data_YS2 # _chem_comp.id YS2 _chem_comp.name "(1R,3R,7E,17beta)-17-[(2R)-5-hydroxypentan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H38 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-23 _chem_comp.pdbx_modified_date 2012-05-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 374.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YS2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VRT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YS2 O3 O3 O 0 1 N N N 10.515 -5.784 27.387 -8.149 -2.608 -1.012 O3 YS2 1 YS2 C24 C24 C 0 1 N N N 11.399 -4.738 26.968 -7.315 -2.057 0.009 C24 YS2 2 YS2 C23 C23 C 0 1 N N N 12.679 -4.792 27.793 -6.158 -1.291 -0.635 C23 YS2 3 YS2 C22 C22 C 0 1 N N N 13.056 -3.409 28.309 -5.266 -0.701 0.459 C22 YS2 4 YS2 C20 C20 C 0 1 N N R 12.901 -2.358 27.216 -4.108 0.065 -0.185 C20 YS2 5 YS2 C21 C21 C 0 1 N N N 11.697 -1.463 27.486 -4.658 1.269 -0.952 C21 YS2 6 YS2 C17 C17 C 0 1 N N R 14.171 -1.533 27.069 -3.148 0.549 0.904 C17 YS2 7 YS2 C13 C13 C 0 1 N N R 13.878 -0.112 26.622 -1.971 1.283 0.282 C13 YS2 8 YS2 C18 C18 C 0 1 N N N 12.716 -0.128 25.640 -1.635 0.646 -1.068 C18 YS2 9 YS2 C12 C12 C 0 1 N N N 13.622 0.907 27.713 -2.066 2.782 0.117 C12 YS2 10 YS2 C11 C11 C 0 1 N N N 13.264 2.242 27.051 -0.804 3.247 -0.629 C11 YS2 11 YS2 C9 C9 C 0 1 N N N 14.179 2.679 25.896 0.470 2.883 0.131 C9 YS2 12 YS2 C16 C16 C 0 1 N N N 15.104 -2.102 26.000 -2.524 -0.661 1.649 C16 YS2 13 YS2 C15 C15 C 0 1 N N N 15.578 -0.928 25.140 -0.983 -0.514 1.505 C15 YS2 14 YS2 C14 C14 C 0 1 N N S 15.146 0.300 25.924 -0.807 0.991 1.272 C14 YS2 15 YS2 C8 C8 C 0 1 N N N 14.790 1.517 25.139 0.442 1.423 0.562 C8 YS2 16 YS2 C7 C7 C 0 1 N N N 15.002 1.581 23.818 1.450 0.591 0.326 C7 YS2 17 YS2 C6 C6 C 0 1 N N N 14.643 2.787 23.078 2.651 1.071 -0.376 C6 YS2 18 YS2 C5 C5 C 0 1 N N N 14.222 2.694 21.809 3.612 0.216 -0.708 C5 YS2 19 YS2 C4 C4 C 0 1 N N N 13.850 3.941 21.043 4.908 0.712 -1.309 C4 YS2 20 YS2 C10 C10 C 0 1 N N N 14.119 1.342 21.145 3.432 -1.268 -0.488 C10 YS2 21 YS2 C1 C1 C 0 1 N N R 14.855 1.374 19.810 4.599 -1.782 0.364 C1 YS2 22 YS2 O1 O1 O 0 1 N N N 14.502 0.218 19.043 4.589 -3.211 0.381 O1 YS2 23 YS2 C2 C2 C 0 1 N N N 14.468 2.612 19.056 5.893 -1.287 -0.242 C2 YS2 24 YS2 C28 C28 C 0 1 N N N 14.022 2.518 17.818 6.842 -2.128 -0.570 C28 YS2 25 YS2 C3 C3 C 0 1 N N R 14.588 3.957 19.710 6.073 0.194 -0.455 C3 YS2 26 YS2 O2 O2 O 0 1 N N N 15.970 4.258 19.933 6.083 0.863 0.808 O2 YS2 27 YS2 H1 H1 H 0 1 N N N 9.717 -5.750 26.872 -8.905 -3.108 -0.676 H1 YS2 28 YS2 H2 H2 H 0 1 N N N 11.643 -4.869 25.904 -7.901 -1.377 0.629 H2 YS2 29 YS2 H3 H3 H 0 1 N N N 10.909 -3.764 27.114 -6.919 -2.862 0.628 H3 YS2 