data_YIO # _chem_comp.id YIO _chem_comp.name 1-thio-beta-D-galactopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL; 1-thio-beta-D-galactose; 1-thio-D-galactose; 1-thio-galactose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-05-16 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 196.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YIO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2YIO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 YIO "(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL" PDB ? 2 YIO 1-thio-beta-D-galactose PDB ? 3 YIO 1-thio-D-galactose PDB ? 4 YIO 1-thio-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YIO C1 C1 C 0 1 N N S 6.620 10.728 43.681 -0.729 0.941 0.375 C1 YIO 1 YIO C2 C2 C 0 1 N N R 8.108 10.371 43.267 -1.388 -0.378 -0.038 C2 YIO 2 YIO C3 C3 C 0 1 N N S 9.056 10.810 44.444 -0.587 -1.545 0.548 C3 YIO 3 YIO C4 C4 C 0 1 N N R 8.832 12.243 44.822 0.865 -1.445 0.069 C4 YIO 4 YIO C5 C5 C 0 1 N N R 7.338 12.535 44.953 1.436 -0.085 0.477 C5 YIO 5 YIO C6 C6 C 0 1 N N N 7.040 13.964 45.343 2.867 0.047 -0.050 C6 YIO 6 YIO O2 O2 O 0 1 N N N 8.303 8.961 42.944 -2.726 -0.420 0.461 O2 YIO 7 YIO O3 O3 O 0 1 N N N 10.462 10.636 44.214 -1.152 -2.781 0.107 O3 YIO 8 YIO O4 O4 O 0 1 N N N 9.419 13.058 43.842 0.908 -1.573 -1.354 O4 YIO 9 YIO O5 O5 O 0 1 N N N 6.675 12.190 43.753 0.627 0.956 -0.075 O5 YIO 10 YIO O6 O6 O 0 1 N N N 7.720 14.209 46.566 3.441 1.265 0.429 O6 YIO 11 YIO S1 S1 S 0 1 N N N 5.025 10.303 42.798 -1.629 2.327 -0.373 S1 YIO 12 YIO H1 H1 H 0 1 N N N 6.465 10.048 44.532 -0.753 1.035 1.461 H1 YIO 13 YIO H2 H2 H 0 1 N N N 8.346 10.914 42.341 -1.400 -0.454 -1.125 H2 YIO 14 YIO H3 H3 H 0 1 N N N 8.774 10.123 45.255 -0.615 -1.497 1.637 H3 YIO 15 YIO HO2 HA H 0 1 N Y N 8.345 8.855 42.001 -3.290 0.295 0.134 HO2 YIO 16 YIO H4 H4 H 0 1 N N N 9.295 12.451 45.798 1.454 -2.240 0.525 H4 YIO 17 YIO HO3 HB H 0 1 N Y N 10.628 10.598 43.279 -2.073 -2.908 0.370 HO3 YIO 18 YIO H5 H5 H 0 1 N N N 6.958 11.913 45.777 1.441 -0.004 1.564 H5 YIO 19 YIO HO4 HC H 0 1 N Y N 9.552 13.931 44.193 0.556 -2.411 -1.684 HO4 YIO 20 YIO H61 H61C H 0 1 N N N 7.394 14.655 44.564 3.462 -0.797 0.299 H61 YIO 21 YIO H62 H62C H 0 1 N N N 5.957 14.122 45.458 2.853 0.056 -1.140 H62 YIO 22 YIO HO6 HO6 H 0 1 N Y N 8.654 14.264 46.404 4.349 1.414 0.133 HO6 YIO 23 YIO HS1 HS1 H 0 1 N N N 4.062 10.204 43.665 -0.951 3.401 0.068 HS1 YIO 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YIO C1 C2 SING N N 1 YIO C1 O5 SING N N 2 YIO C1 S1 SING N N 3 YIO C2 C3 SING N N 4 YIO C2 O2 SING N N 5 YIO C3 C4 SING N N 6 YIO C3 O3 SING N N 7 YIO C4 C5 SING N N 8 YIO C4 O4 SING N N 9 YIO C5 C6 SING N N 10 YIO C5 O5 SING N N 11 YIO C6 O6 SING N N 12 YIO C1 H1 SING N N 13 YIO C2 H2 SING N N 14 YIO C3 H3 SING N N 15 YIO O2 HO2 SING N N 16 YIO C4 H4 SING N N 17 YIO O3 HO3 SING N N 18 YIO C5 H5 SING N N 19 YIO O4 HO4 SING N N 20 YIO C6 H61 SING N N 21 YIO C6 H62 SING N N 22 YIO S1 HS1 SING N N 23 YIO O6 HO6 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YIO SMILES_CANONICAL CACTVS 3.352 "OC[C@H]1O[C@@H](S)[C@H](O)[C@@H](O)[C@H]1O" YIO SMILES CACTVS 3.352 "OC[CH]1O[CH](S)[CH](O)[CH](O)[CH]1O" YIO SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S)O)O)O)O" YIO SMILES "OpenEye OEToolkits" 1.6.1 "C(C1C(C(C(C(O1)S)O)O)O)O" YIO InChI InChI 1.03 "InChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3+,4+,5-,6+/m1/s1" YIO InChIKey InChI 1.03 JUSMHIGDXPKSID-PHYPRBDBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YIO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol" YIO "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Galp1SH # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support YIO "CARBOHYDRATE ISOMER" D PDB ? YIO "CARBOHYDRATE RING" pyranose PDB ? YIO "CARBOHYDRATE ANOMER" beta PDB ? YIO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YIO "Create component" 2011-05-16 EBI YIO "Other modification" 2011-05-16 EBI YIO "Modify descriptor" 2011-06-04 RCSB YIO "Other modification" 2020-07-03 RCSB YIO "Modify name" 2020-07-17 RCSB YIO "Modify synonyms" 2020-07-17 RCSB YIO "Modify internal type" 2020-07-17 RCSB YIO "Modify linking type" 2020-07-17 RCSB YIO "Modify atom id" 2020-07-17 RCSB YIO "Modify component atom id" 2020-07-17 RCSB YIO "Modify leaving atom flag" 2020-07-17 RCSB ##