data_YBS # _chem_comp.id YBS _chem_comp.name "[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]-(2-pyridin-4-ylpyridin-3-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-17 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YBS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LRL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YBS C4 C1 C 0 1 Y N N 20.238 3.474 -20.086 4.767 0.245 -0.267 C4 YBS 1 YBS C5 C2 C 0 1 Y N N 21.319 2.611 -20.049 4.819 -1.128 -0.419 C5 YBS 2 YBS C6 C3 C 0 1 Y N N 22.391 2.781 -20.904 5.621 -1.886 0.414 C6 YBS 3 YBS C7 C4 C 0 1 Y N N 22.396 3.851 -21.792 6.371 -1.270 1.399 C7 YBS 4 YBS C8 C5 C 0 1 Y N N 21.328 4.728 -21.822 6.319 0.102 1.551 C8 YBS 5 YBS C10 C6 C 0 1 N N N 17.631 2.622 -20.549 1.577 1.939 -1.533 C10 YBS 6 YBS N12 N1 N 0 1 N N N 17.089 0.461 -21.611 -0.295 0.782 -0.479 N12 YBS 7 YBS C13 C7 C 0 1 N N N 17.399 -0.208 -20.361 0.555 -0.044 0.389 C13 YBS 8 YBS C15 C8 C 0 1 N N N 17.335 -0.136 -22.810 -1.501 0.336 -0.884 C15 YBS 9 YBS C17 C9 C 0 1 Y N N 17.824 -1.537 -22.847 -1.928 -1.039 -0.557 C17 YBS 10 YBS C20 C10 C 0 1 Y N N 18.742 -4.101 -22.897 -2.785 -3.553 0.080 C20 YBS 11 YBS C22 C11 C 0 1 Y N N 16.932 -2.634 -22.716 -3.158 -1.274 0.080 C22 YBS 12 YBS C24 C12 C 0 1 Y N N 14.734 -1.369 -23.013 -5.415 -0.191 0.197 C24 YBS 13 YBS C28 C13 C 0 1 Y N N 14.681 -3.522 -21.968 -3.513 1.030 1.000 C28 YBS 14 YBS O1 O1 O 0 1 N N N 16.892 2.124 -18.629 2.590 1.951 0.661 O1 YBS 15 YBS C2 C14 C 0 1 N N N 18.189 2.004 -19.209 2.500 1.207 -0.556 C2 YBS 16 YBS C3 C15 C 0 1 N N N 19.051 3.313 -19.158 3.893 1.071 -1.174 C3 YBS 17 YBS C9 C16 C 0 1 Y N N 20.263 4.544 -20.967 5.514 0.860 0.721 C9 YBS 18 YBS C11 C17 C 0 1 N N N 16.617 1.847 -21.448 0.193 2.103 -0.896 C11 YBS 19 YBS C14 C18 C 0 1 N N N 18.581 0.652 -19.871 1.935 -0.184 -0.262 C14 YBS 20 YBS O16 O2 O 0 1 N N N 17.123 0.437 -23.858 -2.237 1.067 -1.518 O16 YBS 21 YBS C18 C19 C 0 1 Y N N 19.200 -1.775 -23.007 -1.117 -2.132 -0.881 C18 YBS 22 YBS C19 C20 C 0 1 Y N N 19.662 -3.082 -23.042 -1.562 -3.401 -0.553 C19 YBS 23 YBS N21 N2 N 0 1 Y N N 17.448 -3.864 -22.748 -3.536 -2.511 0.371 N21 YBS 24 YBS C23 C21 C 0 1 Y N N 15.441 -2.493 -22.553 -4.038 -0.133 0.429 C23 YBS 25 YBS C25 C22 C 0 1 Y N N 13.352 -1.330 -22.836 -6.197 0.894 0.537 C25 YBS 26 YBS N26 N3 N 0 1 Y N N 12.682 -2.313 -22.242 -5.662 1.973 1.074 N26 YBS 27 YBS C27 C23 C 0 1 Y N N 13.300 -3.409 -21.830 -4.367 2.069 1.310 C27 YBS 28 YBS H1 H1 H 0 1 N N N 21.325 1.794 -19.343 4.233 -1.608 -1.188 H1 YBS 29 YBS H2 H2 H 0 1 N N N 23.219 2.088 -20.883 5.661 -2.958 0.295 H2 YBS 30 YBS H3 H3 H 0 1 N N N 23.234 3.997 -22.458 6.998 -1.863 2.049 H3 YBS 31 YBS H4 H4 H 0 1 N N N 21.328 5.557 -22.515 6.905 0.583 2.320 H4 YBS 32 YBS H5 H5 H 0 1 N N N 18.506 2.833 -21.181 1.992 2.921 -1.760 H5 YBS 33 YBS H6 H6 H 0 1 N N N 17.141 3.567 -20.273 1.488 1.360 -2.452 H6 YBS 34 YBS H7 H7 H 0 1 N N N 16.552 -0.172 -19.660 0.658 0.435 1.363 H7 YBS 35 YBS H8 H8 H 0 1 N N N 17.697 -1.254 -20.523 0.106 -1.030 0.510 H8 YBS 36 YBS H9 H9 H 0 1 N N N 19.089 -5.124 -22.905 -3.130 -4.544 0.334 H9 YBS 37 YBS H10 H10 H 0 1 N N N 15.251 -0.552 -23.494 -5.860 -1.069 -0.246 H10 YBS 38 YBS H11 H11 H 0 1 N N N 15.177 -4.416 -21.620 -2.454 1.115 1.195 H11 YBS 39 YBS H12 H12 H 0 1 N N N 16.913 1.801 -17.736 3.161 1.545 1.329 H12 YBS 40 YBS H13 H13 H 0 1 N N N 19.436 3.400 -18.131 4.332 2.061 -1.301 H13 YBS 41 YBS H14 H14 H 0 1 N N N 18.369 4.151 -19.366 3.813 0.583 -2.145 H14 YBS 42 YBS H15 H15 H 0 1 N N N 19.438 5.241 -20.983 5.473 1.933 0.840 H15 YBS 43 YBS H16 H16 H 0 1 N N N 16.550 2.333 -22.433 0.267 2.757 -0.027 H16 YBS 44 YBS H17 H17 H 0 1 N N N 15.626 1.846 -20.971 -0.495 2.534 -1.623 H17 YBS 45 YBS H18 H18 H 0 1 N N N 19.147 0.064 -19.133 2.605 -0.714 0.416 H18 YBS 46 YBS H19 H19 H 0 1 N N N 19.224 0.871 -20.736 1.842 -0.743 -1.193 H19 YBS 47 YBS H20 H20 H 0 1 N N N 19.890 -0.949 -23.102 -0.167 -1.990 -1.375 H20 YBS 48 YBS H21 H21 H 0 1 N N N 20.712 -3.297 -23.179 -0.961 -4.267 -0.789 H21 YBS 49 YBS H22 H22 H 0 1 N N N 12.806 -0.470 -23.194 -7.262 0.859 0.362 H22 YBS 50 YBS H23 H23 H 0 1 N N N 12.733 -4.215 -21.387 -3.971 2.971 1.751 H23 YBS 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YBS O16 C15 DOUB N N 1 YBS C19 C18 DOUB Y N 2 YBS C19 C20 SING Y N 3 YBS C24 C25 DOUB Y N 4 YBS C24 C23 SING Y N 5 YBS C18 C17 SING Y N 6 YBS C20 N21 DOUB Y N 7 YBS C17 C15 SING N N 8 YBS C17 C22 DOUB Y N 9 YBS C25 N26 SING Y N 10 YBS C15 N12 SING N N 11 YBS N21 C22 SING Y N 12 YBS C22 C23 SING N N 13 YBS C23 C28 DOUB Y N 14 YBS N26 C27 DOUB Y N 15 YBS C28 C27 SING Y N 16 YBS C8 C7 DOUB Y N 17 YBS C8 C9 SING Y N 18 YBS C7 C6 SING Y N 19 YBS N12 C11 SING N N 20 YBS N12 C13 SING N N 21 YBS C11 C10 SING N N 22 YBS C9 C4 DOUB Y N 23 YBS C6 C5 DOUB Y N 24 YBS C10 C2 SING N N 25 YBS C13 C14 SING N N 26 YBS C4 C5 SING Y N 27 YBS C4 C3 SING N N 28 YBS C14 C2 SING N N 29 YBS C2 C3 SING N N 30 YBS C2 O1 SING N N 31 YBS C5 H1 SING N N 32 YBS C6 H2 SING N N 33 YBS C7 H3 SING N N 34 YBS C8 H4 SING N N 35 YBS C10 H5 SING N N 36 YBS C10 H6 SING N N 37 YBS C13 H7 SING N N 38 YBS C13 H8 SING N N 39 YBS C20 H9 SING N N 40 YBS C24 H10 SING N N 41 YBS C28 H11 SING N N 42 YBS O1 H12 SING N N 43 YBS C3 H13 SING N N 44 YBS C3 H14 SING N N 45 YBS C9 H15 SING N N 46 YBS C11 H16 SING N N 47 YBS C11 H17 SING N N 48 YBS C14 H18 SING N N 49 YBS C14 H19 SING N N 50 YBS C18 H20 SING N N 51 YBS C19 H21 SING N N 52 YBS C25 H22 SING N N 53 YBS C27 H23 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YBS InChI InChI 1.03 "InChI=1S/C23H23N3O2/c27-22(20-7-4-12-25-21(20)19-8-13-24-14-9-19)26-15-10-23(28,11-16-26)17-18-5-2-1-3-6-18/h1-9,12-14,28H,10-11,15-17H2" YBS InChIKey InChI 1.03 XKUZMIUSBMCVPP-UHFFFAOYSA-N YBS SMILES_CANONICAL CACTVS 3.385 "OC1(CCN(CC1)C(=O)c2cccnc2c3ccncc3)Cc4ccccc4" YBS SMILES CACTVS 3.385 "OC1(CCN(CC1)C(=O)c2cccnc2c3ccncc3)Cc4ccccc4" YBS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2(CCN(CC2)C(=O)c3cccnc3c4ccncc4)O" YBS SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2(CCN(CC2)C(=O)c3cccnc3c4ccncc4)O" # _pdbx_chem_comp_identifier.comp_id YBS _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]-(2-pyridin-4-ylpyridin-3-yl)methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YBS "Create component" 2021-02-17 RCSB YBS "Initial release" 2021-08-25 RCSB ##