30 YS2 H4 H4 H 0 1 N N N 12.527 -5.466 28.649 -5.573 -1.971 -1.254 H4 YS2 31 YS2 H5 H5 H 0 1 N N N 13.496 -5.176 27.164 -6.555 -0.486 -1.253 H5 YS2 32 YS2 H6 H6 H 0 1 N N N 14.102 -3.424 28.648 -5.851 -0.021 1.079 H6 YS2 33 YS2 H7 H7 H 0 1 N N N 12.401 -3.149 29.154 -4.869 -1.506 1.078 H7 YS2 34 YS2 H8 H8 H 0 1 N N N 12.726 -2.882 26.265 -3.576 -0.592 -0.872 H8 YS2 35 YS2 H9 H9 H 0 1 N N N 10.794 -2.083 27.588 -3.833 1.814 -1.411 H9 YS2 36 YS2 H10 H10 H 0 1 N N N 11.861 -0.899 28.416 -5.341 0.924 -1.728 H10 YS2 37 YS2 H11 H11 H 0 1 N N N 11.567 -0.761 26.649 -5.190 1.926 -0.264 H11 YS2 38 YS2 H12 H12 H 0 1 N N N 14.700 -1.508 28.033 -3.671 1.198 1.607 H12 YS2 39 YS2 H13 H13 H 0 1 N N N 11.797 -0.431 26.163 -2.443 0.841 -1.773 H13 YS2 40 YS2 H14 H14 H 0 1 N N N 12.582 0.878 25.215 -0.708 1.074 -1.451 H14 YS2 41 YS2 H15 H15 H 0 1 N N N 12.929 -0.843 24.831 -1.513 -0.430 -0.942 H15 YS2 42 YS2 H16 H16 H 0 1 N N N 12.788 0.571 28.347 -2.953 3.035 -0.463 H16 YS2 43 YS2 H17 H17 H 0 1 N N N 14.526 1.028 28.329 -2.115 3.259 1.096 H17 YS2 44 YS2 H18 H18 H 0 1 N N N 13.299 3.023 27.825 -0.779 2.777 -1.612 H18 YS2 45 YS2 H19 H19 H 0 1 N N N 12.240 2.161 26.659 -0.844 4.329 -0.754 H19 YS2 46 YS2 H20 H20 H 0 1 N N N 14.993 3.293 26.309 1.333 3.049 -0.515 H20 YS2 47 YS2 H21 H21 H 0 1 N N N 13.587 3.282 25.191 0.555 3.516 1.014 H21 YS2 48 YS2 H22 H22 H 0 1 N N N 14.564 -2.831 25.378 -2.806 -0.638 2.701 H22 YS2 49 YS2 H23 H23 H 0 1 N N N 15.966 -2.593 26.475 -2.857 -1.593 1.192 H23 YS2 50 YS2 H24 H24 H 0 1 N N N 15.098 -0.949 24.151 -0.478 -0.825 2.420 H24 YS2 51 YS2 H25 H25 H 0 1 N N N 16.671 -0.949 25.018 -0.619 -1.083 0.649 H25 YS2 52 YS2 H26 H26 H 0 1 N N N 15.915 0.548 26.670 -0.940 1.544 2.201 H26 YS2 53 YS2 H27 H27 H 0 1 N N N 15.439 0.740 23.300 1.389 -0.437 0.649 H27 YS2 54 YS2 H28 H28 H 0 1 N N N 14.717 3.754 23.553 2.751 2.118 -0.620 H28 YS2 55 YS2 H29 H29 H 0 1 N N N 14.131 4.829 21.629 5.006 0.337 -2.327 H29 YS2 56 YS2 H30 H30 H 0 1 N N N 12.765 3.950 20.862 4.914 1.802 -1.318 H30 YS2 57 YS2 H31 H31 H 0 1 N N N 13.060 1.097 20.974 2.491 -1.449 0.033 H31 YS2 58 YS2 H32 H32 H 0 1 N N N 14.572 0.579 21.795 3.423 -1.783 -1.449 H32 YS2 59 YS2 H33 H33 H 0 1 N N N 15.938 1.388 20.000 4.504 -1.403 1.382 H33 YS2 60 YS2 H34 H34 H 0 1 N N N 14.747 -0.566 19.520 5.302 -3.603 0.903 H34 YS2 61 YS2 H35 H35 H 0 1 N N N 13.935 1.550 17.347 7.764 -1.761 -0.998 H35 YS2 62 YS2 H36 H36 H 0 1 N N N 13.743 3.409 17.275 6.703 -3.187 -0.413 H36 YS2 63 YS2 H37 H37 H 0 1 N N N 14.133 4.719 19.059 7.014 0.377 -0.974 H37 YS2 64 YS2 H38 H38 H 0 1 N N N 16.046 5.110 20.347 6.790 0.573 1.401 H38 YS2 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YS2 