data_YLA # _chem_comp.id YLA _chem_comp.name " (S)-2-amino-6-(((prop-2-yn-1-yloxy)carbonyl)amino)hexanoic (((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)anhydride" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N7 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-28 _chem_comp.pdbx_modified_date 2014-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.451 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YLA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YLA C C C 0 1 N N N 43.028 133.587 -10.897 1.963 -2.323 -1.400 C YLA 1 YLA N N N 0 1 N N N 42.575 134.893 -8.913 3.724 -2.280 -3.074 N YLA 2 YLA O O O 0 1 N N N 43.422 134.510 -11.610 1.882 -3.510 -1.609 O YLA 3 YLA N1 N1 N 0 1 Y N N 35.860 125.728 -11.687 -8.806 3.522 -0.610 N1 YLA 4 YLA O1 O1 O 0 1 N N N 44.731 139.875 -7.763 10.448 1.868 0.933 O1 YLA 5 YLA C2 C2 C 0 1 Y N N 36.002 125.757 -10.334 -8.436 3.283 0.635 C2 YLA 6 YLA C3 C3 C 0 1 N N N 45.170 140.855 -8.699 11.586 2.706 0.601 C3 YLA 7 YLA N3 N3 N 0 1 Y N N 36.980 126.462 -9.724 -7.444 2.470 0.934 N3 YLA 8 YLA C4 C4 C 0 1 Y N N 37.840 127.199 -10.491 -6.767 1.847 -0.025 C4 YLA 9 YLA C5 C5 C 0 1 Y N N 37.745 127.195 -11.969 -7.122 2.068 -1.366 C5 YLA 10 YLA C6 C6 C 0 1 Y N N 36.662 126.385 -12.553 -8.187 2.945 -1.635 C6 YLA 11 YLA N6 N6 N 0 1 N N N 36.503 126.356 -13.893 -8.583 3.201 -2.936 N6 YLA 12 YLA C7 C7 C 0 1 N N N 44.384 142.060 -8.540 12.482 2.802 1.765 C7 YLA 13 YLA N7 N7 N 0 1 Y N N 38.715 127.982 -12.464 -6.285 1.324 -2.129 N7 YLA 14 YLA C8 C8 C 0 1 Y N N 39.395 128.456 -11.392 -5.459 0.677 -1.360 C8 YLA 15 YLA C9 C9 C 0 1 N N N 43.713 143.116 -8.370 13.196 2.878 2.693 C9 YLA 16 YLA N9 N9 N 0 1 Y N N 38.875 127.976 -10.229 -5.715 0.966 -0.052 N9 YLA 17 YLA CA CA C 0 1 N N R 43.175 133.675 -9.396 3.121 -1.537 -1.960 CA YLA 18 YLA CB CB C 0 1 N N N 44.634 133.490 -8.949 4.167 -1.320 -0.865 CB YLA 19 YLA "C1'" "C1'" C 0 1 N N R 39.329 128.267 -8.855 -5.000 0.434 1.110 "C1'" YLA 20 YLA "C2'" "C2'" C 0 1 N N R 40.365 127.296 -8.358 -5.734 -0.804 1.684 "C2'" YLA 21 YLA "O2'" "O2'" O 0 1 N N N 40.290 127.185 -6.932 -6.747 -0.411 2.612 "O2'" YLA 22 YLA "C3'" "C3'" C 0 1 N N S 41.678 127.954 -8.745 -4.588 -1.556 2.403 "C3'" YLA 23 YLA "O3'" "O3'" O 0 1 N N N 42.777 127.504 -7.984 -4.594 -1.259 3.800 "O3'" YLA 24 YLA "C4'" "C4'" C 0 1 N N R 41.344 129.386 -8.448 -3.306 -1.014 1.741 "C4'" YLA 25 YLA "O4'" "O4'" O 0 1 N N N 39.969 129.534 -8.863 -3.712 -0.089 0.718 "O4'" YLA 26 YLA "C5'" "C5'" C 0 1 N N N 42.219 130.396 -9.156 -2.516 -2.166 1.117 "C5'" YLA 27 YLA "O5'" "O5'" O 0 1 N N N 42.373 129.985 -10.497 -1.275 -1.671 0.609 "O5'" YLA 28 YLA OAD OAD O 0 1 N N N 45.275 138.106 -9.160 9.670 2.196 -1.119 OAD YLA 29 YLA OAF OAF O 0 1 N N N 42.756 130.373 -12.893 -0.828 -3.326 -1.244 OAF YLA 30 YLA OAI OAI O 0 1 N N N 44.513 131.013 -11.075 0.388 -3.680 0.939 OAI YLA 31 YLA CAM CAM