data_YHQ # _chem_comp.id YHQ _chem_comp.name "5'-O-{(R)-hydroxy[(propan-2-yl)oxy]phosphoryl}adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YHQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8G0U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YHQ C1 C1 C 0 1 N N S -14.171 8.240 -25.274 -0.291 -2.583 -0.595 C1 YHQ 1 YHQ C2 C2 C 0 1 N N R -15.149 8.205 -26.441 -1.741 -2.081 -0.409 C2 YHQ 2 YHQ C3 C3 C 0 1 N N R -15.370 6.704 -26.589 -1.585 -0.775 0.401 C3 YHQ 3 YHQ C4 C4 C 0 1 Y N N -16.420 5.238 -24.785 -2.345 1.205 -0.966 C4 YHQ 4 YHQ C5 C5 C 0 1 Y N N -18.483 5.670 -25.061 -4.404 1.423 -0.322 C5 YHQ 5 YHQ C6 C6 C 0 1 Y N N -17.807 6.427 -25.999 -3.859 0.338 0.383 C6 YHQ 6 YHQ O1 O1 O 0 1 N N N -13.378 9.417 -25.203 -0.122 -3.863 0.017 O1 YHQ 7 YHQ C7 C7 C 0 1 Y N N -19.675 7.283 -26.786 -5.877 0.031 1.438 C7 YHQ 8 YHQ C8 C8 C 0 1 Y N N -19.886 5.766 -25.048 -5.744 1.769 -0.075 C8 YHQ 9 YHQ C9 C9 C 0 1 N N R -13.275 7.035 -25.585 0.572 -1.522 0.123 C9 YHQ 10 YHQ C10 C10 C 0 1 N N N -12.544 6.469 -24.393 1.874 -1.286 -0.645 C10 YHQ 11 YHQ C11 C11 C 0 1 N N N -12.754 3.186 -22.476 6.204 1.461 0.607 C11 YHQ 12 YHQ C12 C12 C 0 1 N N N -13.618 3.300 -21.263 6.200 2.991 0.652 C12 YHQ 13 YHQ C13 C13 C 0 1 N N N -13.540 3.202 -23.743 7.039 0.919 1.768 C13 YHQ 14 YHQ O2 O2 O 0 1 N N N -14.176 6.053 -26.147 -0.242 -0.325 0.121 O2 YHQ 15 YHQ O3 O3 O 0 1 N N N -14.576 8.695 -27.637 -2.512 -3.038 0.321 O3 YHQ 16 YHQ O4 O4 O 0 1 N N N -11.712 5.369 -24.803 2.707 -0.390 0.094 O4 YHQ 17 YHQ O5 O5 O 0 1 N N N -9.851 5.651 -23.117 3.997 0.949 -1.765 O5 YHQ 18 YHQ N1 N1 N 0 1 Y N N -16.478 6.150 -25.809 -2.561 0.222 -0.047 N1 YHQ 19 YHQ O6 O6 O 0 1 N N N -11.853 4.343 -22.501 4.863 0.978 0.717 O6 YHQ 20 YHQ N4 N2 N 0 1 Y N N -20.462 6.612 -25.937 -6.431 1.049 0.806 N4 YHQ 21 YHQ O7 O7 O 0 1 N N N -10.317 3.418 -24.308 4.994 -1.109 -0.697 O7 YHQ 22 YHQ N2 N3 N 0 1 Y N N -17.595 4.924 -24.296 -3.427 1.911 -1.124 N2 YHQ 23 YHQ N3 N4 N 0 1 Y N N -18.353 7.260 -26.901 -4.622 -0.319 1.250 N3 YHQ 24 YHQ N5 N5 N 0 1 N N N -20.667 5.093 -24.204 -6.333 2.835 -0.732 N5 YHQ 25 YHQ P1 P1 P 0 1 N N N -10.816 4.666 -23.679 4.159 0.081 -0.419 P1 YHQ 26 YHQ H1 H1 H 0 1 N N N -14.710 8.066 -24.331 -0.036 -2.631 -1.654 H1 YHQ 27 YHQ H2 H2 H 0 1 N N N -16.088 8.716 -26.182 -2.202 -1.878 -1.376 H2 YHQ 28 YHQ H3 H3 H 0 1 N N N -15.536 6.484 -27.654 -1.705 -0.973 1.466 H3 YHQ 29 YHQ H4 H4 H 0 1 N N N -15.495 4.819 -24.417 -1.413 1.376 -1.484 H4 YHQ 30 YHQ H5 H5 H 0 1 N N N -12.797 9.363 -24.453 -0.664 -4.562 -0.375 H5 YHQ 31 YHQ H6 H6 H 0 1 N N N -20.189 7.936 -27.476 -6.472 -0.528 2.145 H6 YHQ 32 YHQ H7 H7 H 0 1 N N N -12.537 7.336 -26.343 0.786 -1.834 1.145 H7 YHQ 33 YHQ H8 H8 H 0 1 N N N -11.916 7.253 -23.945 2.392 -2.235 -0.782 H8 YHQ 34 YHQ H9 H9 H 0 1 N N N -13.275 6.116 -23.651 1.648 -0.852 -1.619 H9 YHQ 35 YHQ H10 H10 H 0 1 N N N -12.167 2.258 -22.421 