data_YDJ # _chem_comp.id YDJ _chem_comp.name "5-(3-fluorophenyl)-N-[(3S)-3-piperidyl]-3-ureido-thiophene-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 F N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-22 _chem_comp.pdbx_modified_date 2013-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDJ C1 C1 C 0 1 Y N N 17.910 15.944 12.751 4.505 -3.110 0.127 C1 YDJ 1 YDJ C2 C2 C 0 1 Y N N 16.690 16.097 13.383 3.273 -2.492 0.064 C2 YDJ 2 YDJ C3 C3 C 0 1 Y N N 16.035 17.317 13.393 3.194 -1.099 0.024 C3 YDJ 3 YDJ C4 C4 C 0 1 Y N N 16.608 18.393 12.759 4.364 -0.338 0.048 C4 YDJ 4 YDJ C5 C5 C 0 1 Y N N 17.825 18.238 12.142 5.592 -0.969 0.111 C5 YDJ 5 YDJ C6 C6 C 0 1 Y N N 18.484 17.025 12.126 5.662 -2.352 0.150 C6 YDJ 6 YDJ F1 F1 F 0 1 N N N 18.361 19.305 11.536 6.727 -0.235 0.134 F1 YDJ 7 YDJ C7 C7 C 0 1 Y N N 14.760 17.464 14.073 1.877 -0.431 -0.043 C7 YDJ 8 YDJ C8 C8 C 0 1 Y N N 14.215 16.646 15.039 1.684 0.916 -0.086 C8 YDJ 9 YDJ C9 C9 C 0 1 Y N N 12.922 17.062 15.473 0.368 1.308 -0.147 C9 YDJ 10 YDJ C10 C10 C 0 1 Y N N 12.509 18.214 14.835 -0.534 0.272 -0.154 C10 YDJ 11 YDJ S1 S1 S 0 1 Y N N 13.694 18.772 13.717 0.327 -1.260 -0.087 S1 YDJ 12 YDJ C11 C11 C 0 1 N N N 11.235 18.862 15.064 -1.942 0.415 -0.211 C11 YDJ 13 YDJ O1 O1 O 0 1 N N N 10.386 18.391 15.819 -2.440 1.526 -0.259 O1 YDJ 14 YDJ N1 N1 N 0 1 N N N 10.996 19.994 14.358 -2.731 -0.678 -0.212 N1 YDJ 15 YDJ C12 C12 C 0 1 N N S 9.640 20.478 14.308 -4.187 -0.530 -0.272 C12 YDJ 16 YDJ C13 C13 C 0 1 N N N 9.618 21.988 14.265 -4.805 -1.795 -0.873 C13 YDJ 17 YDJ C14 C14 C 0 1 N N N 8.223 22.538 13.986 -6.330 -1.657 -0.876 C14 YDJ 18 YDJ C15 C15 C 0 1 N N N 7.667 21.953 12.706 -6.819 -1.414 0.554 C15 YDJ 19 YDJ N2 N2 N 0 1 N N N 7.641 20.480 12.912 -6.199 -0.192 1.084 N2 YDJ 20 YDJ C16 C16 C 0 1 N N N 8.992 19.884 13.077 -4.737 -0.320 1.141 C16 YDJ 21 YDJ N3 N3 N 0 1 N N N 12.096 16.450 16.426 -0.021 2.649 -0.196 N3 YDJ 22 YDJ C17 C17 C 0 1 N N N 12.366 15.202 16.959 0.898 3.622 -0.040 C17 YDJ 23 YDJ O2 O2 O 0 1 N N N 13.447 14.645 16.886 2.076 3.338 0.051 O2 YDJ 24 YDJ N4 N4 N 0 1 N N N 11.292 14.609 17.582 0.510 4.912 0.016 N4 YDJ 25 YDJ H1 H1 H 0 1 N N N 18.407 14.985 12.748 4.565 -4.187 0.162 H1 YDJ 26 YDJ H2 H2 H 0 1 N N N 16.239 15.249 13.878 2.370 -3.085 0.046 H2 YDJ 27 YDJ H6 H6 H 0 1 N N N 19.438 16.927 11.629 6.623 -2.841 0.199 H6 YDJ 28 YDJ H4 H4 H 0 1 N N N 16.107 19.350 12.746 4.310 0.740 0.017 H4 YDJ 29 YDJ H8 H8 H 0 1 N N N 14.719 15.774 15.430 2.502 1.622 -0.073 H8 YDJ 30 YDJ H3 H3 H 0 1 N N N 11.278 16.936 16.733 -0.951 2.879 -0.344 H3 YDJ 31 YDJ HA HA H 0 1 N N N 11.735 20.476 13.888 -2.334 -1.562 -0.174 HA YDJ 32 YDJ H12 H12 H 0 1 N N N 9.085 20.176 15.208 -4.440 0.329 -0.893 H12 YDJ 33 YDJ H131 H131 H 0 0 N N N 9.957 22.371 15.239 -4.449 -1.925 -1.895 H131 YDJ 34 YDJ H132 H132 H 0 0 N N N 10.294 22.325 13.465 -4.519 -2.660 -0.274 H132 YDJ 35 YDJ H161 H161 H 0 0 N N N 9.606 20.106 12.191 -4.471 -1.173 