data_YTS # _chem_comp.id YTS _chem_comp.name "5-(3-{3-chloro-5-[2-(3-oxopiperazin-1-yl)ethoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 Cl N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-31 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.951 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YTS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7M90 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YTS C1 C1 C 0 1 N N N 7.753 -1.810 21.638 1.766 1.655 0.240 C1 YTS 1 YTS C2 C2 C 0 1 Y N N 8.309 -2.109 19.275 3.525 2.907 -0.743 C2 YTS 2 YTS C3 C3 C 0 1 Y N N 7.126 -2.065 18.536 3.302 3.364 -2.035 C3 YTS 3 YTS C4 C4 C 0 1 Y N N 8.049 -3.408 16.879 4.531 5.272 -1.639 C4 YTS 4 YTS C5 C5 C 0 1 Y N N 9.258 -3.477 17.563 4.791 4.887 -0.336 C5 YTS 5 YTS C6 C6 C 0 1 Y N N 9.394 -2.812 18.773 4.283 3.685 0.128 C6 YTS 6 YTS C7 C7 C 0 1 N N N 9.114 -0.260 20.538 3.714 0.546 -0.481 C7 YTS 7 YTS C8 C8 C 0 1 N N N 9.225 0.492 21.700 3.215 -0.670 -0.076 C8 YTS 8 YTS C9 C9 C 0 1 N N N 10.099 1.819 21.706 4.018 -1.904 -0.259 C9 YTS 9 YTS C11 C10 C 0 1 N N N 10.763 2.130 22.883 5.241 -2.035 0.327 C11 YTS 10 YTS C12 C11 C 0 1 N N N 11.657 4.016 21.877 5.481 -4.190 -0.613 C12 YTS 11 YTS C13 C12 C 0 1 N N N 8.572 0.080 22.857 1.938 -0.738 0.515 C13 YTS 12 YTS C14 C13 C 0 1 N N N 7.822 -1.088 22.831 1.209 0.428 0.674 C14 YTS 13 YTS C15 C14 C 0 1 Y N N 7.090 -1.553 24.118 -0.137 0.392 1.292 C15 YTS 14 YTS C16 C15 C 0 1 Y N N 6.114 -0.719 24.661 -0.284 0.016 2.626 C16 YTS 15 YTS C17 C16 C 0 1 Y N N 5.434 -1.091 25.814 -1.541 -0.016 3.200 C17 YTS 16 YTS C22 C17 C 0 1 N N N 6.498 -8.623 26.845 -6.537 -0.903 -0.495 C22 YTS 17 YTS C23 C18 C 0 1 N N N 5.249 -6.714 26.540 -6.953 0.869 -2.077 C23 YTS 18 YTS C24 C19 C 0 1 N N N 4.206 -7.508 25.665 -6.766 -0.029 -3.297 C24 YTS 19 YTS C25 C20 C 0 1 N N N 5.169 -9.365 26.841 -6.764 -1.847 -1.643 C25 YTS 20 YTS C10 C21 C 0 1 N N N 10.266 2.650 20.590 3.513 -3.018 -1.073 C10 YTS 21 YTS C18 C22 C 0 1 Y N N 5.723 -2.295 26.439 -2.655 0.324 2.453 C18 YTS 22 YTS C19 C23 C 0 1 Y N N 6.694 -3.124 25.910 -2.516 0.700 1.123 C19 YTS 23 YTS C20 C24 C 0 1 N N N 7.787 -5.330 26.142 -4.876 0.975 1.058 C20 YTS 24 YTS C21 C25 C 0 1 N N N 7.386 -6.617 26.944 -5.984 1.382 0.084 C21 YTS 25 YTS C26 C26 C 0 1 Y N N 7.386 -2.771 24.748 -1.259 0.741 0.542 C26 YTS 26 YTS N1 N1 N 0 1 N N N 8.390 -1.382 20.529 2.990 1.684 -0.320 N1 YTS 27 YTS N2 N2 N 0 1 Y N N 7.019 -2.711 17.367 3.805 4.514 -2.437 N2 YTS 28 YTS N3 N3 N 0 1 N N N 11.040 3.738 20.720 4.279 -4.120 -1.211 N3 YTS 29 YTS N4 N4 N 0 1 N N N 