data_YJ6 # _chem_comp.id YJ6 _chem_comp.name "4-[(3,4-dichlorophenyl)methyl]-~{N}-(4-fluorophenyl)-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C41 H41 Cl2 F2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "-(3,4-Dichlorobenzyl)-4-(((5-((4-fluorophenethyl)carbamoyl)furan-2-yl)methyl)(4-fluorophenyl)carbamoyl)-1-(3-phenylpropyl)piperazin-1-ium" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 746.692 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YJ6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8PF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YJ6 F1 F1 F 0 1 N N N N N N 10.642 10.149 87.744 ? ? ? F1 YJ6 1 YJ6 C1 C1 C 0 1 Y N N N N N 10.237 9.555 86.591 ? ? ? C1 YJ6 2 YJ6 C2 C2 C 0 1 Y N N N N N 8.899 9.498 86.321 ? ? ? C2 YJ6 3 YJ6 C3 C3 C 0 1 Y N N N N N 8.506 8.888 85.133 ? ? ? C3 YJ6 4 YJ6 C4 C4 C 0 1 Y N N N N N 9.430 8.348 84.235 ? ? ? C4 YJ6 5 YJ6 C5 C5 C 0 1 N N N N N N 8.991 7.633 82.968 ? ? ? C5 YJ6 6 YJ6 C6 C6 C 0 1 N N N N N N 9.035 8.455 81.686 ? ? ? C6 YJ6 7 YJ6 N1 N1 N 0 1 N N N N N N 7.874 9.336 81.583 ? ? ? N1 YJ6 8 YJ6 C7 C7 C 0 1 N N N N N N 7.803 10.478 82.280 ? ? ? C7 YJ6 9 YJ6 C8 C8 C 0 1 Y N N N N N 6.492 11.123 82.452 ? ? ? C8 YJ6 10 YJ6 C9 C9 C 0 1 Y N N N N N 6.139 12.406 82.659 ? ? ? C9 YJ6 11 YJ6 C10 C10 C 0 1 Y N N N N N 4.729 12.437 82.780 ? ? ? C10 YJ6 12 YJ6 C11 C11 C 0 1 Y N N N N N 4.287 11.177 82.637 ? ? ? C11 YJ6 13 YJ6 C12 C12 C 0 1 N N N N N N 2.951 10.520 82.702 ? ? ? C12 YJ6 14 YJ6 N2 N2 N 0 1 N N N N N N 1.860 11.085 81.898 ? ? ? N2 YJ6 15 YJ6 C13 C13 C 0 1 Y N N N N N 1.646 12.508 81.914 ? ? ? C13 YJ6 16 YJ6 C14 C14 C 0 1 Y N N N N N 1.911 13.283 80.787 ? ? ? C14 YJ6 17 YJ6 C15 C15 C 0 1 Y N N N N N 1.693 14.653 80.793 ? ? ? C15 YJ6 18 YJ6 C16 C16 C 0 1 Y N N N N N 1.198 15.234 81.929 ? ? ? C16 YJ6 19 YJ6 F2 F2 F 0 1 N N N N N N 0.982 16.580 81.933 ? ? ? F2 YJ6 20 YJ6 C17 C17 C 0 1 Y N N N N N 0.910 14.514 83.058 ? ? ? C17 YJ6 21 YJ6 C18 C18 C 0 1 Y N N N N N 1.130 13.143 83.044 ? ? ? C18 YJ6 22 YJ6 C19 C19 C 0 1 N N N N N N 0.958 10.273 81.211 ? ? ? C19 YJ6 23 YJ6 N3 N3 N 0 1 N N N N N N 0.399 9.207 81.828 ? ? ? N3 YJ6 24 YJ6 C20 C20 C 0 1 N N N N N N 1.120 7.989 82.186 ? ? ? C20 YJ6 25 YJ6 C21 C21 C 0 1 N N N N N N 0.158 6.869 82.510 ? ? ? C21 YJ6 26 YJ6 N4 N4 N 0 1 N N N N N N -0.653 7.176 83.760 ? ? ? N4 YJ6 27 YJ6 C22 C22 C 0 1 N N N N N N -1.845 6.216 83.750 ? ? ? C22 YJ6 28 YJ6 C23 C23 C 0 1 N N N N N N -3.149 6.703 84.391 ? ? ? C23 YJ6 29 YJ6 C24 C24 C 0 1 N N N N N N -3.145 6.723 85.934 ? ? ? C24 YJ6 30 YJ6 C25 C25 C 0 1 Y N N N N N -3.959 7.821 86.590 ? ? ? C25 YJ6 31 YJ6 C26 C26 C 0 1 Y N N N N N -4.921 8.541 85.882 ? ? ? C26 YJ6 32 YJ6 C27 C27 C 0 1 Y N N N N N -5.655 9.542 86.502 ? ? ? C27 YJ6 33 YJ6 C28 C28 C 0 1 Y N N N N N -5.444 9.836 87.834 ? ? ? C28 YJ6 34 YJ6 C29 C29 C 0 1 Y N N N N N -4.500 9.132 88.550 ? ? ? C29 YJ6 35 YJ6 C30 C30 C 0 1 Y N N N N N -3.763 8.131 87.934 ? ? ? C30 YJ6 36 YJ6 C31 C31 C 0 1 N N N N N N 0.154 6.927 85.051 ? ? ? C31 YJ6 37 YJ6 C32 C32 C 0 1 Y N N N N N 1.657 6.992 84.940 ? ? ? C32 YJ6 38 YJ6 C33 C33 C 0 1 Y N N N N N 2.344 6.022 84.226 ? ? ? C33 YJ6 39 YJ6 C34 C34 C 0 1 Y N N N N N 3.714 6.083 84.086 ? ? ? C34 YJ6 40 YJ6 C35 C35 C 0 1 Y N N N N N 4.423 7.103 84.686 ? ? ? C35 YJ6 41 YJ6 CL1 CL1 CL 0 0 N N N N N N 6.142 7.121 84.499 ? ? ? CL1 YJ6 42 YJ6 C36 C36 C 0 1 Y N N N N N 3.756 8.076 85.417 ? ? ? C36 YJ6 43 YJ6 CL2 CL2 CL 0 0 N N N N N N 4.622 9.369 86.186 ? ? ? CL2 YJ6 44 YJ6 C37 C37 C 0 1 Y N N N N N 2.377 8.019 85.544 ? ? ? C37 YJ6 45 YJ6 C38 C38 C 0 1 N N N N N N -1.071 8.642 83.683 ? ? ? C38 YJ6 46 YJ6 C39 C39 C 0 1 N N N N N N -0.992 9.187 82.274 ? ? ? C39 YJ6 47 YJ6 O1 O1 O 0 1 N N N N N N 0.642 10.539 80.051 ? ? ? O1 YJ6 48 YJ6 O2 O2 O 0 1 Y N N N N N 5.363 10.346 82.453 ? ? ? O2 YJ6 49 YJ6 O3 O3 O 0 1 N N N N N N 8.806 10.953 82.811 ? ? ? O3 YJ6 50 YJ6 C40 C40 C 0 1 Y N N N N N 10.777 8.423 84.577 ? ? ? C40 YJ6 51 YJ6 C41 C41 C 0 1 Y N N N N N 11.192 9.048 85.747 ? ? ? C41 YJ6 52 YJ6 H1 H1 H 0 1 N N N N N N 8.172 9.911 87.005 ? ? ? H1 YJ6 53 YJ6 H2 H2 H 0 1 N N N N N N 7.453 8.830 84.898 ? ? ? H2 YJ6 54 YJ6 H3 H3 H 0 1 N N N N N N 7.955 7.294 83.115 ? ? ? H3 YJ6 55 YJ6 H4 H4 H 0 1 N N N N N N 9.646 6.760 82.830 ? ? ? H4 YJ6 56 