data_YFK # _chem_comp.id YFK _chem_comp.name "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-1-[(3S)-2-oxopyrrolidin-3-yl]but-3-en-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-26 _chem_comp.pdbx_modified_date 2023-08-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YFK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8FY7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YFK C04 C1 C 0 1 N N S 8.825 10.861 27.486 3.987 -0.209 -1.338 C04 YFK 1 YFK C05 C2 C 0 1 N N N 7.826 10.771 26.308 5.186 0.351 -0.570 C05 YFK 2 YFK C06 C3 C 0 1 N N S 7.406 12.106 25.850 4.756 1.595 0.210 C06 YFK 3 YFK C09 C4 C 0 1 N N N 5.564 13.496 26.152 4.884 3.980 -0.012 C09 YFK 4 YFK C10 C5 C 0 1 N N N 6.524 12.784 26.888 4.362 2.733 -0.760 C10 YFK 5 YFK C13 C6 C 0 1 N N N 8.493 9.304 29.233 3.859 -2.522 -2.109 C13 YFK 6 YFK C14 C7 C 0 1 N N S 11.918 13.187 27.004 0.635 -1.157 0.247 C14 YFK 7 YFK C15 C8 C 0 1 N N N 12.981 12.917 28.094 0.640 -2.676 0.434 C15 YFK 8 YFK C16 C9 C 0 1 N N N 14.430 13.252 27.637 1.962 -3.107 1.072 C16 YFK 9 YFK C17 C10 C 0 1 N N N 14.910 12.259 26.560 2.039 -2.566 2.501 C17 YFK 10 YFK C18 C11 C 0 1 N N N 15.412 13.231 28.848 2.039 -4.635 1.101 C18 YFK 11 YFK C20 C12 C 0 1 N N N 11.165 15.077 25.526 -1.653 -0.425 0.650 C20 YFK 12 YFK C21 C13 C 0 1 Y N N 11.137 16.577 25.244 -3.004 -0.102 0.172 C21 YFK 13 YFK C23 C14 C 0 1 Y N N 11.574 18.804 25.301 -5.173 0.458 0.116 C23 YFK 14 YFK C24 C15 C 0 1 Y N N 10.722 18.531 24.252 -4.731 0.272 -1.208 C24 YFK 15 YFK C25 C16 C 0 1 Y N N 10.225 19.590 23.440 -5.624 0.448 -2.262 C25 YFK 16 YFK C26 C17 C 0 1 Y N N 10.629 20.911 23.697 -6.931 0.801 -2.007 C26 YFK 17 YFK C28 C18 C 0 1 Y N N 11.981 20.143 25.570 -6.510 0.820 0.358 C28 YFK 18 YFK O32 O1 O 0 1 N N N 10.670 14.312 24.795 -1.413 -0.420 1.843 O32 YFK 19 YFK C02 C19 C 0 1 N N N 10.575 12.718 27.515 1.687 -0.772 -0.761 C02 YFK 20 YFK C07 C20 C 0 1 N N N 6.427 11.893 24.591 5.923 2.160 0.990 C07 YFK 21 YFK C12 C21 C 0 1 N N N 9.081 9.434 28.024 4.438 -1.351 -2.211 C12 YFK 22 YFK C22 C22 C 0 1 Y N N 11.856 17.556 25.928 -4.065 0.218 0.960 C22 YFK 23 YFK C27 C23 C 0 1 Y N N 11.504 21.188 24.766 -7.374 0.987 -0.706 C27 YFK 24 YFK C30 C24 C 0 1 N N N 13.523 21.634 26.695 -8.319 1.371 1.797 C30 YFK 25 YFK N03 N1 N 0 1 N N N 10.097 11.416 27.048 2.980 -0.688 -0.388 N03 YFK 26 YFK N08 N2 N 0 1 N N N 5.356 12.703 24.801 5.974 3.496 0.844 N08 YFK 27 YFK N19 N3 N 0 1 N N N 11.799 14.595 26.728 -0.681 -0.728 -0.232 N19 YFK 28 YFK N31 N4 N 0 1 Y N N 10.502 17.168 24.237 -3.400 -0.068 -1.153 N31 YFK 29 YFK O01 O2 O 0 1 N N N 9.957 13.417 28.261 1.371 -0.537 -1.908 O01 YFK 30 YFK O11 O3 O 0 1 N N N 6.597 11.149 23.655 6.699 