data_Y8L # _chem_comp.id Y8L _chem_comp.name "3,4-DIMETHYL-5-(2-{[(1Z)-4-PIPERAZIN-1-YLCYCLOHEXA-2,4-DIEN-1-YLIDENE]AMINO}PYRIMIDIN-4-YL)-1,3-THIAZOL-2(3H)-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N6 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-08-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code Y8L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XNB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8L C17 C17 C 0 1 N N N 21.030 24.009 29.256 -6.247 -0.341 0.451 C17 Y8L 1 Y8L C18 C18 C 0 1 N N N 20.870 22.477 29.251 -6.688 -1.799 0.618 C18 Y8L 2 Y8L N19 N19 N 0 1 N N N 21.724 21.821 28.249 -6.796 -2.430 -0.704 N19 Y8L 3 Y8L C20 C20 C 0 1 N N N 21.547 22.504 26.975 -5.494 -2.473 -1.382 C20 Y8L 4 Y8L C21 C21 C 0 1 N N N 22.313 23.826 27.037 -5.004 -1.043 -1.631 C21 Y8L 5 Y8L N16 N16 N 0 1 N N N 21.999 24.549 28.282 -5.016 -0.315 -0.353 N16 Y8L 6 Y8L C12 C12 C 0 1 N N N 22.470 25.869 28.457 -3.887 0.384 0.086 C12 Y8L 7 Y8L C13 C13 C 0 1 N N N 23.389 26.428 27.566 -2.641 0.273 -0.667 C13 Y8L 8 Y8L C14 C14 C 0 1 N N N 23.819 27.755 27.710 -1.512 0.916 -0.306 C14 Y8L 9 Y8L C11 C11 C 0 1 N N N 22.009 26.643 29.518 -3.974 1.146 1.186 C11 Y8L 10 Y8L C10 C10 C 0 1 N N N 22.471 27.957 29.661 -2.746 1.897 1.651 C10 Y8L 11 Y8L C9 C9 C 0 1 N N N 23.358 28.543 28.754 -1.479 1.743 0.837 C9 Y8L 12 Y8L N7 N7 N 0 1 N N N 23.753 29.812 28.968 -0.378 2.366 1.184 N7 Y8L 13 Y8L C4 C4 C 0 1 Y N N 24.842 30.429 28.472 0.722 2.302 0.383 C4 Y8L 14 Y8L N5 N5 N 0 1 Y N N 25.786 29.832 27.713 1.552 1.272 0.502 N5 Y8L 15 Y8L N3 N3 N 0 1 Y N N 24.930 31.755 28.691 0.935 3.271 -0.503 N3 Y8L 16 Y8L C2 C2 C 0 1 Y N N 25.945 32.478 28.244 1.992 3.245 -1.300 C2 Y8L 17 Y8L C1 C1 C 0 1 Y N N 26.946 31.872 27.505 2.886 2.195 -1.206 C1 Y8L 18 Y8L C6 C6 C 0 1 Y N N 26.865 30.501 27.258 2.636 1.184 -0.268 C6 Y8L 19 Y8L C15 C15 C 0 1 N N N 27.837 29.897 26.443 3.559 0.040 -0.134 C15 Y8L 20 Y8L S23 S23 S 0 1 N N N 29.207 30.663 25.737 5.043 -0.261 -1.056 S23 Y8L 21 Y8L C24 C24 C 0 1 N N N 29.677 29.286 24.871 5.415 -1.738 -0.252 C24 Y8L 22 Y8L O28 O28 O 0 1 N N N 30.676 29.188 24.162 6.374 -2.461 -0.456 O28 Y8L 23 Y8L N25 N25 N 0 1 N N N 28.842 28.279 25.139 4.436 -1.930 0.644 N25 Y8L 24 Y8L C29 C29 C 0 1 N N N 29.025 26.926 24.541 4.428 -3.105 1.519 C29 Y8L 25 Y8L C26 C26 C 0 1 N N N 27.837 28.572 25.975 3.458 -0.996 0.715 C26 Y8L 26 Y8L C27 C27 C 0 1 N N N 26.804 27.516 26.378 2.317 -1.113 1.692 C27 Y8L 27 Y8L H171 H171 H 0 0 N N N 20.048 24.445 29.023 -7.029 0.222 -0.059 H171 Y8L 28 Y8L H172 H172 H 0 0 N N N 21.417 24.273 30.251 -6.055 0.098 1.429 H172 Y8L 29 Y8L H181 H181 H 0 0 N N N 21.145 22.096 30.245 -5.953 -2.335 1.218 H181 Y8L 30 Y8L H182 H182 H 0 0 N N N 19.824 22.251 28.998 -7.657 -1.831 1.117 H182 Y8L 31 Y8L H19 H19 H 0 1 N N N 22.682 21.875 28.532 -7.198 -3.353 -0.633 H19 Y8L 32 Y8L H201 H201 H 0 0 N N N 21.939 21.881 26.157 -4.775 -3.000 -0.754 H201 Y8L 33 Y8L H202 H202 H 0 0 N N N 20.479 22.690 26.787 -5.596 -2.994 -2.334 H202 Y8L 34 Y8L H211 H211 H 0 0 N N N 23.393 23.618 27.004 -3.989 -1.067 -2.029 H211 Y8L 35 Y8L H212 H212 H 0 0 N N N 22.017 24.449 26.180 -5.666 -0.548 -2.341 H212 Y8L 36 Y8L H13 H13 H 0 1 N N N 23.774 25.829 26.754 -2.623 -0.350 -1.549 H13 Y8L 37 Y8L H11 H11 H 0 1 N N N 21.302 26.234 30.224 -4.904 1.222 1.731 H11 Y8L 38 Y8L H14 H14 H 0 