YJ6 H5 H5 H 0 1 N N N N N N 9.046 7.773 80.823 ? ? ? H5 YJ6 57 YJ6 H6 H6 H 0 1 N N N N N N 9.950 9.065 81.682 ? ? ? H6 YJ6 58 YJ6 H7 H7 H 0 1 N N N N N N 7.118 9.082 80.980 ? ? ? H7 YJ6 59 YJ6 H8 H8 H 0 1 N N N N N N 6.807 13.253 82.721 ? ? ? H8 YJ6 60 YJ6 H9 H9 H 0 1 N N N N N N 4.121 13.312 82.955 ? ? ? H9 YJ6 61 YJ6 H10 H10 H 0 1 N N N N N N 2.627 10.543 83.753 ? ? ? H10 YJ6 62 YJ6 H11 H11 H 0 1 N N N N N N 3.085 9.476 82.382 ? ? ? H11 YJ6 63 YJ6 H12 H12 H 0 1 N N N N N N 2.292 12.810 79.894 ? ? ? H12 YJ6 64 YJ6 H13 H13 H 0 1 N N N N N N 1.910 15.249 79.919 ? ? ? H13 YJ6 65 YJ6 H14 H14 H 0 1 N N N N N N 0.521 15.002 83.939 ? ? ? H14 YJ6 66 YJ6 H15 H15 H 0 1 N N N N N N 0.898 12.559 83.922 ? ? ? H15 YJ6 67 YJ6 H16 H16 H 0 1 N N N N N N 1.755 7.685 81.341 ? ? ? H16 YJ6 68 YJ6 H17 H17 H 0 1 N N N N N N 1.750 8.189 83.065 ? ? ? H17 YJ6 69 YJ6 H18 H18 H 0 1 N N N N N N -0.530 6.732 81.662 ? ? ? H18 YJ6 70 YJ6 H19 H19 H 0 1 N N N N N N 0.729 5.943 82.673 ? ? ? H19 YJ6 71 YJ6 H20 H20 H 0 1 N N N N N N -2.064 5.973 82.700 ? ? ? H20 YJ6 72 YJ6 H21 H21 H 0 1 N N N N N N -1.538 5.303 84.281 ? ? ? H21 YJ6 73 YJ6 H22 H22 H 0 1 N N N N N N -3.343 7.726 84.036 ? ? ? H22 YJ6 74 YJ6 H23 H23 H 0 1 N N N N N N -3.961 6.040 84.060 ? ? ? H23 YJ6 75 YJ6 H24 H24 H 0 1 N N N N N N -3.540 5.758 86.283 ? ? ? H24 YJ6 76 YJ6 H25 H25 H 0 1 N N N N N N -2.102 6.834 86.266 ? ? ? H25 YJ6 77 YJ6 H26 H26 H 0 1 N N N N N N -5.096 8.317 84.840 ? ? ? H26 YJ6 78 YJ6 H27 H27 H 0 1 N N N N N N -6.394 10.093 85.940 ? ? ? H27 YJ6 79 YJ6 H28 H28 H 0 1 N N N N N N -6.017 10.616 88.314 ? ? ? H28 YJ6 80 YJ6 H29 H29 H 0 1 N N N N N N -4.334 9.360 89.592 ? ? ? H29 YJ6 81 YJ6 H30 H30 H 0 1 N N N N N N -3.027 7.584 88.505 ? ? ? H30 YJ6 82 YJ6 H31 H31 H 0 1 N N N N N N -0.158 7.681 85.788 ? ? ? H31 YJ6 83 YJ6 H32 H32 H 0 1 N N N N N N -0.109 5.924 85.419 ? ? ? H32 YJ6 84 YJ6 H33 H33 H 0 1 N N N N N N 1.798 5.207 83.773 ? ? ? H33 YJ6 85 YJ6 H34 H34 H 0 1 N N N N N N 4.232 5.333 83.507 ? ? ? H34 YJ6 86 YJ6 H35 H35 H 0 1 N N N N N N 1.858 8.775 86.115 ? ? ? H35 YJ6 87 YJ6 H36 H36 H 0 1 N N N N N N -0.406 9.234 84.329 ? ? ? H36 YJ6 88 