data_YCD # _chem_comp.id YCD _chem_comp.name "(4~{R})-4-(fluoranylmethyl)-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 F N2 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-17 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LOM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YCD C10 C1 C 0 1 Y N N -6.193 -62.005 -23.836 4.205 -0.433 1.857 C10 YCD 1 YCD C11 C2 C 0 1 Y N N -6.514 -60.458 -23.955 4.842 -0.820 0.696 C11 YCD 2 YCD C12 C3 C 0 1 Y N N -1.806 -60.193 -28.072 -1.117 3.112 -0.517 C12 YCD 3 YCD C13 C4 C 0 1 Y N N -0.786 -59.877 -28.963 -2.376 3.656 -0.309 C13 YCD 4 YCD C15 C5 C 0 1 Y N N 0.774 -60.889 -27.634 -3.323 1.562 -0.146 C15 YCD 5 YCD C16 C6 C 0 1 Y N N -0.184 -61.243 -26.686 -2.102 0.947 -0.347 C16 YCD 6 YCD C17 C7 C 0 1 Y N N -1.495 -60.889 -26.914 -0.973 1.729 -0.537 C17 YCD 7 YCD C18 C8 C 0 1 N N N 0.195 -62.027 -25.408 -1.998 -0.557 -0.360 C18 YCD 8 YCD C20 C9 C 0 1 N N N -1.119 -59.112 -30.234 -2.547 5.153 -0.285 C20 YCD 9 YCD C21 C10 C 0 1 N N N -4.687 -63.718 -24.753 2.253 0.548 3.076 C21 YCD 10 YCD O33 O1 O 0 1 N N N -0.451 -65.778 -24.760 -2.669 -3.329 0.919 O33 YCD 11 YCD O34 O2 O 0 1 N N N 0.736 -64.078 -23.369 -3.244 -3.353 -1.539 O34 YCD 12 YCD O35 O3 O 0 1 N N N -1.722 -63.955 -23.570 -5.092 -2.990 0.296 O35 YCD 13 YCD C01 C11 C 0 1 Y N N -6.065 -60.674 -26.527 2.946 -0.064 -0.593 C01 YCD 14 YCD C02 C12 C 0 1 Y N N -6.978 -60.109 -25.397 4.216 -0.638 -0.539 C02 YCD 15 YCD C03 C13 C 0 1 N N N -7.859 -58.876 -25.702 4.896 -1.052 -1.783 C03 YCD 16 YCD C06 C14 C 0 1 Y N N -4.973 -61.649 -26.081 2.312 0.318 0.580 C06 YCD 17 YCD C08 C15 C 0 1 Y N N -5.158 -62.454 -24.799 2.944 0.132 1.804 C08 YCD 18 YCD C09 C16 C 0 1 N N N -2.630 -61.253 -25.891 0.376 1.095 -0.759 C09 YCD 19 YCD F30 F1 F 0 1 N N N -3.636 -64.071 -25.567 1.498 -0.522 3.568 F30 YCD 20 YCD N07 N1 N 0 1 N N N -3.848 -61.619 -26.656 1.040 0.894 0.531 N07 YCD 21 YCD N14 N2 N 0 1 Y N N 0.452 -60.227 -28.725 -3.425 2.876 -0.133 N14 YCD 22 YCD O04 O4 O 0 1 N N N -7.901 -58.424 -26.882 4.350 -0.892 -2.856 O04 YCD 23 YCD O05 O5 O 0 1 N N N -8.531 -58.313 -24.803 6.122 -1.607 -1.728 O05 YCD 24 YCD O19 O6 O 0 1 N N N -3.169 -59.803 -28.345 -0.039 3.919 -0.703 O19 YCD 25 YCD O31 O7 O 0 1 N N N -0.274 -63.316 -25.598 -3.291 -1.125 -0.143 O31 YCD 26 YCD P32 P1 P 0 1 N N N -0.439 -64.296 -24.309 -3.555 -2.713 -0.095 P32 YCD 27 YCD H1 H1 H 0 1 N N N -6.676 -62.663 -23.129 4.691 -0.575 2.811 H1 YCD 28 YCD H3 H3 H 0 1 N N N -6.423 -59.746 -23.148 5.826 -1.265 0.743 H3 YCD 29 YCD H5 H5 H 0 1 N N N 1.805 -61.164 -27.470 -4.206 0.958 0.001 H5 YCD 30 YCD H6 H6 H 0 1 N N N 1.287 -62.033 -25.273 -1.613 -0.887 -1.325 H6 YCD 31 YCD H7 H7 H 0 1 N N N -0.281 -61.573 -24.526 -1.322 -0.881 0.431 H7 YCD 32 YCD H8 H8 H 0 1 N N N -0.200 -58.950 -30.816 -2.421 5.517 0.734 H8 YCD 33 YCD H9 H9 H 0 1 N N N -1.836 -59.692 -30.834 -1.800 5.614 -0.932 H9 YCD 34 YCD H10 H10 H 0 1 N N N -1.563 -58.140 -29.971 -3.545 5.410 -0.642 H10 YCD 35 