data_YDI # _chem_comp.id YDI _chem_comp.name "5-[4-(2-DIMETHYLAMINOETHYLOXY)PHENYL]-2-UREIDO-THIOPHENE-3-CARBOXAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-21 _chem_comp.pdbx_modified_date 2012-03-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YDI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDI S01 S01 S 0 1 Y N N 2.704 -3.227 19.948 -2.312 -1.168 0.036 S01 YDI 1 YDI C02 C02 C 0 1 Y N N 3.991 -3.974 19.066 -3.629 -0.089 -0.061 C02 YDI 2 YDI C03 C03 C 0 1 Y N N 3.557 -5.127 18.434 -3.186 1.211 -0.031 C03 YDI 3 YDI C04 C04 C 0 1 Y N N 2.178 -5.359 18.691 -1.797 1.330 0.070 C04 YDI 4 YDI C05 C05 C 0 1 Y N N 1.562 -4.423 19.505 -1.157 0.153 0.118 C05 YDI 5 YDI N06 N06 N 0 1 N N N 5.289 -3.465 19.010 -4.957 -0.469 -0.157 N06 YDI 6 YDI C07 C07 C 0 1 N N N 5.610 -2.228 19.525 -5.284 -1.777 -0.178 C07 YDI 7 YDI N08 N08 N 0 1 N N N 6.854 -1.792 19.161 -6.576 -2.147 -0.271 N08 YDI 8 YDI O09 O09 O 0 1 N N N 4.858 -1.575 20.245 -4.412 -2.622 -0.113 O09 YDI 9 YDI C10 C10 C 0 1 N N N 4.451 -5.924 17.623 -4.087 2.367 -0.098 C10 YDI 10 YDI O11 O11 O 0 1 N N N 5.637 -5.648 17.490 -5.289 2.197 -0.186 O11 YDI 11 YDI N12 N12 N 0 1 N N N 3.828 -6.981 16.992 -3.584 3.616 -0.064 N12 YDI 12 YDI C14 C14 C 0 1 N N N -7.282 -3.661 20.314 8.368 -1.031 -0.326 C14 YDI 13 YDI N15 N15 N 0 1 N N N -6.070 -2.840 20.513 7.088 -0.339 -0.533 N15 YDI 14 YDI C16 C16 C 0 1 N N N -5.599 -2.870 21.920 6.667 0.365 0.686 C16 YDI 15 YDI C17 C17 C 0 1 N N N -4.097 -3.041 21.877 5.186 0.731 0.578 C17 YDI 16 YDI C19 C19 C 0 1 Y N N 0.187 -4.328 19.961 0.308 -0.009 0.225 C19 YDI 17 YDI C20 C20 C 0 1 Y N N -0.248 -3.288 20.762 0.870 -1.287 0.267 C20 YDI 18 YDI C21 C21 C 0 1 Y N N -1.570 -3.193 21.162 2.237 -1.434 0.367 C21 YDI 19 YDI C22 C22 C 0 1 Y N N -2.460 -4.166 20.744 3.055 -0.314 0.424 C22 YDI 20 YDI C2 C2 C 0 1 N N N -6.248 -1.457 20.008 7.167 0.583 -1.673 C2 YDI 21 YDI C23 C23 C 0 1 Y N N -2.038 -5.208 19.946 2.501 0.958 0.382 C23 YDI 22 YDI C24 C24 C 0 1 Y N N -0.722 -5.282 19.553 1.135 1.114 0.278 C24 YDI 23 YDI O1 O1 O 0 1 N N N -3.804 -4.180 21.082 4.403 -0.464 0.523 O1 YDI 24 YDI H06 H06 H 0 1 N N N 6.008 -4.014 18.583 -5.653 0.205 -0.208 H06 YDI 25 YDI H04 H04 H 0 1 N N N 1.648 -6.206 18.280 -1.286 2.281 0.105 H04 YDI 26 YDI H081 H081 H 0 0 N N N 7.187 -0.906 19.483 -7.272 -1.472 -0.323 H081 YDI 27 YDI H082 H082 H 0 0 N N N 7.430 -2.359 18.573 -6.811 -3.088 -0.286 H082 YDI 28 YDI H121 H121 H 0 0 N N N 4.350 -7.577 16.382 -2.626 3.752 0.006 H121 YDI 29 YDI H122 H122 H 0 0 N N N 2.854 -7.151 17.145 -4.179 4.381 -0.108 H122 YDI 30 YDI H141 H141 H 0 0 N N N -7.592 -3.608 19.260 8.287 -1.694 0.535 H141 YDI 31 YDI H142 H142 H 0 0 N N N -7.065 -4.706 20.580 8.613 -1.615 -1.213 H142 YDI 32 YDI H143 H143 H 0 0 N N N -8.092 -3.280 20.954 9.153 -0.296 -0.146 H143 YDI 33 YDI H161 H161 H 0 0 N N N -5.863 -1.933 22.432 6.819 -0.282 1.550 H161 YDI 34 YDI H162 H162 H 0 0 N N N -6.064 -3.707 22.461 7.258 1.273 