YJ6 H37 H37 H 0 1 N N N N N N -2.107 8.734 84.040 ? ? ? H37 YJ6 89 YJ6 H38 H38 H 0 1 N N N N N N -1.396 10.210 82.255 ? ? ? H38 YJ6 90 YJ6 H39 H39 H 0 1 N N N N N N -1.582 8.547 81.601 ? ? ? H39 YJ6 91 YJ6 H40 H40 H 0 1 N N N N N N 11.515 7.987 83.920 ? ? ? H40 YJ6 92 YJ6 H41 H41 H 0 1 N N N N N N 12.242 9.132 85.986 ? ? ? H41 YJ6 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YJ6 O1 C19 DOUB N N 1 YJ6 C14 C15 DOUB Y N 2 YJ6 C14 C13 SING Y N 3 YJ6 C15 C16 SING Y N 4 YJ6 C19 N3 SING N N 5 YJ6 C19 N2 SING N N 6 YJ6 N1 C6 SING N N 7 YJ6 N1 C7 SING N N 8 YJ6 C6 C5 SING N N 9 YJ6 N3 C20 SING N N 10 YJ6 N3 C39 SING N N 11 YJ6 N2 C13 SING N N 12 YJ6 N2 C12 SING N N 13 YJ6 C13 C18 DOUB Y N 14 YJ6 C16 F2 SING N N 15 YJ6 C16 C17 DOUB Y N 16 YJ6 C20 C21 SING N N 17 YJ6 C39 C38 SING N N 18 YJ6 C7 C8 SING N N 19 YJ6 C7 O3 DOUB N N 20 YJ6 C8 O2 SING Y N 21 YJ6 C8 C9 DOUB Y N 22 YJ6 O2 C11 SING Y N 23 YJ6 C21 N4 SING N N 24 YJ6 C11 C12 SING N N 25 YJ6 C11 C10 DOUB Y N 26 YJ6 C9 C10 SING Y N 27 YJ6 C5 C4 SING N N 28 YJ6 C18 C17 SING Y N 29 YJ6 C38 N4 SING N N 30 YJ6 C22 N4 SING N N 31 YJ6 C22 C23 SING N N 32 YJ6 N4 C31 SING N N 33 YJ6 C34 C33 DOUB Y N 34 YJ6 C34 C35 SING Y N 35 YJ6 C33 C32 SING Y N 36 YJ6 C4 C40 DOUB Y N 37 YJ6 C4 C3 SING Y N 38 YJ6 C23 C24 SING N N 39 YJ6 CL1 C35 SING N N 40 YJ6 C40 C41 SING Y N 41 YJ6 C35 C36 DOUB Y N 42 YJ6 C32 C31 SING N N 43 YJ6 C32 C37 DOUB Y N 44 YJ6 C3 C2 DOUB Y N 45 YJ6 C36 C37 SING Y N 46 YJ6 C36 CL2 SING N N 47 YJ6 C41 C1 DOUB Y N 48 YJ6 C26 C27 DOUB Y N 49 YJ6 C26 C25 SING Y N 50 YJ6 C24 C25 SING N N 51 YJ6 C2 C1 SING Y N 52 YJ6 C27 C28 SING Y N 53 YJ6 C25 C30 DOUB Y N 54 YJ6 C1 F1 SING N N 55 YJ6 C28 C29 DOUB Y N 56 YJ6 C30 C29 SING Y N 57 YJ6 C2 H1 SING N N 58 YJ6 C3 H2 SING N N 59 YJ6 C5 H3 SING N N 60 YJ6 C5 H4 SING N N 61 YJ6 C6 H5 SING N N 62 YJ6 C6 H6 SING N N 63 YJ6 N1 H7 SING N N 64 YJ6 C9 H8 SING N N 65 YJ6 C10 H9 SING N N 66 YJ6 C12 H10 SING N N 67 YJ6 C12 H11 SING N N 68 YJ6 C14 H12 SING N N 69 YJ6 C15 H13 SING N N 70 YJ6 C17 H14 SING N N 71 YJ6 C18 H15 SING N N 72 YJ6 C20 H16 SING N N 73 YJ6 C20 H17 SING N N 74 YJ6 C21 H18 SING N N 75 