1.504 1.652 O11 YFK 31 YFK O29 O4 O 0 1 N N N 12.860 20.379 26.653 -6.948 1.005 1.630 O29 YFK 32 YFK H041 H1 H 0 0 N N N 8.389 11.478 28.286 3.555 0.575 -1.960 H041 YFK 33 YFK H051 H2 H 0 0 N N N 6.938 10.210 26.635 5.557 -0.403 0.124 H051 YFK 34 YFK H052 H3 H 0 0 N N N 8.307 10.242 25.472 5.975 0.618 -1.273 H052 YFK 35 YFK H061 H4 H 0 0 N N N 8.260 12.740 25.568 3.927 1.359 0.877 H061 YFK 36 YFK H091 H5 H 0 0 N N N 5.924 14.514 25.943 5.261 4.716 -0.722 H091 YFK 37 YFK H092 H6 H 0 0 N N N 4.618 13.548 26.711 4.090 4.415 0.595 H092 YFK 38 YFK H101 H7 H 0 0 N N N 6.039 12.034 27.530 4.863 2.617 -1.721 H101 YFK 39 YFK H102 H8 H 0 0 N N N 7.119 13.469 27.510 3.281 2.780 -0.888 H102 YFK 40 YFK H131 H9 H 0 0 N N N 7.953 10.134 29.663 4.182 -3.340 -2.735 H131 YFK 41 YFK H1 H10 H 0 1 N N N 8.563 8.370 29.770 3.057 -2.668 -1.400 H1 YFK 42 YFK H141 H12 H 0 0 N N N 12.183 12.632 26.092 0.851 -0.673 1.200 H141 YFK 43 YFK H151 H13 H 0 0 N N N 12.742 13.531 28.975 -0.188 -2.965 1.081 H151 YFK 44 YFK H152 H14 H 0 0 N N N 12.938 11.852 28.367 0.529 -3.161 -0.536 H152 YFK 45 YFK H161 H15 H 0 0 N N N 14.433 14.264 27.206 2.793 -2.712 0.488 H161 YFK 46 YFK H172 H16 H 0 0 N N N 15.935 12.516 26.254 3.010 -2.811 2.931 H172 YFK 47 YFK H173 H17 H 0 0 N N N 14.895 11.238 26.970 1.911 -1.483 2.486 H173 YFK 48 YFK H171 H18 H 0 0 N N N 14.242 12.313 25.688 1.250 -3.016 3.103 H171 YFK 49 YFK H182 H19 H 0 0 N N N 15.066 13.941 29.614 1.985 -5.021 0.083 H182 YFK 50 YFK H181 H20 H 0 0 N N N 15.445 12.218 29.275 2.981 -4.942 1.556 H181 YFK 51 YFK H183 H21 H 0 0 N N N 16.418 13.519 28.509 1.208 -5.030 1.684 H183 YFK 52 YFK H251 H22 H 0 0 N N N 9.541 19.379 22.631 -5.292 0.307 -3.280 H251 YFK 53 YFK H261 H23 H 0 0 N N N 10.268 21.716 23.074 -7.618 0.936 -2.830 H261 YFK 54 YFK H2 H24 H 0 1 N N N 9.641 8.664 27.514 5.240 -1.205 -2.920 H2 YFK 55 YFK H221 H26 H 0 0 N N N 12.506 17.398 26.776 -4.061 0.278 2.039 H221 YFK 56 YFK H271 H27 H 0 0 N N N 11.807 22.205 24.966 -8.402 1.265 -0.523 H271 YFK 57 YFK H303 H28 H 0 0 N N N 14.169 21.678 27.584 -8.957 0.592 1.378 H303 YFK 58 YFK H301 H29 H 0 0 N N N 14.136 21.755 25.790 -8.537 1.487 2.859 H301 YFK 59 YFK H302 H30 H 0 0 N N N 12.777 22.441 26.743 -8.509 2.312 1.281 H302 YFK 60 YFK H031 H31 H 0 0 N N N 10.661 10.892 26.409 3.243 -0.946 0.510 H031 YFK 61 YFK H081 H32 H 0 0 N N N 4.563 12.784 24.197 6.644 4.066 1.251 H081 YFK 62 YFK H191 H33 H 0 0 N N N 12.165 15.254 27.385 -0.852 -0.662 -1.185 H191 YFK 63 YFK H311 H34 H 0 0 N N N 9.941 16.690 23.561 -2.833 -0.257 -1.917 H311 YFK 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YFK C25 C26 DOUB Y N 1 YFK C25 C24 SING Y N 2 YFK O11 C07 DOUB N N 3 YFK C26 C27 SING Y N 