1 N N N 24.518 28.169 26.999 -0.618 0.796 -0.901 H14 Y8L 39 Y8L H101 H101 H 0 0 N N N 21.570 28.587 29.635 -2.995 2.957 1.681 H101 Y8L 40 Y8L H102 H102 H 0 0 N N N 23.079 27.894 30.576 -2.528 1.581 2.671 H102 Y8L 41 Y8L H2 H2 H 0 1 N N N 25.992 33.536 28.455 2.154 4.037 -2.016 H2 Y8L 42 Y8L H1 H1 H 0 1 N N N 27.776 32.450 27.126 3.756 2.151 -1.845 H1 Y8L 43 Y8L H291 H291 H 0 0 N N N 29.070 27.012 23.445 5.299 -3.724 1.305 H291 Y8L 44 Y8L H292 H292 H 0 0 N N N 29.961 26.485 24.913 4.458 -2.783 2.560 H292 Y8L 45 Y8L H293 H293 H 0 0 N N N 28.178 26.283 24.824 3.520 -3.682 1.344 H293 Y8L 46 Y8L H271 H271 H 0 0 N N N 26.556 26.893 25.506 1.497 -1.663 1.229 H271 Y8L 47 Y8L H272 H272 H 0 0 N N N 27.220 26.882 27.175 2.654 -1.645 2.582 H272 Y8L 48 Y8L H273 H273 H 0 0 N N N 25.894 28.014 26.743 1.974 -0.117 1.972 H273 Y8L 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8L C17 C18 SING N N 1 Y8L C17 N16 SING N N 2 Y8L C18 N19 SING N N 3 Y8L N19 C20 SING N N 4 Y8L C20 C21 SING N N 5 Y8L C21 N16 SING N N 6 Y8L N16 C12 SING N N 7 Y8L C12 C13 SING N N 8 Y8L C12 C11 DOUB N N 9 Y8L C13 C14 DOUB N N 10 Y8L C14 C9 SING N N 11 Y8L C11 C10 SING N N 12 Y8L C10 C9 SING N N 13 Y8L C9 N7 DOUB N N 14 Y8L N7 C4 SING N N 15 Y8L C4 N5 SING Y N 16 Y8L C4 N3 DOUB Y N 17 Y8L N5 C6 DOUB Y N 18 Y8L N3 C2 SING Y N 19 Y8L C2 C1 DOUB Y N 20 Y8L C1 C6 SING Y N 21 Y8L C6 C15 SING N N 22 Y8L C15 S23 SING N N 23 Y8L C15 C26 DOUB N N 24 Y8L S23 C24 SING N N 25 Y8L C24 O28 DOUB N N 26 Y8L C24 N25 SING N N 27 Y8L N25 C29 SING N N 28 Y8L N25 C26 SING N N 29 Y8L C26 C27 SING N N 30 Y8L C17 H171 SING N N 31 Y8L C17 H172 SING N N 32 Y8L C18 H181 SING N N 33 Y8L C18 H182 SING N N 34 Y8L N19 H19 SING N N 35 Y8L C20 H201 SING N N 36 Y8L C20 H202 SING N N 37 Y8L C21 H211 SING N N 38 Y8L C21 H212 SING N N 39 Y8L C13 H13 SING N N 40 Y8L C11 H11 SING N N 41 Y8L C14 H14 SING N N 42 Y8L C10 H101 SING N N 43 Y8L C10 H102 SING N N 44 Y8L C2 H2 SING N N 45 Y8L C1 H1 SING N N 46 Y8L C29 H291 SING N N 47 Y8L C29 H292 SING N N 48 Y8L C29 H293 SING N N 49 Y8L C27 H271 SING N N 50 Y8L C27 H272 SING N N 51 Y8L C27 H273 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8L SMILES ACDLabs 10.04 "O=C4SC(c3nc(/N=C2\C=CC(N1CCNCC1)=CC2)ncc3)=C(N4C)C" Y8L SMILES_CANONICAL CACTVS 3.352 "CN1C(=O)SC(=C1C)c2ccnc(N=C3CC=C(C=C3)N4CCNCC4)n2" Y8L SMILES CACTVS 3.352 "CN1C(=O)SC(=C1C)c2ccnc(N=C3CC=C(C=C3)N4CCNCC4)n2" Y8L SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC1=C(SC(=O)N1C)c2ccnc(n2)N=C3CC=C(C=C3)N4CCNCC4" Y8L SMILES "OpenEye OEToolkits" 1.6.1 "CC1=C(SC(=O)N1C)c2ccnc(n2)N=C3CC=C(C=C3)N4CCNCC4" Y8L InChI InChI 1.03 "InChI=1S/C19H22N6OS/c1-13-17(27-19(26)24(13)2)16-7-8-21-18(23-16)22-14-3-5-15(6-4-14)25-11-9-20-10-12-25/h3,5-8,20H,4,9-12H2,1-2H3/b22-14+" Y8L InChIKey InChI 1.03 SNCJEJRBHBIGKH-HYARGMPZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y8L "SYSTEMATIC NAME" ACDLabs 10.04 "3,4-dimethyl-5-(2-{[(1Z)-4-piperazin-1-ylcyclohexa-2,4-dien-1-ylidene]amino}pyrimidin-4-yl)-1,3-thiazol-2(3H)-one" Y8L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "3,4-dimethyl-5-[2-[(4-piperazin-1-yl-1-cyclohexa-2,4-dienylidene)amino]pyrimidin-4-yl]-1,3-thiazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8L "Create component" 2010-08-01 EBI Y8L "Modify aromatic_flag" 2011-06-04 RCSB Y8L "Modify descriptor" 2011-06-04 RCSB #