data_YHA # _chem_comp.id YHA _chem_comp.name Homocitrulline _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H15 N3 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms N~6~-carbamoyl-L-lysine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-04 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 189.212 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YHA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LXG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YHA N N1 N 0 1 N N N Y Y N -41.659 -3.019 -6.862 -2.865 1.770 0.257 N YHA 1 YHA CA C1 C 0 1 N N S Y N N -42.230 -1.892 -7.651 -2.832 0.443 -0.374 CA YHA 2 YHA C C2 C 0 1 N N N Y N Y -41.871 -0.568 -6.883 -4.098 -0.304 -0.041 C YHA 3 YHA O O1 O 0 1 N N N Y N Y -41.888 0.455 -7.468 -4.765 0.032 0.909 O YHA 4 YHA CB C3 C 0 1 N N N N N N -43.710 -2.100 -7.888 -1.626 -0.340 0.149 CB YHA 5 YHA CG C4 C 0 1 N N N N N N -44.029 -3.197 -8.940 -0.336 0.353 -0.296 CG YHA 6 YHA CD C5 C 0 1 N N N N N N -45.564 -3.451 -9.236 0.870 -0.430 0.227 CD YHA 7 YHA CE C6 C 0 1 N N N N N N -45.869 -4.790 -9.958 2.159 0.263 -0.218 CE YHA 8 YHA NZ N2 N 0 1 N N N N N N -44.781 -5.011 -10.850 3.315 -0.486 0.282 NZ YHA 9 YHA CX C7 C 0 1 N N N N N N -43.907 -6.108 -10.772 4.564 -0.060 0.011 CX YHA 10 YHA NQ N3 N 0 1 N N N N N N -44.066 -7.087 -9.852 5.626 -0.749 0.472 NQ YHA 11 YHA OQ O2 O 0 1 N N N N N N -42.988 -6.172 -11.595 4.732 0.947 -0.649 OQ YHA 12 YHA H2 H1 H 0 1 N Y N Y Y N -40.682 -2.863 -6.716 -3.616 2.330 -0.120 H2 YHA 13 YHA H H2 H 0 1 N N N Y Y N -42.123 -3.076 -5.978 -2.941 1.692 1.260 H YHA 14 YHA HA H4 H 0 1 N N N Y N N -41.726 -1.857 -8.628 -2.750 0.556 -1.455 HA YHA 15 YHA HB2 H6 H 0 1 N N N N N N -44.142 -1.150 -8.236 -1.661 -0.376 1.238 HB2 YHA 16 YHA HB3 H7 H 0 1 N N N N N N -44.177 -2.388 -6.934 -1.650 -1.354 -0.249 HB3 YHA 17 YHA HG2 H8 H 0 1 N N N N N N -43.594 -4.142 -8.583 -0.301 0.390 -1.385 HG2 YHA 18 YHA HG3 H9 H 0 1 N N N N N N -43.548 -2.906 -9.885 -0.312 1.367 0.103 HG3 YHA 19 YHA HD2 H10 H 0 1 N N N N N N -45.932 -2.629 -9.867 0.835 -0.466 1.316 HD2 YHA 20 YHA HD3 H11 H 0 1 N N N N N N -46.104 -3.447 -8.277 0.846 -1.444 -0.172 HD3 YHA 21 YHA HE2 H12 H 0 1 N N N N N N -46.813 -4.716 -10.518 2.195 0.300 -1.307 HE2 YHA 22 YHA HE3 H13 H 0 1 N N N N N N -45.938 -5.611 -9.229 2.184 1.277 0.180 HE3 YHA 23 YHA HZ1 H14 H 0 1 N N N N N N -44.630 -4.343 -11.578 3.180 -1.290 0.809 HZ1 YHA 24 YHA HQ2 H15 H 0 1 N N N N N N -43.439 -7.866 -9.837 5.492 -1.552 0.999 HQ2 YHA 25 YHA HQ1 H16 H 0 1 N N N N N N -44.811 -7.032 -9.187 6.525 -0.442 0.277 HQ1 YHA 26 YHA OXT OXT O 0 1 N Y N Y N Y -41.524 -0.648 -5.594 -4.484 -1.341 -0.799 OXT YHA 27 YHA HXT H17 H 0 1 N Y N Y N Y -41.310 0.219 -5.269 -5.303 -1.789 -0.546 H1 YHA 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YHA OQ CX DOUB N N 1 YHA NZ CX SING N N 2 YHA NZ CE SING N N 3 YHA CX NQ SING N N 4 YHA CE CD SING N N 5 YHA CD CG SING N N 6 YHA CG CB SING N N 7 YHA CB CA SING N N 8 YHA CA C SING N N 9 YHA CA N SING N N 10 YHA O C DOUB N N 11 YHA N H2 SING N N 12 YHA N H SING N N 13 YHA CA HA SING N N 14 YHA CB HB2 SING N N 15 YHA CB HB3 SING N N 16 YHA CG HG2 SING N N 17 YHA CG HG3 SING N N 18 YHA CD HD2 SING N N 19 YHA CD HD3 SING N N 20 YHA CE HE2 SING N N 21 YHA CE HE3 SING N N 22 YHA NZ HZ1 SING N N 23 YHA NQ HQ2 SING N N 24 YHA NQ HQ1 SING N N 25 YHA C OXT SING N N 26 YHA OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YHA SMILES ACDLabs 12.01 "NC(CCCCNC(N)=O)C(=O)O" YHA InChI InChI 1.03 "InChI=1S/C7H15N3O3/c8-5(6(11)12)3-1-2-4-10-7(9)13/h5H,1-4,8H2,(H,11,12)(H3,9,10,13)/t5-/m0/s1" YHA InChIKey InChI 1.03 XIGSAGMEBXLVJJ-YFKPBYRVSA-N YHA SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(N)=O)C(O)=O" YHA SMILES CACTVS 3.385 "N[CH](CCCCNC(N)=O)C(O)=O" YHA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)N)C[C@@H](C(=O)O)N" YHA SMILES "OpenEye OEToolkits" 2.0.7 "C(CCNC(=O)N)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YHA "SYSTEMATIC NAME" ACDLabs 12.01 N~6~-carbamoyl-L-lysine YHA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-6-(aminocarbonylamino)-2-azanyl-hexanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YHA _pdbx_chem_comp_synonyms.name N~6~-carbamoyl-L-lysine _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YHA "Create component" 2021-03-04 RCSB YHA "Initial release" 2022-05-25 RCSB YHA "Modify backbone" 2023-11-03 PDBE #