11.519 3.225 22.949 5.958 -3.184 0.139 N4 YTS 30 YTS N5 N5 N 0 1 N N N 6.487 -7.320 26.387 -6.069 0.394 -1.000 N5 YTS 31 YTS N6 N6 N 0 1 N N N 4.062 -8.795 26.265 -6.882 -1.431 -2.908 N6 YTS 32 YTS O1 O1 O 0 1 N N N 6.998 -3.006 21.605 1.133 2.689 0.370 O1 YTS 33 YTS O2 O2 O 0 1 N N N 9.660 2.409 19.373 2.423 -2.948 -1.611 O2 YTS 34 YTS O3 O3 O 0 1 N N N 12.452 5.162 21.965 6.153 -5.194 -0.752 O3 YTS 35 YTS O4 O4 O 0 1 N N N 6.928 -4.320 26.644 -3.612 1.034 0.394 O4 YTS 36 YTS O5 O5 O 0 1 N N N 5.070 -10.441 27.337 -6.843 -3.034 -1.411 O5 YTS 37 YTS CL1 CL1 CL 0 0 N N N 4.176 -0.041 26.523 -1.723 -0.486 4.861 CL1 YTS 38 YTS H1 H1 H 0 1 N N N 6.284 -1.502 18.912 2.712 2.770 -2.717 H1 YTS 39 YTS H2 H2 H 0 1 N N N 7.941 -3.926 15.938 4.925 6.208 -2.006 H2 YTS 40 YTS H3 H3 H 0 1 N N N 10.083 -4.043 17.156 5.387 5.514 0.310 H3 YTS 41 YTS H4 H4 H 0 1 N N N 10.328 -2.841 19.314 4.470 3.360 1.141 H4 YTS 42 YTS H5 H5 H 0 1 N N N 9.615 0.064 19.638 4.693 0.596 -0.934 H5 YTS 43 YTS H7 H6 H 0 1 N N N 10.667 1.486 23.745 5.641 -1.237 0.935 H7 YTS 44 YTS H9 H7 H 0 1 N N N 8.647 0.661 23.764 1.533 -1.686 0.838 H9 YTS 45 YTS H10 H8 H 0 1 N N N 5.885 0.222 24.183 0.583 -0.251 3.212 H10 YTS 46 YTS H16 H9 H 0 1 N N N 7.198 -9.191 26.214 -7.471 -0.764 0.049 H16 YTS 47 YTS H17 H10 H 0 1 N N N 6.867 -8.608 27.881 -5.786 -1.323 0.175 H17 YTS 48 YTS H18 H11 H 0 1 N N N 5.301 -5.669 26.202 -6.693 1.895 -2.335 H18 YTS 49 YTS H19 H12 H 0 1 N N N 4.948 -6.743 27.598 -7.991 0.826 -1.748 H19 YTS 50 YTS H20 H13 H 0 1 N N N 4.576 -7.610 24.634 -7.530 0.205 -4.038 H20 YTS 51 YTS H21 H14 H 0 1 N N N 3.239 -6.983 25.658 -5.780 0.146 -3.729 H21 YTS 52 YTS H11 H15 H 0 1 N N N 5.192 -2.583 27.334 -3.635 0.298 2.905 H11 YTS 53 YTS H12 H16 H 0 1 N N N 7.626 -5.477 25.064 -4.872 1.657 1.908 H12 YTS 54 YTS H13 H17 H 0 1 N N N 8.840 -5.071 26.324 -5.056 -0.041 1.409 H13 YTS 55 YTS H14 H18 H 0 1 N N N 8.284 -7.240 27.067 -6.936 1.423 0.613 H14 YTS 56 YTS H15 H19 H 0 1 N N N 7.017 -6.306 27.933 -5.758 2.362 -0.334 H15 YTS 57 YTS H23 H20 H 0 1 N N N 8.140 -3.428 24.340 -1.150 1.038 -0.490 H23 YTS 58 YTS H6 H21 H 0 1 N N N 11.159 4.352 19.940 3.961 -4.865 -1.744 H6 YTS 59 YTS H8 H22 H 0 1 N N N 11.985 3.457 23.803 6.828 -3.275 0.558 H8 YTS 60 YTS H22 H24 H 0 1 N N N 3.180 -9.267 26.266 -7.051 -2.091 -3.599 H22 YTS 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YTS C4 N2 DOUB Y N 1 YTS C4 C5 SING Y N 2 YTS N2 C3 SING Y N 3 YTS C5 C6 DOUB Y N 4 YTS C3 C2 DOUB Y N 5 YTS C6 C2 SING Y N 6 YTS C2 N1 SING N N 7 YTS O2 C10 DOUB N N 8 YTS N1 C7 SING N N 9 YTS N1 C1 SING