 -6.697 -17.171 4.752 -1.081 -2.930 O28 Y7L 32 Y7L S12 S1 S 0 1 Y N N 24.690 -12.112 -16.115 2.055 1.046 0.635 S12 Y7L 33 Y7L H1 H1 H 0 1 N N N 28.322 -11.097 -21.871 -8.772 1.352 -1.752 H1 Y7L 34 Y7L H2 H2 H 0 1 N N N 28.174 -13.664 -21.150 -7.071 2.888 -0.509 H2 Y7L 35 Y7L H3 H3 H 0 1 N N N 23.092 -11.657 -24.731 -6.446 -3.487 0.683 H3 Y7L 36 Y7L H4 H4 H 0 1 N N N 27.876 -11.252 -17.353 3.196 3.817 -1.371 H4 Y7L 37 Y7L H5 H5 H 0 1 N N N 27.092 -13.586 -18.226 0.965 4.317 -0.247 H5 Y7L 38 Y7L H6 H6 H 0 1 N N N 26.235 -7.434 -14.495 6.819 0.316 -1.161 H6 Y7L 39 Y7L H7 H7 H 0 1 N N N 29.226 -7.971 -14.406 5.812 -2.299 0.045 H7 Y7L 40 Y7L H8 H8 H 0 1 N N N 28.531 -6.469 -13.707 7.477 -2.022 -0.521 H8 Y7L 41 Y7L H9 H9 H 0 1 N N N 27.060 -7.745 -12.260 7.710 -0.144 1.080 H9 Y7L 42 Y7L H10 H10 H 0 1 N N N 27.527 -9.283 -13.062 6.046 -0.421 1.647 H10 Y7L 43 Y7L H11 H11 H 0 1 N N N 24.779 -15.042 -22.296 -5.409 2.573 1.466 H11 Y7L 44 Y7L H12 H12 H 0 1 N N N 26.402 -15.651 -22.766 -5.131 0.925 2.076 H12 Y7L 45 Y7L H13 H13 H 0 1 N N N 26.388 -16.517 -20.653 -3.682 0.445 0.122 H13 Y7L 46 Y7L H14 H14 H 0 1 N N N 26.911 -14.857 -20.207 -3.960 2.094 -0.488 H14 Y7L 47 Y7L H15 H15 H 0 1 N N N 24.479 -14.264 -19.857 -2.955 3.029 1.577 H15 Y7L 48 Y7L H16 H16 H 0 1 N N N 24.074 -15.994 -20.119 -2.677 1.380 2.188 H16 Y7L 49 Y7L H17 H17 H 0 1 N N N 24.900 -16.633 -18.084 -1.228 0.900 0.234 H17 Y7L 50 Y7L H18 H18 H 0 1 N N N 26.275 -15.480 -18.166 -1.506 2.549 -0.377 H18 Y7L 51 Y7L H19 H19 H 0 1 N N N 23.491 -14.390 -17.817 -0.223 1.835 2.299 H19 Y7L 52 Y7L H20 H20 H 0 1 N N N 24.289 -15.179 -16.414 -0.501 3.484 1.688 H20 Y7L 53 Y7L H21 H21 H 0 1 N N N 24.694 -8.481 -24.809 -9.157 -3.811 -1.512 H21 Y7L 54 Y7L H22 H22 H 0 1 N N N 23.301 -9.366 -25.334 -8.078 -4.645 -0.530 H22 Y7L 55 Y7L H23 H23 H 0 1 N N N 28.007 -9.106 -16.262 4.258 -0.452 0.013 H23 Y7L 56 Y7L H24 H24 H 0 1 N N N 29.567 -8.231 -9.872 8.117 -2.311 4.011 H24 Y7L 57 Y7L H25 H25 H 0 1 N N N 27.045 -4.720 -16.545 6.681 -2.058 -3.953 H25 Y7L 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7L N11 C2 SING N N 1 Y7L N3 C2 SING N N 2 Y7L N3 C4 SING N N 3 Y7L C2 N1 DOUB N N 4 Y7L O10 C4 DOUB N N 5 Y7L C4 C8 SING N N 6 Y7L N1 C9 SING N N 7 Y7L C8 C9 DOUB Y N 8 Y7L C8 N7 SING Y N 9 Y7L C9 C5 SING Y N 10 Y7L N7 C29 SING N N 11 Y7L N7 C6 SING Y N 12 Y7L C5 C6 DOUB Y N 13 Y7L C29 C30 SING N N 14 Y7L C30 C31 SING N N 15 