YCD H11 H11 H 0 1 N N N -5.526 -64.383 -25.004 2.999 0.837 3.817 H11 YCD 36 YCD H12 H12 H 0 1 N N N -4.368 -63.905 -23.717 1.596 1.394 2.874 H12 YCD 37 YCD H13 H13 H 0 1 N N N 1.210 -64.894 -23.259 -3.788 -2.995 -2.253 H13 YCD 38 YCD H14 H14 H 0 1 N N N -2.280 -64.723 -23.531 -5.322 -3.928 0.344 H14 YCD 39 YCD H15 H15 H 0 1 N N N -6.195 -60.394 -27.562 2.456 0.080 -1.545 H15 YCD 40 YCD H18 H18 H 0 1 N N N -2.312 -62.103 -25.270 0.249 0.134 -1.256 H18 YCD 41 YCD H19 H19 H 0 1 N N N -2.842 -60.387 -25.247 0.986 1.749 -1.383 H19 YCD 42 YCD H20 H20 H 0 1 N N N -3.690 -62.534 -27.028 0.597 1.161 1.351 H20 YCD 43 YCD H22 H22 H 0 1 N N N -9.004 -57.578 -25.174 6.527 -1.861 -2.568 H22 YCD 44 YCD H23 H23 H 0 1 N N N -3.731 -60.097 -27.638 0.124 4.150 -1.628 H23 YCD 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YCD C20 C13 SING N N 1 YCD C13 N14 DOUB Y N 2 YCD C13 C12 SING Y N 3 YCD N14 C15 SING Y N 4 YCD O19 C12 SING N N 5 YCD C12 C17 DOUB Y N 6 YCD C15 C16 DOUB Y N 7 YCD C17 C16 SING Y N 8 YCD C17 C09 SING N N 9 YCD O04 C03 DOUB N N 10 YCD C16 C18 SING N N 11 YCD N07 C06 SING N N 12 YCD N07 C09 SING N N 13 YCD C01 C06 SING Y N 14 YCD C01 C02 DOUB Y N 15 YCD C06 C08 DOUB Y N 16 YCD C03 C02 SING N N 17 YCD C03 O05 SING N N 18 YCD O31 C18 SING N N 19 YCD O31 P32 SING N N 20 YCD F30 C21 SING N N 21 YCD C02 C11 SING Y N 22 YCD C08 C21 SING N N 23 YCD C08 C10 SING Y N 24 YCD O33 P32 DOUB N N 25 YCD P32 O35 SING N N 26 YCD P32 O34 SING N N 27 YCD C11 C10 DOUB Y N 28 YCD C10 H1 SING N N 29 YCD C11 H3 SING N N 30 YCD C15 H5 SING N N 31 YCD C18 H6 SING N N 32 YCD C18 H7 SING N N 33 YCD C20 H8 SING N N 34 YCD C20 H9 SING N N 35 YCD C20 H10 SING N N 36 YCD C21 H11 SING N N 37 YCD C21 H12 SING N N 38 YCD O34 H13 SING N N 39 YCD O35 H14 SING N N 40 YCD C01 H15 SING N N 41 YCD C09 H18 SING N N 42 YCD C09 H19 SING N N 43 YCD N07 H20 SING N N 44 YCD O05 H22 SING N N 45 YCD O19 H23 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YCD SMILES ACDLabs 12.01 "Oc1c(CNc2cc(ccc2CF)C(=O)O)c(cnc1C)COP(=O)(O)O" YCD InChI InChI 1.03 "InChI=1S/C16H18FN2O7P/c1-9-15(20)13(12(6-18-9)8-26-27(23,24)25)7-19-14-4-10(16(21)22)2-3-11(14)5-17/h2-4,6,19-20H,5,7-8H2,1H3,(H,21,22)(H2,23,24,25)" YCD InChIKey InChI 1.03 MGRVCHMHEIIJND-UHFFFAOYSA-N YCD SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(ccc2CF)C(O)=O)c1O" YCD SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CNc2cc(ccc2CF)C(O)=O)c1O" YCD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(ccc2CF)C(=O)O)O" YCD SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNc2cc(ccc2CF)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YCD "SYSTEMATIC NAME" ACDLabs 12.01 "4-(fluoromethyl)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid" YCD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-(fluoranylmethyl)-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YCD "Create component" 2021-02-17 RCSB YCD "Modify value order" 2021-08-18 RCSB YCD "Initial release" 2021-08-25 RCSB ##