data_YMK # _chem_comp.id YMK _chem_comp.name "(2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 B F6 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-19 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.085 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YMK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PF8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YMK C12 C1 C 0 1 N N R N N N -59.447 30.386 -39.148 2.728 3.283 0.087 C12 YMK 1 YMK C13 C2 C 0 1 N N N N N N -60.091 29.017 -39.167 4.244 3.118 0.212 C13 YMK 2 YMK B1 B1 B 0 1 N N N N N N -58.593 33.156 -41.236 -0.065 0.829 0.108 B1 YMK 3 YMK C1 C3 C 0 1 Y N N N N N -61.171 35.741 -40.369 -3.755 0.231 -0.138 C1 YMK 4 YMK C10 C4 C 0 1 N N N N N N -56.576 35.623 -41.264 -0.726 -1.577 2.031 C10 YMK 5 YMK C11 C5 C 0 1 N N N N N N -59.224 30.940 -40.535 2.068 1.903 0.033 C11 YMK 6 YMK C2 C6 C 0 1 Y N N N N N -59.952 35.121 -40.091 -2.452 -0.274 -0.140 C2 YMK 7 YMK C3 C7 C 0 1 Y N N N N N -59.813 34.121 -41.028 -1.633 0.825 0.034 C3 YMK 8 YMK C4 C8 C 0 1 N N N N N N -61.794 36.910 -39.695 -5.019 -0.574 -0.297 C4 YMK 9 YMK C5 C9 C 0 1 N N N N N N -61.309 33.365 -42.966 -2.018 3.291 0.324 C5 YMK 10 YMK C6 C10 C 0 1 Y N N N N N -56.448 33.777 -44.261 2.165 -2.181 0.066 C6 YMK 11 YMK C7 C11 C 0 1 Y N N N N N -57.400 32.982 -43.617 1.853 -0.910 -0.421 C7 YMK 12 YMK C8 C12 C 0 1 Y N N N N N -57.595 33.556 -42.380 0.717 -0.524 0.265 C8 YMK 13 YMK C9 C13 C 0 1 N N N N N N -55.899 33.642 -45.639 3.330 -3.034 -0.365 C9 YMK 14 YMK F1 F1 F 0 1 N N N N N N -62.541 36.551 -38.662 -5.999 0.213 -0.910 F1 YMK 15 YMK F2 F2 F 0 1 N N N N N N -62.578 37.597 -40.514 -4.760 -1.698 -1.089 F2 YMK 16 YMK F3 F3 F 0 1 N N N N N N -60.888 37.760 -39.235 -5.471 -0.985 0.962 F3 YMK 17 YMK F4 F4 F 0 1 N N N N N N -56.719 32.981 -46.444 4.437 -2.755 0.444 F4 YMK 18 YMK F5 F5 F 0 1 N N N N N N -54.741 32.998 -45.657 2.991 -4.386 -0.239 F5 YMK 19 YMK F6 F6 F 0 1 N N N N N N -55.684 34.821 -46.205 3.645 -2.755 -1.699 F6 YMK 20 YMK N1 N1 N 0 1 Y N N N N N -60.948 34.185 -41.817 -2.459 1.907 0.129 N1 YMK 21 YMK N2 N2 N 0 1 Y N N N N N -61.788 35.187 -41.409 -3.682 1.527 0.031 N2 YMK 22 YMK N3 N3 N 0 1 Y N N N N N -56.758 34.656 -42.339 0.410 -1.553 1.107 N3 YMK 23 YMK N4 N4 N 0 1 Y N N N N N -56.049 34.793 -43.502 1.269 -2.497 0.966 N4 YMK 24 YMK O1 O1 O 0 1 N N N N N N -58.393 32.058 -40.457 0.647 2.055 0.033 O1 YMK 25 YMK O2 O2 O 0 1 N N N N N N -59.283 28.092 -39.882 4.851 4.400 0.380 O2 YMK 26 YMK O3 O3 O 0 1 N N N N N N -58.199 30.327 -38.453 2.425 4.004 -1.108 O3 YMK 27 YMK H1 H1 H 0 1 N N N N N N -60.122 31.070 -38.614 2.350 3.832 0.949 H1 YMK 28 YMK H2 H2 H 0 1 N N N N N N -61.075 29.088 -39.653 4.472 2.492 1.076 H2 YMK 29 YMK H3 H3 H 0 1 N N N N N N -60.217 28.663 -38.133 4.634 2.647 -0.690 H3 YMK 30 YMK H4 H4 H 0 1 N N N N N N -55.838 36.379 -41.571 -1.607 -1.961 1.515 H4 YMK 31 YMK H5 H5 H 0 1 N N N N N N -57.536 36.115 -41.047 -0.492 -2.222 2.878 H5 YMK 32 YMK H6 H6 H 0 1 N N N N N N -56.217 35.105 -40.362 -0.926 -0.567 2.388 H6 YMK 33 YMK H7 H7 H 0 1 N N N N N N -60.190 31.230 -40.974 2.378 1.388 -0.877 H7 YMK 34 YMK H8 H8 H 0 1 N N N N N N -58.750 30.173 -41.165 2.372 1.321 0.902 H8 YMK 35 YMK H9 H9 H 0 1 N N N N N N -59.259 35.374 -39.302 -2.149 -1.304 -0.254 H9 YMK 36 YMK H10 H10 H 0 1 N N N N N N -62.278 33.699 -43.366 -1.950 3.503 1.391 H10 YMK 37 YMK H11 H11 H 0 1 N N N N N N -60.538 33.464 -43.744 -1.041 3.429 -0.137 H11 YMK 38 YMK H12 H12 H 0 1 N N N N N N -61.384 32.312 -42.656 -2.737 3.969 -0.136 H12 YMK 39 YMK H13 H13 H 0 1 N N N N N N -57.883 32.099 -44.009 2.386 -0.347 -1.173 H13 YMK 40 YMK H14 H14 H 0 1 N N N N N N -59.702 27.240 -39.883 5.813 4.372 0.466 H14 YMK 41 YMK H15 H15 H 0 1 N N N N N N -58.338 29.979 -37.580 2.732 3.572 -1.917 H15 YMK 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YMK F4 C9 SING N N 1 YMK F6 C9 SING N N 2 YMK F5 C9 SING N N 3 YMK C9 C6 SING N N 4 YMK C6 C7 SING Y N 5 YMK C6 N4 DOUB Y N 6 YMK C7 C8 DOUB Y N 7 YMK N4 N3 SING Y N 8 YMK C5 N1 SING N N 9 YMK C8 N3 SING Y N 10 YMK C8 B1 SING N N 11 YMK N3 C10 SING N N 12 YMK N1 N2 SING Y N 13 YMK N1 C3 SING Y N 14 YMK N2 C1 DOUB Y N 15 YMK B1 C3 SING N N 16 YMK B1 O1 SING N N 17 YMK C3 C2 DOUB Y N 18 YMK C11 O1 SING N N 19 YMK C11 C12 SING N N 20 YMK F2 C4 SING N N 21 YMK C1 C2 SING Y N 22 YMK C1 C4 SING N N 23 YMK O2 C13 SING N N 24 YMK C4 F3 SING N N 25 YMK C4 F1 SING N N 26 YMK C13 C12 SING N N 27 YMK C12 O3 SING N N 28 YMK C12 H1 SING N N 29 YMK C13 H2 SING N N 30 YMK C13 H3 SING N N 31 YMK C10 H4 SING N N 32 YMK C10 H5 SING N N 33 YMK C10 H6 SING N N 34 YMK C11 H7 SING N N 35 YMK C11 H8 SING N N 36 YMK C2 H9 SING N N 37 YMK C5 H10 SING N N 38 YMK C5 H11 SING N N 39 YMK C5 H12 SING N N 40 YMK C7 H13 SING N N 41 YMK O2 H14 SING N N 42 YMK O3 H15 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YMK InChI InChI 1.06 "InChI=1S/C13H15BF6N4O3/c1-23-10(3-8(21-23)12(15,16)17)14(27-6-7(26)5-25)11-4-9(13(18,19)20)22-24(11)2/h3-4,7,25-26H,5-6H2,1-2H3/t7-/m1/s1" YMK InChIKey InChI 1.06 ZMDZOWFKTCAOKY-SSDOTTSWSA-N YMK SMILES_CANONICAL CACTVS 3.385 "Cn1nc(cc1B(OC[C@H](O)CO)c2cc(nn2C)C(F)(F)F)C(F)(F)F" YMK SMILES CACTVS 3.385 "Cn1nc(cc1B(OC[CH](O)CO)c2cc(nn2C)C(F)(F)F)C(F)(F)F" YMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)OC[C@@H](CO)O" YMK SMILES "OpenEye OEToolkits" 2.0.7 "B(c1cc(nn1C)C(F)(F)F)(c2cc(nn2C)C(F)(F)F)OCC(CO)O" # _pdbx_chem_comp_identifier.comp_id YMK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-3-bis[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]boranyloxypropane-1,2-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YMK "Create component" 2023-06-19 PDBE YMK "Initial release" 2024-01-24 RCSB #