N N 10 YTS C7 C8 DOUB N N 11 YTS C10 N3 SING N N 12 YTS C10 C9 SING N N 13 YTS N3 C12 SING N N 14 YTS O1 C1 DOUB N N 15 YTS C1 C14 SING N N 16 YTS C8 C9 SING N N 17 YTS C8 C13 SING N N 18 YTS C9 C11 DOUB N N 19 YTS C12 O3 DOUB N N 20 YTS C12 N4 SING N N 21 YTS C14 C13 DOUB N N 22 YTS C14 C15 SING N N 23 YTS C11 N4 SING N N 24 YTS C15 C16 DOUB Y N 25 YTS C15 C26 SING Y N 26 YTS C16 C17 SING Y N 27 YTS C26 C19 DOUB Y N 28 YTS C24 N6 SING N N 29 YTS C24 C23 SING N N 30 YTS C17 C18 DOUB Y N 31 YTS C17 CL1 SING N N 32 YTS C19 C18 SING Y N 33 YTS C19 O4 SING N N 34 YTS C20 O4 SING N N 35 YTS C20 C21 SING N N 36 YTS N6 C25 SING N N 37 YTS N5 C23 SING N N 38 YTS N5 C22 SING N N 39 YTS N5 C21 SING N N 40 YTS C25 C22 SING N N 41 YTS C25 O5 DOUB N N 42 YTS C3 H1 SING N N 43 YTS C4 H2 SING N N 44 YTS C5 H3 SING N N 45 YTS C6 H4 SING N N 46 YTS C7 H5 SING N N 47 YTS C11 H7 SING N N 48 YTS C13 H9 SING N N 49 YTS C16 H10 SING N N 50 YTS C22 H16 SING N N 51 YTS C22 H17 SING N N 52 YTS C23 H18 SING N N 53 YTS C23 H19 SING N N 54 YTS C24 H20 SING N N 55 YTS C24 H21 SING N N 56 YTS C18 H11 SING N N 57 YTS C20 H12 SING N N 58 YTS C20 H13 SING N N 59 YTS C21 H14 SING N N 60 YTS C21 H15 SING N N 61 YTS C26 H23 SING N N 62 YTS N3 H6 SING N N 63 YTS N4 H8 SING N N 64 YTS N6 H22 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YTS SMILES ACDLabs 12.01 "O=C1NC=C(C(=O)N1)C=1C=C(C(=O)N(C=1)c1cccnc1)c1cc(OCCN2CC(=O)NCC2)cc(Cl)c1" YTS InChI InChI 1.03 "InChI=1S/C26H23ClN6O5/c27-18-8-16(9-20(11-18)38-7-6-32-5-4-29-23(34)15-32)21-10-17(22-13-30-26(37)31-24(22)35)14-33(25(21)36)19-2-1-3-28-12-19/h1-3,8-14H,4-7,15H2,(H,29,34)(H2,30,31,35,37)" YTS InChIKey InChI 1.03 ROLIIXCVQCAWPI-UHFFFAOYSA-N YTS SMILES_CANONICAL CACTVS 3.385 "Clc1cc(OCCN2CCNC(=O)C2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YTS SMILES CACTVS 3.385 "Clc1cc(OCCN2CCNC(=O)C2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" YTS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)N2C=C(C=C(C2=O)c3cc(cc(c3)Cl)OCCN4CCNC(=O)C4)C5=CNC(=O)NC5=O" YTS SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cnc1)N2C=C(C=C(C2=O)c3cc(cc(c3)Cl)OCCN4CCNC(=O)C4)C5=CNC(=O)NC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YTS "SYSTEMATIC NAME" ACDLabs 12.01 "5-(3-{3-chloro-5-[2-(3-oxopiperazin-1-yl)ethoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione" YTS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[2-(3-oxidanylidenepiperazin-1-yl)ethoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YTS "Create component" 2021-03-31 RCSB YTS "Initial release" 2021-06-30 RCSB ##