0.804 H162 YDI 35 YDI H21C H21C H 0 0 N N N -5.325 -0.883 20.176 7.480 0.036 -2.562 H21C YDI 36 YDI H22C H22C H 0 0 N N N -6.471 -1.486 18.931 6.187 1.029 -1.847 H22C YDI 37 YDI H23C H23C H 0 0 N N N -7.081 -0.976 20.542 7.890 1.369 -1.456 H23C YDI 38 YDI H171 H171 H 0 0 N N N -3.631 -2.147 21.437 4.892 1.318 1.448 H171 YDI 39 YDI H172 H172 H 0 0 N N N -3.707 -3.185 22.895 5.021 1.315 -0.328 H172 YDI 40 YDI H20 H20 H 0 1 N N N 0.457 -2.535 21.082 0.234 -2.159 0.223 H20 YDI 41 YDI H24 H24 H 0 1 N N N -0.397 -6.094 18.919 0.705 2.104 0.241 H24 YDI 42 YDI H21 H21 H 0 1 N N N -1.900 -2.376 21.787 2.672 -2.422 0.400 H21 YDI 43 YDI H23 H23 H 0 1 N N N -2.740 -5.965 19.630 3.141 1.827 0.428 H23 YDI 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDI S01 C02 SING Y N 1 YDI S01 C05 SING Y N 2 YDI C02 C03 DOUB Y N 3 YDI C02 N06 SING N N 4 YDI C03 C04 SING Y N 5 YDI C03 C10 SING N N 6 YDI C04 C05 DOUB Y N 7 YDI C05 C19 SING Y N 8 YDI N06 C07 SING N N 9 YDI C07 N08 SING N N 10 YDI C07 O09 DOUB N N 11 YDI C10 O11 DOUB N N 12 YDI C10 N12 SING N N 13 YDI C14 N15 SING N N 14 YDI N15 C16 SING N N 15 YDI N15 C2 SING N N 16 YDI C16 C17 SING N N 17 YDI C17 O1 SING N N 18 YDI C19 C20 SING Y N 19 YDI C19 C24 DOUB Y N 20 YDI C20 C21 DOUB Y N 21 YDI C21 C22 SING Y N 22 YDI C22 C23 DOUB Y N 23 YDI C22 O1 SING N N 24 YDI C23 C24 SING Y N 25 YDI N06 H06 SING N N 26 YDI C04 H04 SING N N 27 YDI N08 H081 SING N N 28 YDI N08 H082 SING N N 29 YDI N12 H121 SING N N 30 YDI N12 H122 SING N N 31 YDI C14 H141 SING N N 32 YDI C14 H142 SING N N 33 YDI C14 H143 SING N N 34 YDI C16 H161 SING N N 35 YDI C16 H162 SING N N 36 YDI C2 H21C SING N N 37 YDI C2 H22C SING N N 38 YDI C2 H23C SING N N 39 YDI C17 H171 SING N N 40 YDI C17 H172 SING N N 41 YDI C20 H20 SING N N 42 YDI C24 H24 SING N N 43 YDI C21 H21 SING N N 44 YDI C23 H23 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDI SMILES ACDLabs 12.01 "O=C(Nc1sc(cc1C(=O)N)c2ccc(OCCN(C)C)cc2)N" YDI SMILES_CANONICAL CACTVS 3.370 "CN(C)CCOc1ccc(cc1)c2sc(NC(N)=O)c(c2)C(N)=O" YDI SMILES CACTVS 3.370 "CN(C)CCOc1ccc(cc1)c2sc(NC(N)=O)c(c2)C(N)=O" YDI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN(C)CCOc1ccc(cc1)c2cc(c(s2)NC(=O)N)C(=O)N" YDI SMILES "OpenEye OEToolkits" 1.7.0 "CN(C)CCOc1ccc(cc1)c2cc(c(s2)NC(=O)N)C(=O)N" YDI InChI InChI 1.03 "InChI=1S/C16H20N4O3S/c1-20(2)7-8-23-11-5-3-10(4-6-11)13-9-12(14(17)21)15(24-13)19-16(18)22/h3-6,9H,7-8H2,1-2H3,(H2,17,21)(H3,18,19,22)" YDI InChIKey InChI 1.03 RFSVVCBVIFWEMZ-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDI "SYSTEMATIC NAME" ACDLabs 12.01 "2-(carbamoylamino)-5-{4-[2-(dimethylamino)ethoxy]phenyl}thiophene-3-carboxamide" YDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-(aminocarbonylamino)-5-[4-(2-dimethylaminoethyloxy)phenyl]thiophene-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDI "Create component" 2011-03-21 EBI YDI "Modify aromatic_flag" 2011-06-04 RCSB YDI "Modify descriptor" 2011-06-04 RCSB #