C 0 1 N N N 45.141 135.546 -7.614 6.329 -0.201 -0.303 CAM YLA 32 YLA CAN CAN C 0 1 N N N 45.468 134.761 -8.871 5.282 -0.418 -1.398 CAN YLA 33 YLA CAO CAO C 0 1 N N N 46.248 136.502 -7.237 7.444 0.702 -0.835 CAO YLA 34 YLA NAW NAW N 0 1 N N N 45.708 137.820 -6.995 8.446 0.910 0.214 NAW YLA 35 YLA OAY OAY O 0 1 N N N 42.384 132.398 -11.481 1.019 -1.703 -0.675 OAY YLA 36 YLA CBA CBA C 0 1 N N N 45.253 138.538 -8.011 9.527 1.677 -0.030 CBA YLA 37 YLA PBN PBN P 0 1 N N N 43.089 130.943 -11.549 -0.188 -2.611 -0.117 PBN YLA 38 YLA HN HN H 0 1 N N N 42.676 134.944 -7.919 4.062 -3.180 -2.767 HN YLA 39 YLA HNA HNA H 0 1 N N N 43.029 135.678 -9.335 3.072 -2.381 -3.838 HNA YLA 40 YLA H2 H2 H 0 1 N N N 35.308 125.196 -9.726 -8.965 3.774 1.438 H2 YLA 41 YLA H3 H3 H 0 1 N N N 46.231 141.083 -8.521 12.126 2.268 -0.239 H3 YLA 42 YLA H3A H3A H 0 1 N N N 45.045 140.468 -9.721 11.236 3.701 0.328 H3A YLA 43 YLA HN6 HN6 H 0 1 N N N 35.716 125.784 -14.123 -9.320 3.807 -3.108 HN6 YLA 44 YLA HN6A HN6A H 0 0 N N N 36.350 127.285 -14.231 -8.123 2.773 -3.676 HN6A YLA 45 YLA H8 H8 H 0 1 N N N 40.239 129.127 -11.452 -4.685 0.008 -1.706 H8 YLA 46 YLA H9 H9 H 0 1 N N N 43.150 144.003 -8.227 13.835 2.946 3.524 H9 YLA 47 YLA HA HA H 0 1 N N N 42.609 132.833 -8.971 2.764 -0.571 -2.319 HA YLA 48 YLA HB HB H 0 1 N N N 44.625 133.030 -7.950 3.698 -0.848 -0.003 HB YLA 49 YLA HBA HBA H 0 1 N N N 45.122 132.809 -9.662 4.588 -2.281 -0.569 HBA YLA 50 YLA "H1'" "H1'" H 0 1 N N N 38.469 128.270 -8.169 -4.887 1.203 1.875 "H1'" YLA 51 YLA "H2'" "H2'" H 0 1 N N N 40.258 126.320 -8.854 -6.157 -1.411 0.883 "H2'" YLA 52 YLA "HO2'" "HO2'" H 0 0 N N N 40.947 126.570 -6.627 -7.235 -1.151 2.998 "HO2'" YLA 53 YLA "H3'" "H3'" H 0 1 N N N 41.856 127.824 -9.823 -4.677 -2.631 2.242 "H3'" YLA 54 YLA "HO3'" "HO3'" H 0 0 N N N 43.565 127.950 -8.271 -5.404 -1.526 4.256 "HO3'" YLA 55 YLA "H4'" "H4'" H 0 1 N N N 41.422 129.551 -7.363 -2.695 -0.501 2.483 "H4'" YLA 56 YLA "H5'" "H5'" H 0 1 N N N 41.744 131.388 -9.123 -2.321 -2.925 1.874 "H5'" YLA 57 YLA "H5'A" "H5'A" H 0 0 N N N 43.203 130.444 -8.666 -3.093 -2.604 0.303 "H5'A" YLA 58 YLA HAM HAM H 0 1 N N N 44.219 136.121 -7.785 5.859 0.272 0.560 HAM YLA 59 YLA HAMA HAMA H 0 0 N N N 44.985 134.840 -6.785 6.749 -1.162 -0.007 HAMA YLA 60 YLA HAN HAN H 0 1 N N N 46.535 134.492 -8.861 5.752 -0.890 -2.260 HAN YLA 61 YLA HANA HANA H 0 0 N N N 45.256 135.386 -9.751 4.862 0.543 -1.694 HANA YLA 62 YLA HAO HAO H 0 1 N N N 46.746 136.140 -6.325 7.913 0.229 -1.697 HAO YLA 63 YLA HAOA HAOA H 0 0 N N N 46.979 136.554 -8.058 7.023 1.663 -1.131 HAOA YLA 64 YLA HNAW HNAW H 0 0 N N N 45.678 138.188 -6.066 8.331 0.495 1.083 HNAW YLA 65 YLA HAI HAI H 0 1 N N N 45.087 130.656 -11.742 0.822 -3.281 1.706 HAI YLA 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YLA C O DOUB N N 1 YLA C CA SING N N 2 YLA C OAY SING N N 3 YLA N CA SING N N 4 YLA N1 C2 DOUB Y N 