4 YFK N31 C24 SING Y N 5 YFK N31 C21 SING Y N 6 YFK C24 C23 DOUB Y N 7 YFK C07 N08 SING N N 8 YFK C07 C06 SING N N 9 YFK C27 C28 DOUB Y N 10 YFK O32 C20 DOUB N N 11 YFK N08 C09 SING N N 12 YFK C21 C20 SING N N 13 YFK C21 C22 DOUB Y N 14 YFK C23 C28 SING Y N 15 YFK C23 C22 SING Y N 16 YFK C20 N19 SING N N 17 YFK C28 O29 SING N N 18 YFK C06 C05 SING N N 19 YFK C06 C10 SING N N 20 YFK C09 C10 SING N N 21 YFK C05 C04 SING N N 22 YFK C17 C16 SING N N 23 YFK O29 C30 SING N N 24 YFK N19 C14 SING N N 25 YFK C14 C02 SING N N 26 YFK C14 C15 SING N N 27 YFK N03 C04 SING N N 28 YFK N03 C02 SING N N 29 YFK C04 C12 SING N N 30 YFK C02 O01 DOUB N N 31 YFK C16 C15 SING N N 32 YFK C16 C18 SING N N 33 YFK C12 C13 DOUB N N 34 YFK C04 H041 SING N N 35 YFK C05 H051 SING N N 36 YFK C05 H052 SING N N 37 YFK C06 H061 SING N N 38 YFK C09 H091 SING N N 39 YFK C09 H092 SING N N 40 YFK C10 H101 SING N N 41 YFK C10 H102 SING N N 42 YFK C13 H131 SING N N 43 YFK C13 H1 SING N N 44 YFK C14 H141 SING N N 45 YFK C15 H151 SING N N 46 YFK C15 H152 SING N N 47 YFK C16 H161 SING N N 48 YFK C17 H172 SING N N 49 YFK C17 H173 SING N N 50 YFK C17 H171 SING N N 51 YFK C18 H182 SING N N 52 YFK C18 H181 SING N N 53 YFK C18 H183 SING N N 54 YFK C25 H251 SING N N 55 YFK C26 H261 SING N N 56 YFK C12 H2 SING N N 57 YFK C22 H221 SING N N 58 YFK C27 H271 SING N N 59 YFK C30 H303 SING N N 60 YFK C30 H301 SING N N 61 YFK C30 H302 SING N N 62 YFK N03 H031 SING N N 63 YFK N08 H081 SING N N 64 YFK N19 H191 SING N N 65 YFK N31 H311 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YFK SMILES ACDLabs 12.01 "COc1cccc2[NH]c(cc12)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=C" YFK InChI InChI 1.06 "InChI=1S/C24H32N4O4/c1-5-16(12-15-9-10-25-22(15)29)26-23(30)19(11-14(2)3)28-24(31)20-13-17-18(27-20)7-6-8-21(17)32-4/h5-8,13-16,19,27H,1,9-12H2,2-4H3,(H,25,29)(H,26,30)(H,28,31)/t15-,16+,19-/m0/s1" YFK InChIKey InChI 1.06 UWAHXCKRRCFZCB-FCEWJHQRSA-N YFK SMILES_CANONICAL CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C" YFK SMILES CACTVS 3.385 "COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=C" YFK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=C)NC(=O)c2cc3c([nH]2)cccc3OC" YFK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=C)NC(=O)c2cc3c([nH]2)cccc3OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YFK "SYSTEMATIC NAME" ACDLabs 12.01 "4-methoxy-N-[(2S)-4-methyl-1-oxo-1-({(2S)-1-[(3S)-2-oxopyrrolidin-3-yl]but-3-en-2-yl}amino)pentan-2-yl]-1H-indole-2-carboxamide" YFK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methoxy-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YFK "Create component" 2023-01-26 RCSB YFK "Initial release" 2023-08-30 RCSB #