data_YYD # _chem_comp.id YYD _chem_comp.name 6-amino-6-deoxy-alpha-D-glucopyranose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-17 _chem_comp.pdbx_modified_date 2023-09-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code YYD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2G5Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal YYD C1 C1 C 0 1 N N S 25.990 6.502 5.145 0.536 -1.573 -0.242 C1 YYD 1 YYD C2 C2 C 0 1 N N R 26.165 4.990 4.753 1.555 -0.474 -0.554 C2 YYD 2 YYD C3 C3 C 0 1 N N S 26.252 4.822 3.209 1.167 0.801 0.201 C3 YYD 3 YYD C4 C4 C 0 1 N N S 24.918 5.379 2.605 -0.258 1.201 -0.192 C4 YYD 4 YYD C5 C5 C 0 1 N N R 24.771 6.906 3.006 -1.207 0.037 0.106 C5 YYD 5 YYD C6 C6 C 0 1 N N N 23.476 7.529 2.486 -2.623 0.406 -0.340 C6 YYD 6 YYD N6 N6 N 0 1 N N N 23.024 8.686 3.314 -3.554 -0.660 0.054 N6 YYD 7 YYD O1 O1 O 0 1 N Y N 27.145 7.221 4.718 0.569 -1.870 1.155 O1 YYD 8 YYD O2 O2 O 0 1 N N N 27.375 4.472 5.380 2.856 -0.897 -0.141 O2 YYD 9 YYD O3 O3 O 0 1 N N N 26.405 3.480 2.917 2.070 1.854 -0.142 O3 YYD 10 YYD O4 O4 O 0 1 N N N 24.930 5.233 1.171 -0.658 2.347 0.561 O4 YYD 11 YYD O5 O5 O 0 1 N N N 24.769 7.041 4.500 -0.771 -1.125 -0.604 O5 YYD 12 YYD H1 H1 H 0 1 N N N 25.885 6.565 6.238 0.784 -2.470 -0.811 H1 YYD 13 YYD HO1 H1O H 0 1 N Y N 27.051 8.138 4.949 -0.052 -2.560 1.425 H1O YYD 14 YYD H2 H2 H 0 1 N N N 25.288 4.434 5.117 1.559 -0.275 -1.626 H2 YYD 15 YYD HO2 H2O H 0 1 N N N 27.487 3.558 5.147 3.164 -1.703 -0.576 H2O YYD 16 YYD H3 H3 H 0 1 N N N 27.094 5.419 2.828 1.211 0.616 1.274 H3 YYD 17 YYD HO3 H3O H 0 1 N N N 26.459 3.364 1.976 2.994 1.665 0.074 H3O YYD 18 YYD H4 H4 H 0 1 N N N 24.075 4.822 3.040 -0.290 1.434 -1.257 H4 YYD 19 YYD HO4 H4O H 0 1 N N N 24.119 5.572 0.811 -0.097 3.123 0.424 H4O YYD 20 YYD H5 H5 H 0 1 N N N 25.627 7.457 2.590 -1.205 -0.169 1.176 H5 YYD 21 YYD H61 H61 H 0 1 N N N 23.641 7.876 1.455 -2.921 1.341 0.133 H61 YYD 22 YYD H62 H62 H 0 1 N N N 22.688 6.761 2.493 -2.644 0.524 -1.423 H62 YYD 23 YYD H6N1 H6N1 H 0 0 N N N 22.177 9.057 2.935 -4.497 -0.440 -0.230 H6N1 YYD 24 YYD H6N2 H6N2 H 0 0 N N N 22.863 8.381 4.253 -3.263 -1.551 -0.320 H6N2 YYD 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal YYD C1 O1 SING N N 1 YYD C1 C2 SING N N 2 YYD C1 O5 SING N N 3 YYD C1 H1 SING N N 4 YYD C2 C3 SING N N 5 YYD C2 O2 SING N N 6 YYD C2 H2 SING N N 7 YYD C3 C4 SING N N 8 YYD C3 O3 SING N N 9 YYD C3 H3 SING N N 10 YYD C4 O4 SING N N 11 YYD C4 C5 SING N N 12 YYD C4 H4 SING N N 13 YYD C5 O5 SING N N 14 YYD C5 C6 SING N N 15 YYD C5 H5 SING N N 16 YYD C6 N6 SING N N 17 YYD C6 H61 SING N N 18 YYD C6 H62 SING N N 19 YYD N6 H6N1 SING N N 20 YYD N6 H6N2 SING N N 21 YYD O1 HO1 SING N N 22 YYD O2 HO2 SING N N 23 YYD O3 HO3 SING N N 24 YYD O4 HO4 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor YYD SMILES ACDLabs 12.01 "OC1C(O)C(OC(O)C1O)CN" YYD InChI InChI 1.03 "InChI=1S/C6H13NO5/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-6,8-11H,1,7H2/t2-,3-,4+,5-,6+/m1/s1" YYD InChIKey InChI 1.03 FXVPOMKTIZKCTJ-DVKNGEFBSA-N YYD SMILES_CANONICAL CACTVS 3.370 "NC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O" YYD SMILES CACTVS 3.370 "NC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" YYD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)N" YYD SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier YYD "SYSTEMATIC NAME" ACDLabs 12.01 6-amino-6-deoxy-alpha-D-glucopyranose YYD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S,5S,6R)-6-(aminomethyl)oxane-2,3,4,5-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site YYD "Create component" 2012-12-17 RCSB YYD "Modify atom id" 2013-02-04 RCSB YYD "Modify atom id" 2020-07-24 RCSB YYD "Initial release" 2023-09-27 RCSB #