data_Y7Y # _chem_comp.id Y7Y _chem_comp.name "methyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-01-16 _chem_comp.pdbx_modified_date 2015-06-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y7Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4RZQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y7Y CAU CAU C 0 1 N N N 24.268 4.831 -11.797 8.042 1.041 -0.679 CAU Y7Y 1 Y7Y OAT OAT O 0 1 N N N 23.170 5.410 -11.122 6.981 0.056 -0.790 OAT Y7Y 2 Y7Y CAR CAR C 0 1 N N N 23.078 5.085 -9.700 5.791 0.379 -0.259 CAR Y7Y 3 Y7Y OAS OAS O 0 1 N N N 23.629 4.046 -9.272 5.641 1.449 0.282 OAS Y7Y 4 Y7Y CAQ CAQ C 0 1 N N N 22.247 6.125 -8.709 4.643 -0.594 -0.336 CAQ Y7Y 5 Y7Y CAP CAP C 0 1 N N N 22.815 7.566 -8.817 3.413 0.015 0.340 CAP Y7Y 6 Y7Y CAO CAO C 0 1 N N N 23.166 8.421 -7.523 2.247 -0.973 0.262 CAO Y7Y 7 Y7Y CAM CAM C 0 1 N N N 22.020 8.853 -6.552 1.017 -0.364 0.938 CAM Y7Y 8 Y7Y CAC CAC C 0 1 N N S 22.426 10.221 -5.782 -0.149 -1.352 0.859 CAC Y7Y 9 Y7Y SAB SAB S 0 1 N N N 24.094 10.886 -5.634 -0.688 -1.587 -0.883 SAB Y7Y 10 Y7Y CAA CAA C 0 1 N N N 24.045 11.932 -4.148 -2.421 -2.025 -0.451 CAA Y7Y 11 Y7Y CAE CAE C 0 1 N N R 22.961 11.357 -3.358 -2.695 -1.147 0.786 CAE Y7Y 12 Y7Y CAD CAD C 0 1 N N S 22.144 10.230 -4.215 -1.408 -0.765 1.528 CAD Y7Y 13 Y7Y NAF NAF N 0 1 N N N 22.521 8.974 -3.528 -1.366 0.703 1.435 NAF Y7Y 14 Y7Y CAG CAG C 0 1 N N N 23.280 9.311 -2.423 -2.440 1.129 0.757 CAG Y7Y 15 Y7Y OAN OAN O 0 1 N N N 23.649 8.613 -1.553 -2.659 2.304 0.532 OAN Y7Y 16 Y7Y NAH NAH N 0 1 N N N 23.639 10.552 -2.219 -3.251 0.144 0.349 NAH Y7Y 17 Y7Y CAV CAV C 0 1 N N N 24.156 10.734 -1.025 -4.392 0.308 -0.349 CAV Y7Y 18 Y7Y OAW OAW O 0 1 N N N 25.168 11.389 -0.807 -5.053 -0.660 -0.668 OAW Y7Y 19 Y7Y OAX OAX O 0 1 N N N 23.174 10.847 -0.129 -4.800 1.544 -0.692 OAX Y7Y 20 Y7Y CAY CAY C 0 1 N N N 22.435 12.120 -0.380 -6.038 1.645 -1.443 CAY Y7Y 21 Y7Y H1 H1 H 0 1 N N N 24.250 5.133 -12.855 8.237 1.247 0.373 H1 Y7Y 22 Y7Y H2 H2 H 0 1 N N N 25.205 5.174 -11.334 8.947 0.655 -1.148 H2 Y7Y 23 Y7Y H3 H3 H 0 1 N N N 24.204 3.735 -11.728 7.737 1.961 -1.179 H3 Y7Y 24 Y7Y H4 H4 H 0 1 N N N 21.187 6.133 -9.003 4.416 -0.806 -1.381 H4 Y7Y 25 Y7Y H5 H5 H 0 1 N N N 22.336 5.780 -7.668 4.916 -1.519 0.171 H5 Y7Y 26 Y7Y H6 H6 H 0 1 N N N 23.745 7.490 -9.400 3.640 0.226 1.385 H6 Y7Y 27 Y7Y H7 H7 H 0 1 N N N 22.074 8.150 -9.383 3.140 0.940 -0.167 H7 Y7Y 28 Y7Y H8 H8 H 0 1 N N N 23.880 7.828 -6.932 2.020 -1.184 -0.783 H8 Y7Y 29 Y7Y H9 H9 H 0 1 N N N 23.655 9.343 -7.871 2.520 -1.898 0.769 H9 Y7Y 30 Y7Y H10 H10 H 0 1 N N N 21.098 9.020 -7.129 1.244 -0.153 1.983 H10 Y7Y 31 Y7Y H11 H11 H 0 1 N N N 21.850 8.056 -5.813 0.744 0.561 0.431 H11 Y7Y 32 Y7Y H12 H12 H 0 1 N N N 21.829 11.031 -6.227 0.123 -2.305 1.312 H12 Y7Y 33 Y7Y H13 H13 H 0 1 N N N 24.998 11.882 -3.601 -3.099 -1.769 -1.265 H13 Y7Y 34 Y7Y H14 H14 H 0 1 N N N 23.827 12.978 -4.411 -2.501 -3.083 -0.198 H14 Y7Y 35 Y7Y H15 H15 H 0 1 N N N 22.269 12.115 -2.962 -3.390 -1.649 1.459 H15 Y7Y 36 Y7Y H16 H16 H 0 1 N N N 21.070 10.418 -4.066 -1.462 -1.076 2.571 H16 Y7Y 37 Y7Y H17 H17 H 0 1 N N N 22.271 8.048 -3.812 -0.673 1.271 1.806 H17 Y7Y 38 Y7Y H18 H18 H 0 1 N N N 21.622 12.224 0.354 -5.940 1.098 -2.381 H18 Y7Y 39 Y7Y H19 H19 H 0 1 N N N 23.126 12.970 -0.284 -6.854 1.220 -0.858 H19 Y7Y 40 Y7Y H20 H20 H 0 1 N N N 22.012 12.104 -1.395 -6.251 2.693 -1.654 H20 Y7Y 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y7Y CAU OAT SING N N 1 Y7Y OAT CAR SING N N 2 Y7Y CAR OAS DOUB N N 3 Y7Y CAR CAQ SING N N 4 Y7Y CAP CAQ SING N N 5 Y7Y CAP CAO SING N N 6 Y7Y CAO CAM SING N N 7 Y7Y CAM CAC SING N N 8 Y7Y CAC SAB SING N N 9 Y7Y CAC CAD SING N N 10 Y7Y SAB CAA SING N N 11 Y7Y CAD NAF SING N N 12 Y7Y CAD CAE SING N N 13 Y7Y CAA CAE SING N N 14 Y7Y NAF CAG SING N N 15 Y7Y CAE NAH SING N N 16 Y7Y CAG NAH SING N N 17 Y7Y CAG OAN DOUB N N 18 Y7Y NAH CAV SING N N 19 Y7Y CAV OAW DOUB N N 20 Y7Y CAV OAX SING N N 21 Y7Y CAY OAX SING N N 22 Y7Y CAU H1 SING N N 23 Y7Y CAU H2 SING N N 24 Y7Y CAU H3 SING N N 25 Y7Y CAQ H4 SING N N 26 Y7Y CAQ H5 SING N N 27 Y7Y CAP H6 SING N N 28 Y7Y CAP H7 SING N N 29 Y7Y CAO H8 SING N N 30 Y7Y CAO H9 SING N N 31 Y7Y CAM H10 SING N N 32 Y7Y CAM H11 SING N N 33 Y7Y CAC H12 SING N N 34 Y7Y CAA H13 SING N N 35 Y7Y CAA H14 SING N N 36 Y7Y CAE H15 SING N N 37 Y7Y CAD H16 SING N N 38 Y7Y NAF H17 SING N N 39 Y7Y CAY H18 SING N N 40 Y7Y CAY H19 SING N N 41 Y7Y CAY H20 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y7Y SMILES ACDLabs 12.01 "O=C(OC)CCCCC1SCC2N(C(=O)OC)C(=O)NC12" Y7Y InChI InChI 1.03 "InChI=1S/C13H20N2O5S/c1-19-10(16)6-4-3-5-9-11-8(7-21-9)15(12(17)14-11)13(18)20-2/h8-9,11H,3-7H2,1-2H3,(H,14,17)/t8-,9-,11-/m0/s1" Y7Y InChIKey InChI 1.03 BNKOHWLXGAGMAQ-QXEWZRGKSA-N Y7Y SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCCC[C@@H]1SC[C@H]2[C@@H]1NC(=O)N2C(=O)OC" Y7Y SMILES CACTVS 3.385 "COC(=O)CCCC[CH]1SC[CH]2[CH]1NC(=O)N2C(=O)OC" Y7Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)N(C(=O)N2)C(=O)OC" Y7Y SMILES "OpenEye OEToolkits" 1.7.6 "COC(=O)CCCCC1C2C(CS1)N(C(=O)N2)C(=O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y7Y "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate" Y7Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl (3aR,6S,6aS)-6-(5-methoxy-5-oxidanylidene-pentyl)-2-oxidanylidene-3a,4,6,6a-tetrahydro-1H-thieno[3,4-d]imidazole-3-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y7Y "Create component" 2015-01-16 RCSB Y7Y "Initial release" 2015-06-10 RCSB #