5 YLA N1 C6 SING Y N 6 YLA O1 C3 SING N N 7 YLA O1 CBA SING N N 8 YLA C2 N3 SING Y N 9 YLA C3 C7 SING N N 10 YLA N3 C4 DOUB Y N 11 YLA C4 C5 SING Y N 12 YLA C4 N9 SING Y N 13 YLA C5 C6 DOUB Y N 14 YLA C5 N7 SING Y N 15 YLA C6 N6 SING N N 16 YLA C7 C9 TRIP N N 17 YLA N7 C8 DOUB Y N 18 YLA C8 N9 SING Y N 19 YLA N9 "C1'" SING N N 20 YLA CA CB SING N N 21 YLA CB CAN SING N N 22 YLA "C1'" "C2'" SING N N 23 YLA "C1'" "O4'" SING N N 24 YLA "C2'" "O2'" SING N N 25 YLA "C2'" "C3'" SING N N 26 YLA "C3'" "O3'" SING N N 27 YLA "C3'" "C4'" SING N N 28 YLA "C4'" "O4'" SING N N 29 YLA "C4'" "C5'" SING N N 30 YLA "C5'" "O5'" SING N N 31 YLA "O5'" PBN SING N N 32 YLA OAD CBA DOUB N N 33 YLA OAF PBN DOUB N N 34 YLA OAI PBN SING N N 35 YLA CAM CAN SING N N 36 YLA CAM CAO SING N N 37 YLA CAO NAW SING N N 38 YLA NAW CBA SING N N 39 YLA OAY PBN SING N N 40 YLA N HN SING N N 41 YLA N HNA SING N N 42 YLA C2 H2 SING N N 43 YLA C3 H3 SING N N 44 YLA C3 H3A SING N N 45 YLA N6 HN6 SING N N 46 YLA N6 HN6A SING N N 47 YLA C8 H8 SING N N 48 YLA C9 H9 SING N N 49 YLA CA HA SING N N 50 YLA CB HB SING N N 51 YLA CB HBA SING N N 52 YLA "C1'" "H1'" SING N N 53 YLA "C2'" "H2'" SING N N 54 YLA "O2'" "HO2'" SING N N 55 YLA "C3'" "H3'" SING N N 56 YLA "O3'" "HO3'" SING N N 57 YLA "C4'" "H4'" SING N N 58 YLA "C5'" "H5'" SING N N 59 YLA "C5'" "H5'A" SING N N 60 YLA CAM HAM SING N N 61 YLA CAM HAMA SING N N 62 YLA CAN HAN SING N N 63 YLA CAN HANA SING N N 64 YLA CAO HAO SING N N 65 YLA CAO HAOA SING N N 66 YLA NAW HNAW SING N N 67 YLA OAI HAI SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YLA SMILES ACDLabs 12.01 "O=C(OCC#C)NCCCCC(N)C(=O)OP([O-])(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" YLA InChI InChI 1.03 "InChI=1S/C20H28N7O10P/c1-2-7-34-20(31)23-6-4-3-5-11(21)19(30)37-38(32,33)35-8-12-14(28)15(29)18(36-12)27-10-26-13-16(22)24-9-25-17(13)27/h1,9-12,14-15,18,28-29H,3-8,21H2,(H,23,31)(H,32,33)(H2,22,24,25)/p-1/t11-,12-,14-,15-,18-/m1/s1" YLA InChIKey InChI 1.03 BXXVGWFYYCXKTG-AJKMGBEJSA-M YLA SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCCCNC(=O)OCC#C)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" YLA SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)OCC#C)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" YLA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#CCOC(=O)NCCCC[C@H](C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" YLA SMILES "OpenEye OEToolkits" 1.7.6 "C#CCOC(=O)NCCCCC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YLA "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-({[(2R)-2-amino-6-{[(prop-2-yn-1-yloxy)carbonyl]amino}hexanoyl]oxy}phosphinato)adenosine" YLA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2R)-2-azanyl-6-(prop-2-ynoxycarbonylamino)hexanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YLA "Create component" 2013-11-28 EBI YLA "Initial release" 2014-03-19 RCSB #