data_Y8P # _chem_comp.id Y8P _chem_comp.name "(3~{S},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-10 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LOM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal Y8P C18 C1 C 0 1 N N N -2.266 -54.631 -77.625 0.478 1.452 0.403 C18 Y8P 1 Y8P C17 C2 C 0 1 Y N N -1.820 -52.595 -76.137 -1.976 0.938 0.526 C17 Y8P 2 Y8P C16 C3 C 0 1 Y N N -2.194 -53.943 -76.250 -0.964 1.800 0.137 C16 Y8P 3 Y8P C13 C4 C 0 1 Y N N -2.117 -52.798 -73.751 -3.543 2.505 -0.381 C13 Y8P 4 Y8P C12 C5 C 0 1 Y N N -1.779 -52.023 -74.861 -3.293 1.301 0.259 C12 Y8P 5 Y8P C11 C6 C 0 1 N N N -0.650 -48.095 -80.646 0.668 -3.827 -1.145 C11 Y8P 6 Y8P C01 C7 C 0 1 N N N -0.957 -48.345 -78.032 0.335 -2.795 1.106 C01 Y8P 7 Y8P C02 C8 C 0 1 N N R -1.221 -47.558 -79.336 1.092 -2.685 -0.219 C02 Y8P 8 Y8P C03 C9 C 0 1 N N N -1.577 -46.072 -79.214 2.574 -2.772 0.039 C03 Y8P 9 Y8P C06 C10 C 0 1 N N R -0.183 -49.673 -78.088 -1.169 -2.707 0.844 C06 Y8P 10 Y8P C08 C11 C 0 1 N N S 0.286 -50.174 -79.476 -1.593 -3.849 -0.082 C08 Y8P 11 Y8P C09 C12 C 0 1 N N N -1.433 -51.717 -77.399 -1.659 -0.365 1.214 C09 Y8P 12 Y8P O40 O1 O 0 1 N N N -0.968 -54.966 -78.070 1.319 2.497 -0.091 O40 Y8P 13 Y8P O42 O2 O 0 1 N N N -0.878 -54.204 -80.557 3.313 2.264 1.439 O42 Y8P 14 Y8P O43 O3 O 0 1 N N N -1.823 -56.426 -80.054 3.497 1.243 -0.862 O43 Y8P 15 Y8P O44 O4 O 0 1 N N N 0.603 -56.036 -79.806 3.534 3.848 -0.513 O44 Y8P 16 Y8P P41 P1 P 0 1 N N N -0.771 -55.415 -79.659 2.924 2.459 0.024 P41 Y8P 17 Y8P C10 C13 C 0 1 N N N -0.481 -49.644 -80.683 -0.837 -3.739 -1.408 C10 Y8P 18 Y8P C15 C14 C 0 1 Y N N -2.512 -54.648 -75.088 -1.293 2.984 -0.498 C15 Y8P 19 Y8P C20 C15 C 0 1 N N N -2.069 -52.146 -72.339 -4.964 2.912 -0.676 C20 Y8P 20 Y8P C21 C16 C 0 1 N N N 1.192 -51.492 -79.531 -3.098 -3.761 -0.345 C21 Y8P 21 Y8P N07 N1 N 0 1 N N N -0.401 -50.694 -76.972 -1.481 -1.420 0.208 N07 Y8P 22 Y8P N14 N2 N 0 1 Y N N -2.473 -54.068 -73.885 -2.551 3.298 -0.735 N14 Y8P 23 Y8P O04 O5 O 0 1 N N N -1.478 -45.506 -78.095 3.439 -2.698 -0.984 O04 Y8P 24 Y8P O05 O6 O 0 1 N N N -1.963 -45.427 -80.220 2.983 -2.908 1.168 O05 Y8P 25 Y8P O19 O7 O 0 1 N N N -1.407 -50.686 -74.702 -4.319 0.486 0.622 O19 Y8P 26 Y8P H1 H1 H 0 1 N N N -2.734 -53.948 -78.349 0.632 1.338 1.476 H1 Y8P 27 Y8P H2 H2 H 0 1 N N N -2.870 -55.547 -77.542 0.725 0.518 -0.101 H2 Y8P 28 Y8P H3 H3 H 0 1 N N N 0.337 -47.637 -80.805 1.207 -3.748 -2.089 H3 Y8P 29 Y8P H4 H4 H 0 1 N N N -1.326 -47.802 -81.463 0.899 -4.782 -0.673 H4 Y8P 30 Y8P H5 H5 H 0 1 N N N -0.395 -47.676 -77.364 0.567 -3.750 1.578 H5 Y8P 31 Y8P H6 H6 H 0 1 N N N 0.787 -49.287 -77.742 -1.708 -2.786 1.788 H6 Y8P 32 Y8P H7 H7 H 0 1 N N N 1.126 -49.469 -79.565 -1.362 -4.804 0.390 H7 Y8P 33 Y8P H8 H8 H 0 1 N N N -2.327 -51.204 -77.783 -0.741 -0.256 1.792 H8 Y8P 34 Y8P H9 H9 H 0 1 N N N -1.014 -52.362 -78.185 -2.478 -0.633 1.881 H9 Y8P 35 Y8P H10 H10 H 0 1 N N N -2.330 -56.088 -80.783 3.279 1.305 -1.802 H10 Y8P 36 Y8P H11 H11 H 0 1 N N N 1.112 -55.535 -80.432 4.499 3.896 -0.473 H11 Y8P 37 Y8P H12 H12 H 0 1 N N N -1.478 -50.108 -80.699 -1.068 -2.784 -1.879 H12 Y8P 38 Y8P H13 H13 H 0 1 N N N 0.066 -49.918 -81.597 -1.139 -4.552 -2.067 H13 Y8P 39 Y8P H14 H14 H 0 1 N N N -2.796 -55.687 -75.163 -0.508 3.660 -0.803 H14 Y8P 40 Y8P H15 H15 H 0 1 N N N -2.361 -52.888 -71.582 -5.360 3.483 0.164 H15 Y8P 41 Y8P H16 H16 H 0 1 N N N -1.048 -51.794 -72.132 -4.987 3.526 -1.576 H16 Y8P 42 Y8P H17 H17 H 0 1 N N N -2.764 -51.294 -72.305 -5.573 2.021 -0.829 H17 Y8P 43 Y8P H18 H18 H 0 1 N N N 1.641 -51.670 -78.543 -3.329 -2.806 -0.817 H18 Y8P 44 Y8P H19 H19 H 0 1 N N N 0.569 -52.354 -79.812 -3.400 -4.575 -1.004 H19 Y8P 45 Y8P H20 H20 H 0 1 N N N 1.989 -51.358 -80.277 -3.637 -3.839 0.600 H20 Y8P 46 Y8P H21 H21 H 0 1 N N N 0.463 -51.158 -76.774 -0.770 -1.166 -0.461 H21 Y8P 47 Y8P H23 H23 H 0 1 N N N -1.731 -44.594 -78.177 4.380 -2.758 -0.769 H23 Y8P 48 Y8P H24 H24 H 0 1 N N N -1.431 -50.458 -73.780 -4.662 0.658 1.510 H24 Y8P 49 Y8P H22 H22 H 0 1 N N N -1.939 -48.566 -77.588 0.637 -1.981 1.765 H22 Y8P 50 Y8P H25 H25 H 0 1 N N N -2.248 -47.919 -79.491 0.860 -1.730 -0.691 H25 Y8P 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal Y8P C10 C11 SING N N 1 Y8P C10 C08 SING N N 2 Y8P C11 C02 SING N N 3 Y8P O42 P41 DOUB N N 4 Y8P O05 C03 DOUB N N 5 Y8P O43 P41 SING N N 6 Y8P O44 P41 SING N N 7 Y8P P41 O40 SING N N 8 Y8P C21 C08 SING N N 9 Y8P C08 C06 SING N N 10 Y8P C02 C03 SING N N 11 Y8P C02 C01 SING N N 12 Y8P C03 O04 SING N N 13 Y8P C06 C01 SING N N 14 Y8P C06 N07 SING N N 15 Y8P O40 C18 SING N N 16 Y8P C18 C16 SING N N 17 Y8P C09 N07 SING N N 18 Y8P C09 C17 SING N N 19 Y8P C16 C17 DOUB Y N 20 Y8P C16 C15 SING Y N 21 Y8P C17 C12 SING Y N 22 Y8P C15 N14 DOUB Y N 23 Y8P C12 O19 SING N N 24 Y8P C12 C13 DOUB Y N 25 Y8P N14 C13 SING Y N 26 Y8P C13 C20 SING N N 27 Y8P C18 H1 SING N N 28 Y8P C18 H2 SING N N 29 Y8P C11 H3 SING N N 30 Y8P C11 H4 SING N N 31 Y8P C01 H5 SING N N 32 Y8P C06 H6 SING N N 33 Y8P C08 H7 SING N N 34 Y8P C09 H8 SING N N 35 Y8P C09 H9 SING N N 36 Y8P O43 H10 SING N N 37 Y8P O44 H11 SING N N 38 Y8P C10 H12 SING N N 39 Y8P C10 H13 SING N N 40 Y8P C15 H14 SING N N 41 Y8P C20 H15 SING N N 42 Y8P C20 H16 SING N N 43 Y8P C20 H17 SING N N 44 Y8P C21 H18 SING N N 45 Y8P C21 H19 SING N N 46 Y8P C21 H20 SING N N 47 Y8P N07 H21 SING N N 48 Y8P O04 H23 SING N N 49 Y8P O19 H24 SING N N 50 Y8P C01 H22 SING N N 51 Y8P C02 H25 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor Y8P SMILES ACDLabs 12.01 "Oc1c(CNC2CC(CCC2C)C(=O)O)c(cnc1C)COP(=O)(O)O" Y8P InChI InChI 1.03 "InChI=1S/C16H25N2O7P/c1-9-3-4-11(16(20)21)5-14(9)18-7-13-12(8-25-26(22,23)24)6-17-10(2)15(13)19/h6,9,11,14,18-19H,3-5,7-8H2,1-2H3,(H,20,21)(H2,22,23,24)/t9-,11?,14+/m0/s1" Y8P InChIKey InChI 1.03 VMGXIUNFRDERKW-FGBBXPCBSA-N Y8P SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@H](C[C@H]1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O" Y8P SMILES CACTVS 3.385 "C[CH]1CC[CH](C[CH]1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O" Y8P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H]2CC(CC[C@@H]2C)C(=O)O)O" Y8P SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2CC(CCC2C)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier Y8P "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,4S)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-methylcyclohexane-1-carboxylic acid" Y8P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexane-1-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site Y8P "Create component" 2021-02-10 RCSB Y8P "Modify value order" 2021-08-17 RCSB Y8P "Initial release" 2021-08-25 RCSB ##