data_YN7 # _chem_comp.id YN7 _chem_comp.name "5-{(5S)-1-[2-({3-chloro-6-[(2S)-2,4-dimethylpiperazin-1-yl]-2-fluoropyridin-4-yl}amino)-2-oxoethyl]-4-oxo-4,6,7,8-tetrahydro-1H-dipyrrolo[1,2-a:2',3'-d]pyrimidin-3-yl}-3,4-difluoro-2-hydroxybenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H28 Cl F3 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-12 _chem_comp.pdbx_modified_date 2022-03-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 645.032 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YN7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7LWG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YN7 C11 C1 C 0 1 Y N N 46.385 0.323 -36.492 -6.539 1.427 -1.389 C11 YN7 1 YN7 C13 C2 C 0 1 Y N N 46.475 -0.033 -37.843 -5.273 1.753 -1.897 C13 YN7 2 YN7 C02 C3 C 0 1 N N N 43.504 -2.541 -40.616 -3.050 -2.377 0.699 C02 YN7 3 YN7 C04 C4 C 0 1 Y N N 43.591 -3.227 -39.251 -2.571 -1.089 1.014 C04 YN7 4 YN7 C05 C5 C 0 1 Y N N 44.150 -2.916 -37.989 -3.028 0.280 0.749 C05 YN7 5 YN7 C06 C6 C 0 1 Y N N 44.884 -1.812 -37.519 -4.245 0.681 0.001 C06 YN7 6 YN7 C07 C7 C 0 1 Y N N 44.815 -1.438 -36.159 -5.511 0.364 0.504 C07 YN7 7 YN7 C09 C8 C 0 1 Y N N 45.549 -0.404 -35.658 -6.648 0.736 -0.190 C09 YN7 8 YN7 C14 C9 C 0 1 N N N 47.351 0.744 -38.833 -5.154 2.491 -3.167 C14 YN7 9 YN7 C17 C10 C 0 1 Y N N 45.726 -1.086 -38.345 -4.126 1.376 -1.195 C17 YN7 10 YN7 C18 C11 C 0 1 Y N N 43.913 -4.035 -37.161 -2.119 1.106 1.325 C18 YN7 11 YN7 C20 C12 C 0 1 N N N 42.775 -6.251 -37.359 0.010 0.911 2.642 C20 YN7 12 YN7 C21 C13 C 0 1 N N N 41.354 -6.274 -36.960 1.191 1.003 1.710 C21 YN7 13 YN7 C23 C14 C 0 1 Y N N 39.790 -7.823 -35.739 3.491 1.462 1.331 C23 YN7 14 YN7 C24 C15 C 0 1 Y N N 38.727 -7.722 -36.651 3.594 0.541 0.292 C24 YN7 15 YN7 C25 C16 C 0 1 Y N N 37.496 -8.184 -36.215 4.725 0.554 -0.512 C25 YN7 16 YN7 C27 C17 C 0 1 N N S 36.567 -7.732 -38.523 6.105 -0.180 -2.277 C27 YN7 17 YN7 C28 C18 C 0 1 N N N 37.294 -8.842 -39.355 7.277 -0.461 -1.334 C28 YN7 18 YN7 C29 C19 C 0 1 N N N 35.282 -7.358 -39.209 6.156 -1.151 -3.459 C29 YN7 19 YN7 C31 C20 C 0 1 N N N 33.129 -7.944 -39.626 6.149 -3.496 -4.064 C31 YN7 20 YN7 C32 C21 C 0 1 N N N 33.943 -8.451 -37.595 4.763 -2.710 -2.240 C32 YN7 21 YN7 C33 C22 C 0 1 N N N 35.114 -8.695 -36.716 4.712 -1.740 -1.058 C33 YN7 22 YN7 C35 C23 C 0 1 Y N N 38.324 -8.843 -34.204 5.632 2.317 0.678 C35 YN7 23 YN7 C37 C24 C 0 1 Y N N 39.611 -8.421 -34.514 4.537 2.366 1.521 C37 YN7 24 YN7 C40 C25 C 0 1 Y N N 