data_YAR # _chem_comp.id YAR _chem_comp.name "(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-29 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8V4A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YAR N1 N1 N 0 1 N N N N N N 5.959 34.832 16.236 -2.339 0.996 0.138 N1 YAR 1 YAR C4 C1 C 0 1 N N N N N N 7.438 34.544 18.229 -2.605 -1.320 0.911 C4 YAR 2 YAR C5 C2 C 0 1 N N N N N N 6.619 35.119 19.406 -2.241 -2.178 -0.302 C5 YAR 3 YAR C7 C3 C 0 1 N N N N N N 4.634 33.233 20.533 -1.206 -4.629 -1.293 C7 YAR 4 YAR C10 C4 C 0 1 N N N N N N 3.079 36.343 12.140 -0.307 5.631 -0.553 C10 YAR 5 YAR C13 C5 C 0 1 N N N N N N 6.534 35.917 15.706 -1.036 0.798 0.136 C13 YAR 6 YAR C15 C6 C 0 1 N N N N N N 7.328 38.675 15.279 1.819 0.311 0.141 C15 YAR 7 YAR C11 C7 C 0 1 N N N N N N 4.817 36.151 13.912 -0.660 3.204 -0.202 C11 YAR 8 YAR C12 C8 C 0 1 N N N N N N 5.869 36.693 14.703 -0.157 1.889 -0.033 C12 YAR 9 YAR C14 C9 C 0 1 N N N N N N 6.228 38.045 14.467 1.243 1.693 -0.036 C14 YAR 10 YAR C16 C10 C 0 1 N N N N N N 5.576 38.758 13.513 2.061 2.758 -0.200 C16 YAR 11 YAR C2 C11 C 0 1 N N N N N N 5.850 32.798 17.415 -4.542 0.176 0.333 C2 YAR 12 YAR C23 C12 C 0 1 N N N N N N 6.523 34.005 17.147 -3.161 0.000 0.444 C23 YAR 13 YAR C39 C13 C 0 1 N N N N N N 3.663 33.680 21.650 -0.623 -6.010 -0.985 C39 YAR 14 YAR C9 C14 C 0 1 N N N N N N 4.192 36.925 12.976 0.214 4.230 -0.366 C9 YAR 15 YAR N17 N2 N 0 1 N N N N N N 4.574 38.209 12.778 1.554 4.005 -0.359 N17 YAR 16 YAR O18 O1 O 0 1 N N N N N N 10.976 37.599 14.808 3.858 -1.617 1.515 O18 YAR 17 YAR O19 O2 O 0 1 N N N N N N 9.647 37.078 16.895 5.733 -0.449 0.294 O19 YAR 18 YAR O20 O3 O 0 1 N N N N N N 4.433 34.862 14.106 -2.000 3.433 -0.205 O20 YAR 19 YAR O21 O4 O 0 1 N N N N N N 10.301 39.545 16.317 3.958 -1.902 -0.991 O21 YAR 20 YAR O22 O5 O 0 1 N N N N N N 8.608 38.291 14.774 3.245 0.381 0.100 O22 YAR 21 YAR O3 O6 O 0 1 N N N N N N 6.337 31.922 18.112 -5.041 1.360 -0.087 O3 YAR 22 YAR O8 O7 O 0 1 N N N N N N 4.628 32.594 16.899 -5.297 -0.740 0.614 O8 YAR 23 YAR P24 P1 P 0 1 N N N N N N 9.900 38.114 15.695 4.191 -0.912 0.257 P24 YAR 24 YAR S6 S1 S 0 1 N N N N N N 6.306 33.934 20.767 -1.571 -3.767 0.261 S6 YAR 25 YAR H1 H1 H 0 1 N N N N N N 8.077 33.729 18.599 -3.353 -1.838 1.512 H1 YAR 26 YAR H2 H2 H 0 1 N N N N N N 8.067 35.340 17.805 -1.713 -1.146 1.513 H2 YAR 27 YAR H3 H3 H 0 1 N N N N N N 7.168 35.978 19.819 -3.133 -2.353 -0.904 H3 YAR 28 YAR H4 H4 H 0 1 N N N N N N 5.648 35.457 19.015 -1.493 -1.661 -0.902 H4 YAR 29 YAR H5 H5 H 0 1 N N N N N N 4.240 33.569 19.563 -0.483 -4.050 -1.868 H5 YAR 30 YAR H6 H6 H 0 1 N N N N N N 4.704 32.135 20.540 -2.123 -4.743 -1.870 H6 YAR 31 YAR H7 H7 H 0 1 N N N N N N 2.905 35.298 12.436 -0.409 6.113 0.420 H7 YAR 32 YAR H8 H8 H 0 1 N N N N N N 2.160 36.926 12.297 0.391 6.200 -1.167 H8 YAR 33 YAR H9 H9 H 0 1 N N N N N N 3.361 36.381 11.077 -1.278 5.596 -1.045 H9 YAR 34 YAR H10 H10 H 0 1 N N N N N N 7.517 36.213 16.040 -0.642 -0.199 0.264 H10 YAR 35 YAR H11 H11 H 0 1 N N N N N N 7.233 39.770 15.229 1.502 -0.094 1.102 H11 YAR 36 YAR H12 H12 H 0 1 N N N N N N 7.239 38.347 16.325 1.464 -0.336 -0.661 H12 YAR 37 YAR H13 H13 H 0 1 N N N N N N 5.860 39.785 13.334 3.131 2.613 -0.203 H13 YAR 38 YAR H15 H15 H 0 1 N N N N N N 2.671 33.238 21.473 -0.403 -6.528 -1.919 H15 YAR 39 YAR H16 H16 H 0 1 N N N N N N 4.046 33.343 22.625 0.294 -5.897 -0.408 H16 YAR 40 YAR H17 H17 H 0 1 N N N N N N 3.581 34.777 21.647 -1.345 -6.589 -0.410 H17 YAR 41 YAR H18 H18 H 0 1 N N N N N N 10.235 36.337 16.804 6.361 -1.178 0.387 H18 YAR 42 YAR H19 H19 H 0 1 N N N N N N 4.967 34.471 14.788 -2.239 4.362 -0.326 H19 YAR 43 YAR H20 H20 H 0 1 N N N N N N 11.160 39.799 16.000 4.157 -1.506 -1.850 H20 YAR 44 YAR H21 H21 H 0 1 N N N N N N 5.730 31.194 18.177 -6.007 1.386 -0.132 H21 YAR 45 YAR H14 H14 H 0 1 N N N N N N 4.113 38.760 12.082 2.161 4.753 -0.474 H14 YAR 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YAR C10 C9 SING N N 1 YAR N17 C9 SING N N 2 YAR N17 C16 SING N N 3 YAR C9 C11 DOUB N N 4 YAR C16 C14 DOUB N N 5 YAR C11 O20 SING N N 6 YAR C11 C12 SING N N 7 YAR C14 C12 SING N N 8 YAR C14 C15 SING N N 9 YAR C12 C13 DOUB N Z 10 YAR O22 C15 SING N N 11 YAR O22 P24 SING N N 12 YAR O18 P24 DOUB N N 13 YAR P24 O21 SING N N 14 YAR P24 O19 SING N N 15 YAR C13 N1 SING N N 16 YAR N1 C23 DOUB N N 17 YAR O8 C2 DOUB N N 18 YAR C23 C2 SING N N 19 YAR C23 C4 SING N N 20 YAR C2 O3 SING N N 21 YAR C4 C5 SING N N 22 YAR C5 S6 SING N N 23 YAR C7 S6 SING N N 24 YAR C7 C39 SING N N 25 YAR C4 H1 SING N N 26 YAR C4 H2 SING N N 27 YAR C5 H3 SING N N 28 YAR C5 H4 SING N N 29 YAR C7 H5 SING N N 30 YAR C7 H6 SING N N 31 YAR C10 H7 SING N N 32 YAR C10 H8 SING N N 33 YAR C10 H9 SING N N 34 YAR C13 H10 SING N N 35 YAR C15 H11 SING N N 36 YAR C15 H12 SING N N 37 YAR C16 H13 SING N N 38 YAR C39 H15 SING N N 39 YAR C39 H16 SING N N 40 YAR C39 H17 SING N N 41 YAR O19 H18 SING N N 42 YAR O20 H19 SING N N 43 YAR O21 H20 SING N N 44 YAR O3 H21 SING N N 45 YAR N17 H14 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YAR SMILES ACDLabs 12.01 "O=C(O)C(\CCSCC)=N\C=C1/C(O)=C(C)NC=C1COP(=O)(O)O" YAR InChI InChI 1.06 "InChI=1S/C14H21N2O7PS/c1-3-25-5-4-12(14(18)19)16-7-11-10(8-23-24(20,21)22)6-15-9(2)13(11)17/h6-7,15,17H,3-5,8H2,1-2H3,(H,18,19)(H2,20,21,22)/b11-7-,16-12+" YAR InChIKey InChI 1.06 BRPPVXUZMWRMGM-YAHQYOFBSA-N YAR SMILES_CANONICAL CACTVS 3.385 "CCSCCC(=N\C=C1/C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O" YAR SMILES CACTVS 3.385 "CCSCCC(=NC=C1C(=C(C)NC=C1CO[P](O)(O)=O)O)C(O)=O" YAR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCSCC/C(=N\C=C/1\C(=CNC(=C1O)C)COP(=O)(O)O)/C(=O)O" YAR SMILES "OpenEye OEToolkits" 2.0.7 "CCSCCC(=NC=C1C(=CNC(=C1O)C)COP(=O)(O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YAR "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-4-(ethylsulfanyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}butanoic acid" YAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{E})-4-ethylsulfanyl-2-[(~{Z})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)-1~{H}-pyridin-4-ylidene]methyl]imino-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YAR "Create component" 2023-11-29 RCSB YAR "Modify value order" 2023-11-30 RCSB YAR "Initial release" 2023-12-13 RCSB #