data_YA1 # _chem_comp.id YA1 _chem_comp.name "(1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H52 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-17 _chem_comp.pdbx_modified_date 2014-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.743 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YA1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WT5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YA1 O2 O2 O 0 1 N N N 12.599 8.966 55.823 -6.156 -1.619 -2.751 O2 YA1 1 YA1 C3 C3 C 0 1 N N R 11.481 8.899 54.907 -6.118 -0.640 -1.712 C3 YA1 2 YA1 C2 C2 C 0 1 N N N 11.646 7.660 54.068 -7.391 -0.711 -0.900 C2 YA1 3 YA1 C9 C9 C 0 1 N N N 11.850 7.820 52.810 -8.364 -1.513 -1.255 C9 YA1 4 YA1 C1 C1 C 0 1 N N R 11.665 6.365 54.765 -7.522 0.161 0.328 C1 YA1 5 YA1 O1 O1 O 0 1 N N N 11.773 5.279 53.815 -7.515 1.537 -0.057 O1 YA1 6 YA1 C6 C6 C 0 1 N N N 10.443 6.207 55.617 -6.333 -0.120 1.256 C6 YA1 7 YA1 C4 C4 C 0 1 N N N 10.152 8.794 55.631 -4.929 -0.920 -0.784 C4 YA1 8 YA1 C5 C5 C 0 1 N N N 10.001 7.468 56.324 -5.060 -0.049 0.445 C5 YA1 9 YA1 C10 C10 C 0 1 N N N 9.383 7.439 57.504 -4.074 0.766 0.804 C10 YA1 10 YA1 C11 C11 C 0 1 N N N 9.128 6.202 58.267 -2.790 0.728 0.086 C11 YA1 11 YA1 C12 C12 C 0 1 N N N 8.122 6.132 59.157 -1.770 1.467 0.509 C12 YA1 12 YA1 C13 C13 C 0 1 N N N 7.192 7.276 59.478 -1.869 2.370 1.730 C13 YA1 13 YA1 C14 C14 C 0 1 N N N 5.688 6.808 59.449 -0.702 2.120 2.683 C14 YA1 14 YA1 C15 C15 C 0 1 N N N 5.437 5.459 60.105 0.647 2.117 1.945 C15 YA1 15 YA1 C17 C17 C 0 1 N N S 7.822 4.869 59.876 -0.437 1.465 -0.178 C17 YA1 16 YA1 C16 C16 C 0 1 N N R 6.403 4.417 59.593 0.591 1.030 0.897 C16 YA1 17 YA1 C23 C23 C 0 1 N N N 6.156 4.245 58.117 0.116 -0.270 1.550 C23 YA1 18 YA1 C18 C18 C 0 1 N N N 8.679 3.653 59.694 -0.222 0.403 -1.258 C18 YA1 19 YA1 C19 C19 C 0 1 N N N 7.764 2.523 60.212 1.326 0.262 -1.298 C19 YA1 20 YA1 C20 C20 C 0 1 N N R 6.366 3.058 60.337 1.843 0.742 0.084 C20 YA1 21 YA1 C21 C21 C 0 1 N N R 5.276 2.069 59.846 2.669 -0.360 0.752 C21 YA1 22 YA1 C22 C22 C 0 1 N N N 3.879 2.715 59.760 3.201 0.146 2.095 C22 YA1 23 YA1 C24 C24 C 0 1 N N R 5.221 0.817 60.699 3.843 -0.737 -0.153 C24 YA1 24 YA1 C31 C31 C 0 1 N N N 4.093 -0.140 60.226 4.591 -1.927 0.452 C31 YA1 25 YA1 C32 C32 C 0 1 N N N 4.237 -0.506 58.756 3.679 -3.155 0.457 C32 YA1 26 YA1 C33 C33 C 0 1 N N N 5.348 -1.481 58.600 4.385 -4.312 1.166 C33 YA1 27 YA1 C34 C34 C 0 1 N N N 5.209 -2.317 57.329 3.472 -5.540 1.172 C34 YA1 28 YA1 C25 C25 C 0 1 N N N 4.975 1.119 62.179 4.794 0.454 -0.278 C25 YA1 29 YA1 C26 C26 C 0 1 N N N 4.912 -0.179 62.997 5.901 0.120 -1.280 C26 YA1 30 YA1 C27 C27 C 0 1 N N N 5.038 -0.022 64.535 6.853 1.311 -1.405 C27 YA1 31 YA1 C29 C29 C 0 1 N N N 6.435 0.415 64.899 7.475 1.613 -0.040 C29 YA1 32 YA1 C28 C28 C 0 1 N N N 3.973 0.952 65.055 7.960 0.977 -2.407 C28 YA1 33 YA1 O3 O3 O 0 1 N N N 4.843 -1.313 65.135 6.127 2.455 -1.860 O3 YA1 34 YA1 H1 H1 H 0 1 N N N 12.518 9.742 56.366 -6.885 -1.501 -3.376 H1 YA1 35 YA1 H2 H2 H 0 1 N N N 11.470 9.784 54.254 -6.014 0.354 -2.149 H2 YA1 36 YA1 H3 H3 H 0 1 N N N 11.897 8.815 52.393 -9.270 -1.556 -0.668 H3 YA1 37 YA1 H4 H4 H 0 1 N N N 11.974 6.959 52.169 -8.260 -2.131 -2.134 H4 YA1 38 YA1 H5 H5 H 0 1 N N N 12.544 6.342 55.426 -8.453 -0.072 0.845 H5 YA1 39 YA1 H6 H6 H 0 1 N N N 11.784 4.451 54.280 -8.233 1.781 -0.657 H6 YA1 40 YA1 H7 H7 H 0 1 N N N 9.618 5.867 54.974 -6.304 0.628 2.049 H7 YA1 41 YA1 H8 H8 H 0 1 N N N 10.653 5.442 56.379 -6.436 -1.114 1.691 H8 YA1 42 YA1 H9 H9 H 0 1 N N N 10.089 9.597 56.380 -4.935 -1.970 -0.490 H9 YA1 43 YA1 H10 H10 H 0 1 N N N 9.338 8.910 54.901 -3.998 -0.687 -1.300 H10 YA1 44 YA1 H11 H11 H 0 1 N N N 9.049 8.375 57.927 -4.214 1.455 1.624 H11 YA1 45 YA1 H12 H12 H 0 1 N N N 9.759 5.340 58.108 -2.678 0.101 -0.786 H12 YA1 46 YA1 H13 H13 H 0 1 N N N 7.429 7.662 60.481 -1.853 3.412 1.408 H13 YA1 47 YA1 H14 H14 H 0 1 N N N 7.334 8.074 58.735 -2.806 2.170 2.250 H14 YA1 48 YA1 H15 H15 H 0 1 N N N 5.083 7.563 59.972 -0.690 2.902 3.443 H15 YA1 49 YA1 H16 H16 H 0 1 N N N 5.368 6.745 58.399 -0.842 1.156 3.171 H16 YA1 50 YA1 H17 H17 H 0 1 N N N 5.561 5.560 61.193 0.809 3.084 1.467 H17 YA1 51 YA1 H18 H18 H 0 1 N N N 4.409 5.137 59.882 1.454 1.913 2.649 H18 YA1 52 YA1 H19 H19 H 0 1 N N N 7.855 5.109 60.949 -0.200 2.458 -0.561 H19 YA1 53 YA1 H20 H20 H 0 1 N N N 5.119 3.917 57.954 0.112 -1.068 0.808 H20 YA1 54 YA1 H21 H21 H 0 1 N N N 6.323 5.203 57.603 0.790 -0.534 2.364 H21 YA1 55 YA1 H22 H22 H 0 1 N N N 6.847 3.489 57.715 -0.891 -0.133 1.942 H22 YA1 56 YA1 H23 H23 H 0 1 N N N 8.937 3.503 58.635 -0.689 -0.540 -0.971 H23 YA1 57 YA1 H24 H24 H 0 1 N N N 9.601 3.723 60.290 -0.603 0.747 -2.220 H24 YA1 58 YA1 H25 H25 H 0 1 N N N 7.777 1.682 59.504 1.603 -0.778 -1.472 H25 YA1 59 YA1 H26 H26 H 0 1 N N N 8.119 2.180 61.195 1.740 0.896 -2.082 H26 YA1 60 YA1 H27 H27 H 0 1 N N N 6.172 3.266 61.400 2.439 1.648 -0.028 H27 YA1 61 YA1 H28 H28 H 0 1 N N N 5.555 1.762 58.827 2.041 -1.235 0.917 H28 YA1 62 YA1 H29 H29 H 0 1 N N N 3.151 1.970 59.408 3.748 1.076 1.941 H29 YA1 63 YA1 