42.995 -4.537 -39.083 -1.385 -0.971 1.749 C40 YN7 25 YN7 C41 C26 C 0 1 N N N 42.198 -4.644 -41.384 -1.196 -3.280 1.830 C41 YN7 26 YN7 C42 C27 C 0 1 N N N 41.595 -5.052 -42.482 -0.598 -4.634 2.173 C42 YN7 27 YN7 C43 C28 C 0 1 N N N 41.605 -3.718 -43.472 -1.303 -5.618 1.214 C43 YN7 28 YN7 C44 C29 C 0 1 N N N 42.504 -2.874 -43.002 -2.631 -4.885 0.928 C44 YN7 29 YN7 F08 F1 F 0 1 N N N 43.983 -2.076 -35.259 -5.623 -0.307 1.671 F08 YN7 30 YN7 F10 F2 F 0 1 N N N 45.467 -0.094 -34.338 -7.868 0.427 0.301 F10 YN7 31 YN7 F36 F3 F 0 1 N N N 38.104 -9.420 -32.998 6.649 3.189 0.855 F36 YN7 32 YN7 N01 N1 N 0 1 N N N 42.796 -3.293 -41.553 -2.342 -3.454 1.122 N01 YN7 33 YN7 N16 N2 N 0 1 N N N 48.030 1.837 -38.319 -3.936 2.804 -3.653 N16 YN7 34 YN7 N19 N3 N 0 1 Y N N 43.207 -4.955 -37.868 -1.140 0.360 1.921 N19 YN7 35 YN7 N22 N4 N 0 1 N N N 41.126 -7.428 -36.156 2.367 1.485 2.158 N22 YN7 36 YN7 N26 N5 N 0 1 N N N 36.366 -8.086 -37.118 4.839 -0.362 -1.552 N26 YN7 37 YN7 N30 N6 N 0 1 N N N 34.217 -8.178 -38.908 6.029 -2.529 -2.965 N30 YN7 38 YN7 N34 N7 N 0 1 Y N N 37.300 -8.740 -35.029 5.697 1.429 -0.299 N34 YN7 39 YN7 N45 N8 N 0 1 N N N 42.310 -5.269 -40.140 -0.745 -2.088 2.128 N45 YN7 40 YN7 O03 O1 O 0 1 N N N 43.960 -1.463 -40.878 -4.081 -2.520 0.064 O03 YN7 41 YN7 O12 O2 O 0 1 N N N 47.136 1.360 -35.895 -7.657 1.791 -2.067 O12 YN7 42 YN7 O15 O3 O 0 1 N N N 47.357 0.500 -39.987 -6.154 2.819 -3.776 O15 YN7 43 YN7 O39 O4 O 0 1 N N N 40.520 -5.479 -37.301 1.082 0.643 0.557 O39 YN7 44 YN7 CL38 CL1 CL 0 0 N N N 40.963 -8.655 -33.415 4.464 3.538 2.799 CL38 YN7 45 YN7 H171 H1 H 0 0 N N N 45.800 -1.343 -39.391 -3.149 1.625 -1.582 H171 YN7 46 YN7 H181 H2 H 0 0 N N N 44.239 -4.141 -36.137 -2.161 2.185 1.313 H181 YN7 47 YN7 H202 H3 H 0 0 N N N 42.930 -7.005 -38.145 0.259 0.261 3.481 H202 YN7 48 YN7 H201 H4 H 0 0 N N N 43.389 -6.505 -36.482 -0.237 1.906 3.014 H201 YN7 49 YN7 H241 H5 H 0 0 N N N 38.862 -7.307 -37.639 2.804 -0.174 0.115 H241 YN7 50 YN7 H271 H6 H 0 0 N N N 37.218 -6.846 -38.552 6.170 0.844 -2.644 H271 YN7 51 YN7 H283 H7 H 0 0 N N N 38.235 -9.118 -38.856 7.212 -1.485 -0.968 H283 YN7 52 YN7 H281 H8 H 0 0 N N N 36.646 -9.727 -39.430 8.216 -0.326 -1.872 H281 YN7 53 YN7 H282 H9 H 0 0 N N N 37.512 -8.460 -40.363 7.239 0.230 -0.492 H282 YN7 54 YN7 H292 H10 H 0 0 N N N 35.449 -7.395 -40.296 5.337 -0.933 -4.144 H292 YN7 55 YN7 H291 H11 H 0 0 N N N 35.020 -6.331 -38.913 7.107 -1.038 -3.981 H291 YN7 56 YN7 H312 H12 H 0 0 N N N 32.332 -8.639 -39.323 7.123 -3.384 -4.541 H312 YN7 57 YN7 H311 H13 H 0 0 N N N 32.795 -6.909 -39.459 6.051 -4.507 -3.670 H311 YN7 58 YN7 H313 H14 H 0 0 N N N 33.356 -8.089 -40.693 5.363 -3.313 -4.797 H313 YN7 59 YN7 H322 H15 H 0 0 N N N 33.388 -7.595 -37.184 4.698 -3.734 -1.873 H322 YN7 60 YN7 H321 H16 H 0 0 N N N 33.308 -9.349 -37.565 3.928 -2.510 -2.911 H321 YN7 61 YN7 H332 H17 H 0 0 N N N 34.864 -8.315 -35.715 3.761 -1.852 -0.536 H332 YN7 62 YN7 H331 H18 H 0 0 N N N 35.273 -9.782 -36.666 5.531 -1.958 -0.373 H331 YN7 63 YN7 H421 H19 H 0 0 N N N 40.564 -5.370 -42.266 0.477 -4.632 1.994 H421 YN7 64 YN7 H422 H20 H 0 0 N N N 42.146 -5.885 -42.944 -0.810 -4.892 3.210 H422 YN7 65 YN7 H431 H21 H 0 0 N N N 40.612 -3.245 -43.473 -0.727 -5.751 0.299 H431 YN7 66 YN7 H432 H22 H 0 0 N N N 41.870 -4.015 -44.497 -1.484 -6.575 1.703 H432 YN7 67 YN7 H442 H23 H 0 0 N N N 43.423 -2.927 -43.604 -2.950 -5.069 -0.097 H442 YN7 68 YN7 H441 H24 H 0 0 N N N 42.109 -1.848 -43.027 -3.400 -5.212 1.628 H441 YN7 69 YN7 H161 H25 H 0 0 N N N 48.541 2.441 -38.931 -3.138 2.543 -3.167 H161 YN7 70 YN7 H162 H26 H 0 0 N N N 48.009 2.022 -37.336 -3.858 3.290 -4.489 H162 YN7 71 YN7 H221 H27 H 0 0 N N N 41.908 -7.983 -35.870 2.432 1.849 3.055 H221 YN7 72 YN7 H121 H29 H 0 0 N N N 46.913 1.423 -34.974 -7.998 2.662 -1.824 H121 YN7 73 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YN7 C43 C44 SING N N 1 YN7 C43 C42 SING N N 2 YN7 C44 N01 SING N N 3 YN7 C42 C41 SING N N 4 YN7 N01 C41 SING N N 5 YN7 N01 C02 SING N N 6 YN7 C41 N45 DOUB N N 7 YN7 O03 C02 DOUB N N 8 YN7 C02 C04 SING N N 9 YN7 N45 C40 SING N N 10 YN7 O15 C14 DOUB N N 11 YN7 C31 N30 SING N N 12 YN7 C28 C27 SING N N 13 YN7 C04 C40 DOUB Y N 14 YN7 C04 C05 SING Y N 15 YN7 C29 N30 SING N N 16 YN7 C29 C27 SING N N 17 YN7 C40 N19 SING Y N 18 YN7 N30 C32 SING N N 19 YN7 C14 N16 SING N N 20 YN7 C14 C13 SING N N 21 YN7 C27 N26 SING N N 22 YN7 C17 C13 DOUB Y N 23 YN7 C17 C06 SING Y N 24 YN7 C05 C06 SING N N 25 YN7 C05 C18 DOUB Y N 26 YN7 N19 C20 SING N N 27 YN7 N19 C18 SING Y N 28 YN7 C13 C11 SING Y N 29 YN7 C32 C33 SING N N 30 YN7 C06 C07 DOUB Y N 31 YN7 C20 C21 SING N N 32 YN7 O39 C21 DOUB N N 33 YN7 N26 C33 SING N N 34 YN7 N26 C25 SING N N 35 YN7 C21 N22 SING N N 36 YN7 C24 C25 DOUB Y N 37 YN7 C24 C23 SING Y N 38 YN7 C11 O12 SING N N 39 YN7 C11 C09 DOUB Y N 40 YN7 C25 N34 SING Y N 41 YN7 C07 C09 SING Y N 42 YN7 C07 F08 SING N N 43 YN7 N22 C23 SING N N 44 YN7 C23 C37 DOUB Y N 45 YN7 C09 F10 SING N N 46 YN7 N34 C35 DOUB Y N 47 YN7 C37 C35 SING Y N 48 YN7 C37 CL38 SING N N 49 YN7 C35 F36 SING N N 50 YN7 C17 H171 SING N N 51 YN7 C18 H181 SING N N 52 YN7 C20 H202 SING N N 53 YN7 C20 H201 SING N N 54 YN7 C24 H241 SING N N 55 YN7 C27 H271 SING N N 56 YN7 C28 H283 SING N N 57 YN7 C28 H281 SING N N 58 YN7 C28 H282 SING N N 59 YN7 C29 H292 SING N N 60 YN7 C29 H291 SING N N 61 YN7 C31 H312 SING N N 62 YN7 C31 H311 SING N N 63 YN7 C31 H313 SING N N 64 YN7 C32 H322 SING N N 65 YN7 C32 H321 SING N N 66 YN7 C33 H332 SING N N 67 YN7 C33 H331 SING N N 68 YN7 C42 H421 SING N N 69 YN7 C42 H422 SING N N 70 YN7 C43 H431 SING N N 71 YN7 C43 H432 SING N N 72 YN7 C44 H442 SING N N 73 YN7 C44 H441 SING N N 74 YN7 N16 H161 SING N N 75 YN7 N16 H162 SING N N 76 YN7 N22 H221 SING N N 77 YN7 O12 H121 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YN7 SMILES ACDLabs 12.01 "CN1CC(C)N(CC1)c1nc(F)c(Cl)c(NC(=O)Cn2cc(c3cc(C(N)=O)c(O)c(F)c3F)c3C(=O)N4CCCC4=Nc32)c1" YN7 InChI InChI 1.03 "InChI=1S/C29H28ClF3N8O4/c1-13-10-38(2)6-7-40(13)19-9-17(22(30)26(33)36-19)35-20(42)12-39-11-16(14-8-15(27(34)44)25(43)24(32)23(14)31)21-28(39)37-18-4-3-5-41(18)29(21)45/h8-9,11,13,43H,3-7,10,12H2,1-2H3,(H2,34,44)(H,35,36,42)/t13-/m0/s1" YN7 InChIKey InChI 1.03 LGAFZGSECXDYIR-ZDUSSCGKSA-N YN7 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(C)CCN1c2cc(NC(=O)Cn3cc(c4cc(C(N)=O)c(O)c(F)c4F)c5C(=O)N6CCCC6=Nc35)c(Cl)c(F)n2" YN7 SMILES CACTVS 3.385 "C[CH]1CN(C)CCN1c2cc(NC(=O)Cn3cc(c4cc(C(N)=O)c(O)c(F)c4F)c5C(=O)N6CCCC6=Nc35)c(Cl)c(F)n2" YN7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CN(CCN1c2cc(c(c(n2)F)Cl)NC(=O)Cn3cc(c4c3N=C5CCCN5C4=O)c6cc(c(c(c6F)F)O)C(=O)N)C" YN7 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1c2cc(c(c(n2)F)Cl)NC(=O)Cn3cc(c4c3N=C5CCCN5C4=O)c6cc(c(c(c6F)F)O)C(=O)N)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YN7 "SYSTEMATIC NAME" ACDLabs 12.01 "5-{(5S)-1-[2-({3-chloro-6-[(2S)-2,4-dimethylpiperazin-1-yl]-2-fluoropyridin-4-yl}amino)-2-oxoethyl]-4-oxo-4,6,7,8-tetrahydro-1H-dipyrrolo[1,2-a:2',3'-d]pyrimidin-3-yl}-3,4-difluoro-2-hydroxybenzamide" YN7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[6-[2-[[3-chloranyl-6-[(2~{S})-2,4-dimethylpiperazin-1-yl]-2-fluoranyl-pyridin-4-yl]amino]-2-oxidanylidene-ethyl]-2-oxidanylidene-1,6,8-triazatricyclo[7.3.0.0^{3,7}]dodeca-3(7),4,8-trien-4-yl]-3,4-bis(fluoranyl)-2-oxidanyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YN7 "Create component" 2021-03-12 RCSB YN7 "Initial release" 2022-03-09 RCSB ##