6.634 1.127 -0.337 H10 YHQ 36 YHQ H11 H11 H 0 1 N N N -12.989 3.283 -20.361 5.770 3.325 1.597 H11 YHQ 37 YHQ H12 H12 H 0 1 N N N -14.179 4.245 -21.300 7.222 3.359 0.568 H12 YHQ 38 YHQ H13 H13 H 0 1 N N N -14.323 2.456 -21.234 5.605 3.377 -0.175 H13 YHQ 39 YHQ H14 H14 H 0 1 N N N -14.229 2.345 -23.758 6.608 1.253 2.713 H14 YHQ 40 YHQ H15 H15 H 0 1 N N N -14.116 4.137 -23.805 7.041 -0.171 1.736 H15 YHQ 41 YHQ H16 H16 H 0 1 N N N -12.854 3.137 -24.601 8.061 1.287 1.684 H16 YHQ 42 YHQ H17 H17 H 0 1 N N N -14.432 9.631 -27.560 -2.591 -3.896 -0.117 H17 YHQ 43 YHQ H18 H18 H 0 1 N N N -8.965 5.333 -23.241 3.460 1.746 -1.657 H18 YHQ 44 YHQ H19 H19 H 0 1 N N N -21.623 5.334 -24.370 -5.821 3.353 -1.372 H19 YHQ 45 YHQ H20 H20 H 0 1 N N N -20.542 4.111 -24.345 -7.258 3.064 -0.552 H20 YHQ 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YHQ O3 C2 SING N N 1 YHQ N3 C7 DOUB Y N 2 YHQ N3 C6 SING Y N 3 YHQ C7 N4 SING Y N 4 YHQ C3 C2 SING N N 5 YHQ C3 O2 SING N N 6 YHQ C3 N1 SING N N 7 YHQ C2 C1 SING N N 8 YHQ O2 C9 SING N N 9 YHQ C6 N1 SING Y N 10 YHQ C6 C5 DOUB Y N 11 YHQ N4 C8 DOUB Y N 12 YHQ N1 C4 SING Y N 13 YHQ C9 C1 SING N N 14 YHQ C9 C10 SING N N 15 YHQ C1 O1 SING N N 16 YHQ C5 C8 SING Y N 17 YHQ C5 N2 SING Y N 18 YHQ C8 N5 SING N N 19 YHQ O4 C10 SING N N 20 YHQ O4 P1 SING N N 21 YHQ C4 N2 DOUB Y N 22 YHQ O7 P1 DOUB N N 23 YHQ C13 C11 SING N N 24 YHQ P1 O5 SING N N 25 YHQ P1 O6 SING N N 26 YHQ O6 C11 SING N N 27 YHQ C11 C12 SING N N 28 YHQ C1 H1 SING N N 29 YHQ C2 H2 SING N N 30 YHQ C3 H3 SING N N 31 YHQ C4 H4 SING N N 32 YHQ O1 H5 SING N N 33 YHQ C7 H6 SING N N 34 YHQ C9 H7 SING N N 35 YHQ C10 H8 SING N N 36 YHQ C10 H9 SING N N 37 YHQ C11 H10 SING N N 38 YHQ C12 H11 SING N N 39 YHQ C12 H12 SING N N 40 YHQ C12 H13 SING N N 41 YHQ C13 H14 SING N N 42 YHQ C13 H15 SING N N 43 YHQ C13 H16 SING N N 44 YHQ O3 H17 SING N N 45 YHQ O5 H18 SING N N 46 YHQ N5 H19 SING N N 47 YHQ N5 H20 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YHQ SMILES ACDLabs 12.01 "CC(C)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" YHQ InChI InChI 1.06 "InChI=1S/C13H20N5O7P/c1-6(2)25-26(21,22)23-3-7-9(19)10(20)13(24-7)18-5-17-8-11(14)15-4-16-12(8)18/h4-7,9-10,13,19-20H,3H2,1-2H3,(H,21,22)(H2,14,15,16)/t7-,9-,10-,13-/m1/s1" YHQ InChIKey InChI 1.06 UCVFYZHKFZWYCU-QYVSTXNMSA-N YHQ SMILES_CANONICAL CACTVS 3.385 "CC(C)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" YHQ SMILES CACTVS 3.385 "CC(C)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" YHQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" YHQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YHQ "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-{(R)-hydroxy[(propan-2-yl)oxy]phosphoryl}adenosine" YHQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl propan-2-yl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YHQ "Create component" 2023-02-03 RCSB YHQ "Initial release" 2023-02-15 RCSB #