YJ6 C21 H19 SING N N 76 YJ6 C22 H20 SING N N 77 YJ6 C22 H21 SING N N 78 YJ6 C23 H22 SING N N 79 YJ6 C23 H23 SING N N 80 YJ6 C24 H24 SING N N 81 YJ6 C24 H25 SING N N 82 YJ6 C26 H26 SING N N 83 YJ6 C27 H27 SING N N 84 YJ6 C28 H28 SING N N 85 YJ6 C29 H29 SING N N 86 YJ6 C30 H30 SING N N 87 YJ6 C31 H31 SING N N 88 YJ6 C31 H32 SING N N 89 YJ6 C33 H33 SING N N 90 YJ6 C34 H34 SING N N 91 YJ6 C37 H35 SING N N 92 YJ6 C38 H36 SING N N 93 YJ6 C38 H37 SING N N 94 YJ6 C39 H38 SING N N 95 YJ6 C39 H39 SING N N 96 YJ6 C40 H40 SING N N 97 YJ6 C41 H41 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YJ6 InChI InChI 1.06 "InChI=1S/C41H41Cl2F2N4O3/c42-37-18-10-32(27-38(37)43)29-49(24-4-7-30-5-2-1-3-6-30)25-22-47(23-26-49)41(51)48(35-15-13-34(45)14-16-35)28-36-17-19-39(52-36)40(50)46-21-20-31-8-11-33(44)12-9-31/h1-3,5-6,8-19,27H,4,7,20-26,28-29H2,(H,46,50)" YJ6 InChIKey InChI 1.06 YQJHJAGZYIUEMW-UHFFFAOYSA-N YJ6 SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(CCNC(=O)c2oc(CN(C(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)c6ccc(F)cc6)cc2)cc1" YJ6 SMILES CACTVS 3.385 "Fc1ccc(CCNC(=O)c2oc(CN(C(=O)N3CC[N](CCCc4ccccc4)(CC3)Cc5ccc(Cl)c(Cl)c5)c6ccc(F)cc6)cc2)cc1" YJ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)N(Cc3ccc(o3)C(=O)NCCc4ccc(cc4)F)c5ccc(cc5)F)Cc6ccc(c(c6)Cl)Cl" YJ6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC[N]2(CCN(CC2)C(=O)N(Cc3ccc(o3)C(=O)NCCc4ccc(cc4)F)c5ccc(cc5)F)Cc6ccc(c(c6)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id YJ6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(3,4-dichlorophenyl)methyl]-~{N}-(4-fluorophenyl)-~{N}-[[5-[2-(4-fluorophenyl)ethylcarbamoyl]furan-2-yl]methyl]-4-(3-phenylpropyl)-1,4$l^{4}-diazinane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YJ6 "Create component" 2023-06-19 PDBE YJ6 "Modify name" 2023-07-11 PDBE YJ6 "Initial release" 2024-04-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YJ6 _pdbx_chem_comp_synonyms.name "-(3,4-Dichlorobenzyl)-4-(((5-((4-fluorophenethyl)carbamoyl)furan-2-yl)methyl)(4-fluorophenyl)carbamoyl)-1-(3-phenylpropyl)piperazin-1-ium" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #