data_YO3 # _chem_comp.id YO3 _chem_comp.name YO3-biotin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H19 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-10-17 _chem_comp.pdbx_modified_date 2020-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 315.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YO3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UP0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YO3 C01 C1 C 0 1 N N N -11.210 3.456 -6.042 5.552 -2.663 0.005 C01 YO3 1 YO3 C03 C2 C 0 1 N N N -12.133 4.943 -7.658 3.153 -2.219 -0.001 C03 YO3 2 YO3 C04 C3 C 0 1 N N N -12.918 6.035 -8.007 2.070 -1.421 -0.001 C04 YO3 3 YO3 C05 C4 C 0 1 N N N -13.569 6.729 -6.994 2.226 -0.008 -0.001 C05 YO3 4 YO3 C06 C5 C 0 1 N N N -14.333 7.753 -7.263 1.121 0.836 -0.001 C06 YO3 5 YO3 C07 C6 C 0 1 N N N -14.630 7.973 -8.745 -0.168 0.299 -0.000 C07 YO3 6 YO3 C08 C7 C 0 1 N N N -15.494 8.862 -9.165 -1.253 1.129 0.000 C08 YO3 7 YO3 C09 C8 C 0 1 Y N N -15.606 8.893 -10.672 -2.555 0.586 0.001 C09 YO3 8 YO3 C11 C9 C 0 1 Y N N -15.212 8.506 -12.774 -4.193 -0.864 -0.003 C11 YO3 9 YO3 C12 C10 C 0 1 Y N N -14.754 8.096 -14.040 -5.045 -1.955 -0.003 C12 YO3 10 YO3 C13 C11 C 0 1 Y N N -15.388 8.589 -15.177 -6.413 -1.762 0.000 C13 YO3 11 YO3 C14 C12 C 0 1 Y N N -16.452 9.486 -15.077 -6.942 -0.480 0.004 C14 YO3 12 YO3 C15 C13 C 0 1 Y N N -16.887 9.890 -13.831 -6.109 0.618 0.004 C15 YO3 13 YO3 C16 C14 C 0 1 Y N N -16.255 9.392 -12.677 -4.724 0.437 0.001 C16 YO3 14 YO3 C18 C15 C 0 1 N N N -17.486 10.492 -10.782 -3.756 2.754 0.001 C18 YO3 15 YO3 C19 C16 C 0 1 Y N N -13.451 6.357 -5.656 3.599 0.534 -0.001 C19 YO3 16 YO3 C20 C17 C 0 1 Y N N -14.144 7.100 -4.652 3.838 1.906 -0.000 C20 YO3 17 YO3 C21 C18 C 0 1 Y N N -14.020 6.716 -3.319 5.136 2.371 0.001 C21 YO3 18 YO3 C22 C19 C 0 1 Y N N -13.213 5.613 -2.993 6.199 1.480 0.001 C22 YO3 19 YO3 C23 C20 C 0 1 Y N N -12.540 4.896 -3.988 5.977 0.119 -0.001 C23 YO3 20 YO3 C24 C21 C 0 1 Y N N -12.668 5.287 -5.360 4.675 -0.369 -0.001 C24 YO3 21 YO3 N02 N1 N 0 1 N N N -12.030 4.606 -6.371 4.424 -1.728 -0.001 N02 YO3 22 YO3 N17 N2 N 1 1 Y N N -16.475 9.618 -11.361 -3.670 1.291 0.001 N17 YO3 23 YO3 O10 O1 O 0 1 Y N N -14.802 8.194 -11.499 -2.846 -0.731 -0.005 O10 YO3 24 YO3 H1 H1 H 0 1 N N N -11.218 3.299 -4.953 5.175 -3.686 0.009 H1 YO3 25 YO3 H2 H2 H 0 1 N N N -11.612 2.564 -6.544 6.161 -2.503 -0.885 H2 YO3 26 YO3 H3 H3 H 0 1 N N N -10.178 3.633 -6.379 6.158 -2.496 0.895 H3 YO3 27 YO3 H4 H4 H 0 1 N N N -11.614 4.376 -8.417 3.009 -3.290 0.003 H4 YO3 28 YO3 H5 H5 H 0 1 N N N -13.020 6.337 -9.039 1.081 -1.854 -0.001 H5 YO3 29 YO3 H6 H6 H 0 1 N N N -14.727 8.399 -6.492 1.260 1.907 -0.001 H6 YO3 30 YO3 H7 H7 H 0 1 N N N -14.107 7.372 -9.474 -0.306 -0.772 -0.000 H7 YO3 31 YO3 H8 H8 H 0 1 N N N -16.064 9.502 -8.508 -1.114 2.200 -0.000 H8 YO3 32 YO3 H10 H10 H 0 1 N N N -13.924 7.410 -14.128 -4.641 -2.957 -0.006 H10 YO3 33 YO3 H11 H11 H 0 1 N N N -15.051 8.272 -16.153 -7.075 -2.615 -0.000 H11 YO3 34 YO3 H12 H12 H 0 1 N N N -16.932 9.862 -15.969 -8.013 -0.342 0.005 H12 YO3 35 YO3 H13 H13 H 0 1 N N N -17.709 10.585 -13.742 -6.526 1.614 0.006 H13 YO3 36 YO3 H14 H14 H 0 1 N N N -17.412 10.462 -9.685 -3.777 3.116 1.028 H14 YO3 37 YO3 H15 H15 H 0 1 N N N -17.324 11.522 -11.133 -2.889 3.169 -0.513 H15 YO3 38 YO3 H16 H16 H 0 1 N N N -18.485 10.152 -11.091 -4.666 3.064 -0.513 H16 YO3 39 YO3 H17 H17 H 0 1 N N N -14.756 7.948 -4.923 3.012 2.602 -0.001 H17 YO3 40 YO3 H18 H18 H 0 1 N N N -14.539 7.260 -2.544 5.326 3.434 0.002 H18 YO3 41 YO3 H19 H19 H 0 1 N N N -13.111 5.315 -1.960 7.212 1.857 0.001 H19 YO3 42 YO3 H20 H20 H 0 1 N N N -11.925 4.049 -3.722 6.812 -0.566 -0.002 H20 YO3 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YO3 C13 C14 DOUB Y N 1 YO3 C13 C12 SING Y N 2 YO3 C14 C15 SING Y N 3 YO3 C12 C11 DOUB Y N 4 YO3 C15 C16 DOUB Y N 5 YO3 C11 C16 SING Y N 6 YO3 C11 O10 SING Y N 7 YO3 C16 N17 SING Y N 8 YO3 O10 C09 SING Y N 9 YO3 N17 C18 SING N N 10 YO3 N17 C09 DOUB Y N 11 YO3 C09 C08 SING N N 12 YO3 C08 C07 DOUB N E 13 YO3 C07 C06 SING N N 14 YO3 C04 C03 DOUB N N 15 YO3 C04 C05 SING N N 16 YO3 C03 N02 SING N N 17 YO3 C06 C05 DOUB N E 18 YO3 C05 C19 SING N N 19 YO3 N02 C01 SING N N 20 YO3 N02 C24 SING N N 21 YO3 C19 C24 DOUB Y N 22 YO3 C19 C20 SING Y N 23 YO3 C24 C23 SING Y N 24 YO3 C20 C21 DOUB Y N 25 YO3 C23 C22 DOUB Y N 26 YO3 C21 C22 SING Y N 27 YO3 C01 H1 SING N N 28 YO3 C01 H2 SING N N 29 YO3 C01 H3 SING N N 30 YO3 C03 H4 SING N N 31 YO3 C04 H5 SING N N 32 YO3 C06 H6 SING N N 33 YO3 C07 H7 SING N N 34 YO3 C08 H8 SING N N 35 YO3 C12 H10 SING N N 36 YO3 C13 H11 SING N N 37 YO3 C14 H12 SING N N 38 YO3 C15 H13 SING N N 39 YO3 C18 H14 SING N N 40 YO3 C18 H15 SING N N 41 YO3 C18 H16 SING N N 42 YO3 C20 H17 SING N N 43 YO3 C21 H18 SING N N 44 YO3 C22 H19 SING N N 45 YO3 C23 H20 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YO3 SMILES ACDLabs 12.01 "CN2C=CC(c1c2cccc1)=[C@H][C@H]=[C@H]c3[n+](c4c(o3)cccc4)C" YO3 InChI InChI 1.03 "InChI=1S/C21H19N2O/c1-22-15-14-16(17-9-3-4-10-18(17)22)8-7-13-21-23(2)19-11-5-6-12-20(19)24-21/h3-15H,1-2H3/q+1" YO3 InChIKey InChI 1.03 VHMUTYCKXYROKA-UHFFFAOYSA-N YO3 SMILES_CANONICAL CACTVS 3.385 "CN1C=C\C(=C/C=C/c2oc3ccccc3[n+]2C)c4ccccc14" YO3 SMILES CACTVS 3.385 "CN1C=CC(=CC=Cc2oc3ccccc3[n+]2C)c4ccccc14" YO3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1c2ccccc2oc1/C=C/C=C/3\C=CN(c4c3cccc4)C" YO3 SMILES "OpenEye OEToolkits" 2.0.7 "C[n+]1c2ccccc2oc1C=CC=C3C=CN(c4c3cccc4)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YO3 "SYSTEMATIC NAME" ACDLabs 12.01 "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium" YO3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-methyl-2-[(~{E},3~{E})-3-(1-methylquinolin-4-ylidene)prop-1-enyl]-1,3-benzoxazol-3-ium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id YO3 _pdbx_chem_comp_synonyms.name "3-methyl-2-[(1E,3E)-3-(1-methylquinolin-4(1H)-ylidene)prop-1-en-1-yl]-1,3-benzoxazol-3-ium" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YO3 "Create component" 2019-10-17 RCSB YO3 "Modify synonyms" 2020-06-05 PDBE YO3 "Initial release" 2020-10-21 RCSB ##