H30 H30 H 0 1 N N N 3.581 3.077 60.755 2.367 0.322 2.773 H30 YA1 64 YA1 H31 H31 H 0 1 N N N 3.908 3.560 59.056 3.869 -0.601 2.525 H31 YA1 65 YA1 H32 H32 H 0 1 N N N 6.181 0.287 60.607 3.468 -1.008 -1.140 H32 YA1 66 YA1 H33 H33 H 0 1 N N N 3.122 0.354 60.376 5.480 -2.137 -0.142 H33 YA1 67 YA1 H34 H34 H 0 1 N N N 4.133 -1.060 60.827 4.886 -1.689 1.474 H34 YA1 68 YA1 H35 H35 H 0 1 N N N 4.458 0.399 58.172 2.753 -2.917 0.982 H35 YA1 69 YA1 H36 H36 H 0 1 N N N 3.300 -0.956 58.396 3.451 -3.442 -0.569 H36 YA1 70 YA1 H37 H37 H 0 1 N N N 5.352 -2.156 59.469 5.310 -4.549 0.642 H37 YA1 71 YA1 H38 H38 H 0 1 N N N 6.299 -0.930 58.559 4.613 -4.024 2.193 H38 YA1 72 YA1 H39 H39 H 0 1 N N N 6.051 -3.021 57.258 2.547 -5.303 1.696 H39 YA1 73 YA1 H40 H40 H 0 1 N N N 4.264 -2.879 57.361 3.244 -5.827 0.145 H40 YA1 74 YA1 H41 H41 H 0 1 N N N 5.211 -1.653 56.452 3.975 -6.365 1.677 H41 YA1 75 YA1 H42 H42 H 0 1 N N N 5.794 1.746 62.560 4.241 1.326 -0.625 H42 YA1 76 YA1 H43 H43 H 0 1 N N N 4.022 1.658 62.284 5.238 0.669 0.695 H43 YA1 77 YA1 H44 H44 H 0 1 N N N 3.947 -0.663 62.786 6.455 -0.752 -0.932 H44 YA1 78 YA1 H45 H45 H 0 1 N N N 5.731 -0.831 62.657 5.458 -0.095 -2.252 H45 YA1 79 YA1 H46 H46 H 0 1 N N N 6.513 0.523 65.991 8.028 0.740 0.308 H46 YA1 80 YA1 H47 H47 H 0 1 N N N 7.157 -0.339 64.553 8.153 2.462 -0.129 H47 YA1 81 YA1 H48 H48 H 0 1 N N N 6.654 1.380 64.418 6.686 1.851 0.674 H48 YA1 82 YA1 H49 H49 H 0 1 N N N 4.071 1.056 66.146 7.517 0.763 -3.379 H49 YA1 83 YA1 H50 H50 H 0 1 N N N 4.111 1.934 64.579 8.638 1.826 -2.496 H50 YA1 84 YA1 H51 H51 H 0 1 N N N 2.972 0.565 64.813 8.513 0.105 -2.059 H51 YA1 85 YA1 H52 H52 H 0 1 N N N 4.916 -1.238 66.079 5.705 2.335 -2.722 H52 YA1 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YA1 C9 C2 DOUB N N 1 YA1 O1 C1 SING N N 2 YA1 C2 C1 SING N N 3 YA1 C2 C3 SING N N 4 YA1 C1 C6 SING N N 5 YA1 C3 C4 SING N N 6 YA1 C3 O2 SING N N 7 YA1 C6 C5 SING N N 8 YA1 C4 C5 SING N N 9 YA1 C5 C10 DOUB N N 10 YA1 C34 C33 SING N N 11 YA1 C10 C11 SING N N 12 YA1 C23 C16 SING N N 13 YA1 C11 C12 DOUB N E 14 YA1 C33 C32 SING N N 15 YA1 C32 C31 SING N N 16 YA1 C12 C13 SING N N 17 YA1 C12 C17 SING N N 18 YA1 C14 C13 SING N N 19 YA1 C14 C15 SING N N 20 YA1 C16 C17 SING N N 21 YA1 C16 C15 SING N N 22 YA1 C16 C20 SING N N 23 YA1 C18 C17 SING N N 24 YA1 C18 C19 SING N N 25 YA1 C22 C21 SING N N 26 YA1 C21 C20 SING N N 27 YA1 C21 C24 SING N N 28 YA1 C19 C20 SING N N 29 YA1 C31 C24 SING N N 30 YA1 C24 C25 SING N N 31 YA1 C25 C26 SING N N 32 YA1 C26 C27 SING N N 33 YA1 