C28 C2 DOUB N N 1 YS2 O1 C1 SING N N 2 YS2 C2 C3 SING N N 3 YS2 C2 C1 SING N N 4 YS2 C3 O2 SING N N 5 YS2 C3 C4 SING N N 6 YS2 C1 C10 SING N N 7 YS2 C4 C5 SING N N 8 YS2 C10 C5 SING N N 9 YS2 C5 C6 DOUB N N 10 YS2 C6 C7 SING N N 11 YS2 C7 C8 DOUB N E 12 YS2 C8 C9 SING N N 13 YS2 C8 C14 SING N N 14 YS2 C15 C14 SING N N 15 YS2 C15 C16 SING N N 16 YS2 C18 C13 SING N N 17 YS2 C9 C11 SING N N 18 YS2 C14 C13 SING N N 19 YS2 C16 C17 SING N N 20 YS2 C13 C17 SING N N 21 YS2 C13 C12 SING N N 22 YS2 C24 O3 SING N N 23 YS2 C24 C23 SING N N 24 YS2 C11 C12 SING N N 25 YS2 C17 C20 SING N N 26 YS2 C20 C21 SING N N 27 YS2 C20 C22 SING N N 28 YS2 C23 C22 SING N N 29 YS2 O3 H1 SING N N 30 YS2 C24 H2 SING N N 31 YS2 C24 H3 SING N N 32 YS2 C23 H4 SING N N 33 YS2 C23 H5 SING N N 34 YS2 C22 H6 SING N N 35 YS2 C22 H7 SING N N 36 YS2 C20 H8 SING N N 37 YS2 C21 H9 SING N N 38 YS2 C21 H10 SING N N 39 YS2 C21 H11 SING N N 40 YS2 C17 H12 SING N N 41 YS2 C18 H13 SING N N 42 YS2 C18 H14 SING N N 43 YS2 C18 H15 SING N N 44 YS2 C12 H16 SING N N 45 YS2 C12 H17 SING N N 46 YS2 C11 H18 SING N N 47 YS2 C11 H19 SING N N 48 YS2 C9 H20 SING N N 49 YS2 C9 H21 SING N N 50 YS2 C16 H22 SING N N 51 YS2 C16 H23 SING N N 52 YS2 C15 H24 SING N N 53 YS2 C15 H25 SING N N 54 YS2 C14 H26 SING N N 55 YS2 C7 H27 SING N N 56 YS2 C6 H28 SING N N 57 YS2 C4 H29 SING N N 58 YS2 C4 H30 SING N N 59 YS2 C10 H31 SING N N 60 YS2 C10 H32 SING N N 61 YS2 C1 H33 SING N N 62 YS2 O1 H34 SING N N 63 YS2 C28 H35 SING N N 64 YS2 C28 H36 SING N N 65 YS2 C3 H37 SING N N 66 YS2 O2 H38 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YS2 SMILES ACDLabs 12.01 "OC3C(=C)\C(O)C/C(=C\C=C1/CCCC2(C)C(C(C)CCCO)CCC12)C3" YS2 InChI InChI 1.03 "InChI=1S/C24H38O3/c1-16(6-5-13-25)20-10-11-21-19(7-4-12-24(20,21)3)9-8-18-14-22(26)17(2)23(27)15-18/h8-9,16,20-23,25-27H,2,4-7,10-15H2,1,3H3/b19-9+/t16-,20-,21+,22-,23-,24-/m1/s1" YS2 InChIKey InChI 1.03 JPGZPBYJMAWTHF-HCMYXCKPSA-N YS2 SMILES_CANONICAL CACTVS 3.370 "C[C@H](CCCO)[C@H]1CC[C@H]2C(/CCC[C@]12C)=C/C=C3C[C@@H](O)C(=C)[C@H](O)C3" YS2 SMILES CACTVS 3.370 "C[CH](CCCO)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3" YS2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CCCO)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C" YS2 SMILES "OpenEye OEToolkits" 1.7.6 "CC(CCCO)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YS2 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-[(2R)-5-hydroxypentan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" YS2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-5-oxidanylpentan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YS2 "Create component" 2012-04-23 PDBJ #