Y7L C31 C32 SING N N 16 Y7L C32 C33 SING N N 17 Y7L C15 C14 SING Y N 18 Y7L C15 C16 DOUB Y N 19 Y7L C33 C16 SING N N 20 Y7L O28 C26 DOUB N N 21 Y7L C14 C13 DOUB Y N 22 Y7L C16 S12 SING Y N 23 Y7L C13 S12 SING Y N 24 Y7L C13 C17 SING N N 25 Y7L C26 O27 SING N N 26 Y7L C26 C20 SING N N 27 Y7L N19 C17 SING N N 28 Y7L N19 C20 SING N N 29 Y7L C17 O18 DOUB N N 30 Y7L C20 C21 SING N N 31 Y7L C21 C22 SING N N 32 Y7L C22 C23 SING N N 33 Y7L O25 C23 DOUB N N 34 Y7L C23 O24 SING N N 35 Y7L C5 H1 SING N N 36 Y7L C6 H2 SING N N 37 Y7L N3 H3 SING N N 38 Y7L C14 H4 SING N N 39 Y7L C15 H5 SING N N 40 Y7L C20 H6 SING N N 41 Y7L C21 H7 SING N N 42 Y7L C21 H8 SING N N 43 Y7L C22 H9 SING N N 44 Y7L C22 H10 SING N N 45 Y7L C29 H11 SING N N 46 Y7L C29 H12 SING N N 47 Y7L C30 H13 SING N N 48 Y7L C30 H14 SING N N 49 Y7L C31 H15 SING N N 50 Y7L C31 H16 SING N N 51 Y7L C32 H17 SING N N 52 Y7L C32 H18 SING N N 53 Y7L C33 H19 SING N N 54 Y7L C33 H20 SING N N 55 Y7L N11 H21 SING N N 56 Y7L N11 H22 SING N N 57 Y7L N19 H23 SING N N 58 Y7L O24 H24 SING N N 59 Y7L O27 H25 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7L SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(CCCCCn2ccc3N=C(N)NC(=O)c32)s1" Y7L InChI InChI 1.06 "InChI=1S/C21H25N5O6S/c22-21-24-13-9-11-26(17(13)19(30)25-21)10-3-1-2-4-12-5-7-15(33-12)18(29)23-14(20(31)32)6-8-16(27)28/h5,7,9,11,14H,1-4,6,8,10H2,(H,23,29)(H,27,28)(H,31,32)(H3,22,24,25,30)/t14-/m0/s1" Y7L InChIKey InChI 1.06 RQAHNHUMMCUWMX-AWEZNQCLSA-N Y7L SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2ccn(CCCCCc3sc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c2C(=O)N1" Y7L SMILES CACTVS 3.385 "NC1=Nc2ccn(CCCCCc3sc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1" Y7L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1CCCCCn2ccc3c2C(=O)NC(=N3)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" Y7L SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1CCCCCn2ccc3c2C(=O)NC(=N3)N)C(=O)NC(CCC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7L "SYSTEMATIC NAME" ACDLabs 12.01 "N-{5-[5-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophene-2-carbonyl}-L-glutamic acid" Y7L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[5-[5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)pentyl]thiophen-2-yl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7L "Create component" 2023-01-10 RCSB Y7L "Initial release" 2023-09-06 RCSB #