data_YDM # _chem_comp.id YDM _chem_comp.name "1-[6-(dimethylamino)naphthalen-2-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "acrylodan, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-26 _chem_comp.pdbx_modified_date 2023-08-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 227.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YDM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FXT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YDM C10 C1 C 0 1 Y N N 86.893 5.853 95.276 2.892 -0.096 0.002 C10 YDM 1 YDM C13 C2 C 0 1 N N N 88.509 7.393 96.435 5.234 -0.896 0.006 C13 YDM 2 YDM C15 C3 C 0 1 Y N N 85.344 4.378 94.184 1.143 -1.740 -0.009 C15 YDM 3 YDM C17 C4 C 0 1 Y N N 85.159 4.323 91.728 -1.188 -1.007 -0.003 C17 YDM 4 YDM C01 C5 C 0 1 N N N 82.642 3.783 88.419 -5.969 0.270 0.010 C01 YDM 5 YDM C02 C6 C 0 1 N N N 83.904 3.254 89.101 -4.554 0.853 0.004 C02 YDM 6 YDM C03 C7 C 0 1 N N N 85.005 4.317 89.173 -3.549 -0.270 0.003 C03 YDM 7 YDM C05 C8 C 0 1 Y N N 85.579 4.808 90.498 -2.111 0.032 -0.002 C05 YDM 8 YDM C06 C9 C 0 1 Y N N 86.549 5.796 90.445 -1.677 1.373 -0.007 C06 YDM 9 YDM C07 C10 C 0 1 Y N N 87.139 6.303 91.591 -0.355 1.674 -0.013 C07 YDM 10 YDM C08 C11 C 0 1 Y N N 86.718 5.811 92.850 0.604 0.643 -0.014 C08 YDM 11 YDM C09 C12 C 0 1 Y N N 87.306 6.332 94.040 1.976 0.935 -0.003 C09 YDM 12 YDM C12 C13 C 0 1 N N N 87.035 5.856 97.778 4.708 1.586 0.013 C12 YDM 13 YDM C14 C14 C 0 1 Y N N 85.910 4.871 95.349 2.466 -1.431 -0.004 C14 YDM 14 YDM C16 C15 C 0 1 Y N N 85.757 4.853 92.913 0.181 -0.712 -0.009 C16 YDM 15 YDM N11 N1 N 0 1 N N N 87.479 6.372 96.496 4.255 0.193 0.007 N11 YDM 16 YDM O04 O1 O 0 1 N N N 85.448 4.784 88.180 -3.927 -1.422 0.008 O04 YDM 17 YDM H1 H1 H 0 1 N N N 88.826 7.656 97.455 5.480 -1.163 -1.022 H1 YDM 18 YDM H2 H2 H 0 1 N N N 89.372 7.010 95.870 6.137 -0.573 0.524 H2 YDM 19 YDM H3 H3 H 0 1 N N N 88.110 8.287 95.933 4.814 -1.763 0.516 H3 YDM 20 YDM H4 H4 H 0 1 N N N 84.577 3.620 94.245 0.830 -2.774 -0.014 H4 YDM 21 YDM H5 H5 H 0 1 N N N 84.396 3.561 91.789 -1.523 -2.033 0.001 H5 YDM 22 YDM H6 H6 H 0 1 N N N 81.881 2.990 88.389 -6.106 -0.341 0.902 H6 YDM 23 YDM H7 H7 H 0 1 N N N 82.253 4.643 88.984 -6.696 1.082 0.011 H7 YDM 24 YDM H8 H8 H 0 1 N N N 82.884 4.097 87.393 -6.112 -0.345 -0.878 H8 YDM 25 YDM H9 H9 H 0 1 N N N 83.649 2.937 90.123 -4.417 1.464 -0.888 H9 YDM 26 YDM H10 H10 H 0 1 N N N 84.280 2.391 88.532 -4.411 1.469 0.892 H10 YDM 27 YDM H11 H11 H 0 1 N N N 86.854 6.182 89.483 -2.406 2.169 -0.007 H11 YDM 28 YDM H12 H12 H 0 1 N N N 87.906 7.060 91.525 -0.037 2.707 -0.016 H12 YDM 29 YDM H13 H13 H 0 1 N N N 88.068 7.095 93.980 2.313 1.962 0.002 H13 YDM 30 YDM H14 H14 H 0 1 N N N 87.584 6.361 98.587 4.818 1.928 1.042 H14 YDM 31 YDM H15 H15 H 0 1 N N N 85.957 6.042 97.895 5.669 1.657 -0.498 H15 YDM 32 YDM H16 H16 H 0 1 N N N 87.227 4.774 97.824 3.976 2.209 -0.501 H16 YDM 33 YDM H17 H17 H 0 1 N N N 85.590 4.495 96.309 3.199 -2.224 -0.004 H17 YDM 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YDM O04 C03 DOUB N N 1 YDM C01 C02 SING N N 2 YDM C02 C03 SING N N 3 YDM C03 C05 SING N N 4 YDM C06 C05 DOUB Y N 5 YDM C06 C07 SING Y N 6 YDM C05 C17 SING Y N 7 YDM C07 C08 DOUB Y N 8 YDM C17 C16 DOUB Y N 9 YDM C08 C16 SING Y N 10 YDM C08 C09 SING Y N 11 YDM C16 C15 SING Y N 12 YDM C09 C10 DOUB Y N 13 YDM C15 C14 DOUB Y N 14 YDM C10 C14 SING Y N 15 YDM C10 N11 SING N N 16 YDM C13 N11 SING N N 17 YDM N11 C12 SING N N 18 YDM C13 H1 SING N N 19 YDM C13 H2 SING N N 20 YDM C13 H3 SING N N 21 YDM C15 H4 SING N N 22 YDM C17 H5 SING N N 23 YDM C01 H6 SING N N 24 YDM C01 H7 SING N N 25 YDM C01 H8 SING N N 26 YDM C02 H9 SING N N 27 YDM C02 H10 SING N N 28 YDM C06 H11 SING N N 29 YDM C07 H12 SING N N 30 YDM C09 H13 SING N N 31 YDM C12 H14 SING N N 32 YDM C12 H15 SING N N 33 YDM C12 H16 SING N N 34 YDM C14 H17 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YDM SMILES ACDLabs 12.01 "CCC(=O)c1ccc2cc(ccc2c1)N(C)C" YDM InChI InChI 1.06 "InChI=1S/C15H17NO/c1-4-15(17)13-6-5-12-10-14(16(2)3)8-7-11(12)9-13/h5-10H,4H2,1-3H3" YDM InChIKey InChI 1.06 MPPQGYCZBNURDG-UHFFFAOYSA-N YDM SMILES_CANONICAL CACTVS 3.385 "CCC(=O)c1ccc2cc(ccc2c1)N(C)C" YDM SMILES CACTVS 3.385 "CCC(=O)c1ccc2cc(ccc2c1)N(C)C" YDM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)c1ccc2cc(ccc2c1)N(C)C" YDM SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)c1ccc2cc(ccc2c1)N(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YDM "SYSTEMATIC NAME" ACDLabs 12.01 "1-[6-(dimethylamino)naphthalen-2-yl]propan-1-one" YDM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[6-(dimethylamino)naphthalen-2-yl]propan-1-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YDM _pdbx_chem_comp_synonyms.name "acrylodan, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YDM "Create component" 2023-01-26 RCSB YDM "Initial release" 2023-08-30 RCSB #