C27 C29 SING N N 34 YA1 C27 C28 SING N N 35 YA1 C27 O3 SING N N 36 YA1 O2 H1 SING N N 37 YA1 C3 H2 SING N N 38 YA1 C9 H3 SING N N 39 YA1 C9 H4 SING N N 40 YA1 C1 H5 SING N N 41 YA1 O1 H6 SING N N 42 YA1 C6 H7 SING N N 43 YA1 C6 H8 SING N N 44 YA1 C4 H9 SING N N 45 YA1 C4 H10 SING N N 46 YA1 C10 H11 SING N N 47 YA1 C11 H12 SING N N 48 YA1 C13 H13 SING N N 49 YA1 C13 H14 SING N N 50 YA1 C14 H15 SING N N 51 YA1 C14 H16 SING N N 52 YA1 C15 H17 SING N N 53 YA1 C15 H18 SING N N 54 YA1 C17 H19 SING N N 55 YA1 C23 H20 SING N N 56 YA1 C23 H21 SING N N 57 YA1 C23 H22 SING N N 58 YA1 C18 H23 SING N N 59 YA1 C18 H24 SING N N 60 YA1 C19 H25 SING N N 61 YA1 C19 H26 SING N N 62 YA1 C20 H27 SING N N 63 YA1 C21 H28 SING N N 64 YA1 C22 H29 SING N N 65 YA1 C22 H30 SING N N 66 YA1 C22 H31 SING N N 67 YA1 C24 H32 SING N N 68 YA1 C31 H33 SING N N 69 YA1 C31 H34 SING N N 70 YA1 C32 H35 SING N N 71 YA1 C32 H36 SING N N 72 YA1 C33 H37 SING N N 73 YA1 C33 H38 SING N N 74 YA1 C34 H39 SING N N 75 YA1 C34 H40 SING N N 76 YA1 C34 H41 SING N N 77 YA1 C25 H42 SING N N 78 YA1 C25 H43 SING N N 79 YA1 C26 H44 SING N N 80 YA1 C26 H45 SING N N 81 YA1 C29 H46 SING N N 82 YA1 C29 H47 SING N N 83 YA1 C29 H48 SING N N 84 YA1 C28 H49 SING N N 85 YA1 C28 H50 SING N N 86 YA1 C28 H51 SING N N 87 YA1 O3 H52 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YA1 SMILES ACDLabs 12.01 "OC3C(=C)\C(O)C/C(=C\C=C1/CCCC2(C)C(C(C)C(CCCC)CCC(O)(C)C)CCC12)C3" YA1 InChI InChI 1.03 "InChI=1S/C31H52O3/c1-7-8-10-24(16-18-30(4,5)34)21(2)26-14-15-27-25(11-9-17-31(26,27)6)13-12-23-19-28(32)22(3)29(33)20-23/h12-13,21,24,26-29,32-34H,3,7-11,14-20H2,1-2,4-6H3/b25-13+/t21-,24-,26-,27+,28-,29-,31-/m1/s1" YA1 InChIKey InChI 1.03 RSXHMKSDJHHTDU-PJSVQGINSA-N YA1 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](CCC(C)(C)O)[C@@H](C)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3C[C@@H](O)C(=C)[C@H](O)C3" YA1 SMILES CACTVS 3.385 "CCCC[CH](CCC(C)(C)O)[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3" YA1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC[C@H](CCC(C)(C)O)[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C" YA1 SMILES "OpenEye OEToolkits" 1.7.6 "CCCCC(CCC(C)(C)O)C(C)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YA1 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" YA1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3R)-3-butyl-6-methyl-6-oxidanyl-heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YA1 "Create component" 2014-04-17 PDBJ YA1 "Initial release" 2014-06-11 RCSB #