1.765 H161 YDJ 36 YDJ H162 H162 H 0 0 N N N 8.904 18.794 13.194 -4.310 0.588 1.566 H162 YDJ 37 YDJ H141 H141 H 0 0 N N N 7.558 22.274 14.821 -6.618 -0.815 -1.506 H141 YDJ 38 YDJ H142 H142 H 0 0 N N N 8.281 23.632 13.887 -6.778 -2.572 -1.263 H142 YDJ 39 YDJ H151 H151 H 0 0 N N N 6.655 22.336 12.510 -7.903 -1.301 0.554 H151 YDJ 40 YDJ H152 H152 H 0 0 N N N 8.305 22.215 11.849 -6.543 -2.262 1.181 H152 YDJ 41 YDJ HB HB H 0 1 N N N 7.113 20.290 13.739 -6.471 0.614 0.543 HB YDJ 42 YDJ H41N H41N H 0 0 N N N 11.389 13.700 17.988 -0.430 5.139 -0.057 H41N YDJ 43 YDJ H42N H42N H 0 0 N N N 10.415 15.087 17.629 1.171 5.613 0.128 H42N YDJ 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDJ C1 C2 SING Y N 1 YDJ C1 C6 DOUB Y N 2 YDJ C2 C3 DOUB Y N 3 YDJ C3 C4 SING Y N 4 YDJ C3 C7 SING Y N 5 YDJ C4 C5 DOUB Y N 6 YDJ C5 C6 SING Y N 7 YDJ C5 F1 SING N N 8 YDJ C7 C8 DOUB Y N 9 YDJ C7 S1 SING Y N 10 YDJ C8 C9 SING Y N 11 YDJ C9 C10 DOUB Y N 12 YDJ C9 N3 SING N N 13 YDJ C10 S1 SING Y N 14 YDJ C10 C11 SING N N 15 YDJ C11 O1 DOUB N N 16 YDJ C11 N1 SING N N 17 YDJ N1 C12 SING N N 18 YDJ C12 C13 SING N N 19 YDJ C12 C16 SING N N 20 YDJ C13 C14 SING N N 21 YDJ C14 C15 SING N N 22 YDJ C15 N2 SING N N 23 YDJ N2 C16 SING N N 24 YDJ N3 C17 SING N N 25 YDJ C17 O2 DOUB N N 26 YDJ C17 N4 SING N N 27 YDJ C1 H1 SING N N 28 YDJ C2 H2 SING N N 29 YDJ C6 H6 SING N N 30 YDJ C4 H4 SING N N 31 YDJ C8 H8 SING N N 32 YDJ N3 H3 SING N N 33 YDJ N1 HA SING N N 34 YDJ C12 H12 SING N N 35 YDJ C13 H131 SING N N 36 YDJ C13 H132 SING N N 37 YDJ C16 H161 SING N N 38 YDJ C16 H162 SING N N 39 YDJ C14 H141 SING N N 40 YDJ C14 H142 SING N N 41 YDJ C15 H151 SING N N 42 YDJ C15 H152 SING N N 43 YDJ N2 HB SING N N 44 YDJ N4 H41N SING N N 45 YDJ N4 H42N SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDJ SMILES ACDLabs 12.01 "O=C(c1sc(cc1NC(=O)N)c2cccc(F)c2)NC3CCCNC3" YDJ SMILES_CANONICAL CACTVS 3.370 "NC(=O)Nc1cc(sc1C(=O)N[C@H]2CCCNC2)c3cccc(F)c3" YDJ SMILES CACTVS 3.370 "NC(=O)Nc1cc(sc1C(=O)N[CH]2CCCNC2)c3cccc(F)c3" YDJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)F)c2cc(c(s2)C(=O)N[C@H]3CCCNC3)NC(=O)N" YDJ SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)F)c2cc(c(s2)C(=O)NC3CCCNC3)NC(=O)N" YDJ InChI InChI 1.03 "InChI=1S/C17H19FN4O2S/c18-11-4-1-3-10(7-11)14-8-13(22-17(19)24)15(25-14)16(23)21-12-5-2-6-20-9-12/h1,3-4,7-8,12,20H,2,5-6,9H2,(H,21,23)(H3,19,22,24)/t12-/m0/s1" YDJ InChIKey InChI 1.03 IAYGCINLNONXHY-LBPRGKRZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDJ "SYSTEMATIC NAME" ACDLabs 12.01 "3-(carbamoylamino)-5-(3-fluorophenyl)-N-[(3S)-piperidin-3-yl]thiophene-2-carboxamide" YDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "3-(aminocarbonylamino)-5-(3-fluorophenyl)-N-[(3S)-piperidin-3-yl]thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDJ "Create component" 2011-03-22 EBI YDJ "Modify aromatic_flag" 2011-06-04 RCSB YDJ "Modify descriptor" 2011-06-04 RCSB YDJ "Modify name" 2013-03-15 EBI #