data_YCP # _chem_comp.id YCP _chem_comp.name "(2S)-piperidine-2-carboxylic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KTJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YCP C C C 0 1 N N N Y N Y -26.684 -34.961 3.962 -1.700 -0.068 0.005 C YCP 1 YCP N N N 0 1 N N N Y Y N -24.648 -36.540 4.593 0.452 -1.193 0.088 N YCP 2 YCP O O O 0 1 N N N Y N Y -27.934 -35.151 3.963 -2.045 -0.924 -0.775 O YCP 3 YCP CA CA C 0 1 N N S Y N N -25.685 -36.136 3.532 -0.247 0.063 0.385 CA YCP 4 YCP CB CB C 0 1 N N N N N N -26.509 -37.404 3.200 0.388 1.204 -0.414 CB YCP 5 YCP CD CD C 0 1 N N N N N N -26.307 -37.851 5.920 2.563 -0.016 -0.313 CD YCP 6 YCP CE CE C 0 1 N N N N N N -25.125 -36.820 5.966 1.865 -1.121 0.483 CE YCP 7 YCP CG CG C 0 1 N N N N N N -26.799 -38.262 4.500 1.868 1.320 -0.039 CG YCP 8 YCP OXT OXT O 0 1 N Y N Y N Y -26.120 -33.737 4.347 -2.609 0.769 0.530 OXT YCP 9 YCP H HN H 0 1 N Y N Y Y N -24.213 -37.378 4.264 -0.007 -1.976 0.529 HN YCP 10 YCP HA HA H 0 1 N N N Y N N -25.129 -35.734 2.672 -0.169 0.279 1.451 HA YCP 11 YCP HB HB H 0 1 N N N N N N -27.467 -37.098 2.755 0.297 0.995 -1.480 HB YCP 12 YCP HBA HBA H 0 1 N N N N N N -25.941 -38.020 2.487 -0.121 2.139 -0.181 HBA YCP 13 YCP HD HD H 0 1 N N N N N N -25.965 -38.766 6.426 3.607 0.047 -0.009 HD YCP 14 YCP HDA HDA H 0 1 N N N N N N -27.160 -37.396 6.444 2.506 -0.244 -1.378 HDA YCP 15 YCP HE HE H 0 1 N N N N N N -24.299 -37.239 6.560 1.933 -0.900 1.548 HE YCP 16 YCP HEA HEA H 0 1 N N N N N N -25.475 -35.885 6.428 2.348 -2.077 0.278 HEA YCP 17 YCP HG HG H 0 1 N N N N N N -27.895 -38.305 4.577 2.334 2.103 -0.638 HG YCP 18 YCP HGA HGA H 0 1 N N N N N N -26.335 -39.241 4.308 1.958 1.567 1.019 HGA YCP 19 YCP HXT HXT H 0 1 N Y N Y N Y -26.811 -33.131 4.588 -3.527 0.649 0.253 HXT YCP 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YCP C O DOUB N N 1 YCP C CA SING N N 2 YCP C OXT SING N N 3 YCP N CA SING N N 4 YCP N CE SING N N 5 YCP CA CB SING N N 6 YCP CB CG SING N N 7 YCP CD CE SING N N 8 YCP CD CG SING N N 9 YCP N H SING N N 10 YCP CA HA SING N N 11 YCP CB HB SING N N 12 YCP CB HBA SING N N 13 YCP CD HD SING N N 14 YCP CD HDA SING N N 15 YCP CE HE SING N N 16 YCP CE HEA SING N N 17 YCP CG HG SING N N 18 YCP CG HGA SING N N 19 YCP OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YCP SMILES_CANONICAL CACTVS 3.352 "OC(=O)[C@@H]1CCCCN1" YCP SMILES CACTVS 3.352 "OC(=O)[CH]1CCCCN1" YCP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1CCN[C@@H](C1)C(=O)O" YCP SMILES "OpenEye OEToolkits" 1.7.0 "C1CCNC(C1)C(=O)O" YCP InChI InChI 1.03 "InChI=1S/C6H11NO2/c8-6(9)5-3-1-2-4-7-5/h5,7H,1-4H2,(H,8,9)/t5-/m0/s1" YCP InChIKey InChI 1.03 HXEACLLIILLPRG-YFKPBYRVSA-N # _pdbx_chem_comp_identifier.comp_id YCP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "(2S)-piperidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YCP "Create component" 2010-01-07 PDBJ YCP "Modify descriptor" 2011-06-04 RCSB YCP "Modify backbone" 2023-11-03 PDBE YCP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id YCP _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #