data_ZD2 # _chem_comp.id ZD2 _chem_comp.name "(2S)-4-(6-amino-9H-purin-9-yl)-2-hydroxybutanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-10-13 _chem_comp.pdbx_modified_date 2016-10-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 237.215 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TLS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZD2 OXT O1 O 0 1 N N N -5.949 -2.421 43.167 -4.989 0.110 -0.942 OXT ZD2 1 ZD2 "C4'" C1 C 0 1 N N N -7.168 -2.305 43.404 -4.054 0.674 -0.425 "C4'" ZD2 2 ZD2 O O2 O 0 1 N N N -7.780 -3.163 44.061 -3.811 1.964 -0.704 O ZD2 3 ZD2 "C3'" C2 C 0 1 N N S -7.922 -1.112 42.875 -3.165 -0.069 0.539 "C3'" ZD2 4 ZD2 "O3'" O3 O 0 1 N N N -9.174 -0.968 43.555 -3.695 -1.377 0.764 "O3'" ZD2 5 ZD2 "C2'" C3 C 0 1 N N N -7.108 0.166 43.065 -1.758 -0.184 -0.051 "C2'" ZD2 6 ZD2 "C1'" C4 C 0 1 N N N -6.020 0.285 42.008 -0.825 -0.827 0.977 "C1'" ZD2 7 ZD2 N9 N1 N 0 1 Y N N -6.388 1.264 40.997 0.523 -0.936 0.413 N9 ZD2 8 ZD2 C4 C5 C 0 1 Y N N -6.549 2.563 41.217 1.487 0.040 0.417 C4 ZD2 9 ZD2 C5 C6 C 0 1 Y N N -6.906 3.150 39.931 2.603 -0.515 -0.230 C5 ZD2 10 ZD2 N7 N2 N 0 1 Y N N -6.934 2.143 39.038 2.269 -1.778 -0.589 N7 ZD2 11 ZD2 C8 C7 C 0 1 Y N N -6.615 1.004 39.699 1.051 -2.030 -0.207 C8 ZD2 12 ZD2 N3 N3 N 0 1 Y N N -6.444 3.359 42.302 1.557 1.287 0.871 N3 ZD2 13 ZD2 C2 C8 C 0 1 Y N N -6.664 4.676 42.208 2.656 1.995 0.718 C2 ZD2 14 ZD2 N1 N4 N 0 1 Y N N -7.005 5.281 41.052 3.730 1.517 0.117 N1 ZD2 15 ZD2 C6 C9 C 0 1 Y N N -7.133 4.605 39.899 3.753 0.280 -0.369 C6 ZD2 16 ZD2 N6 N5 N 0 1 N N N -7.472 5.236 38.758 4.884 -0.213 -0.998 N6 ZD2 17 ZD2 H1 H1 H 0 1 N N N -7.180 -3.854 44.317 -4.411 2.400 -1.324 H1 ZD2 18 ZD2 H2 H2 H 0 1 N N N -8.099 -1.255 41.799 -3.120 0.473 1.484 H2 ZD2 19 ZD2 H3 H3 H 0 1 N N N -9.689 -1.759 43.443 -3.763 -1.916 -0.035 H3 ZD2 20 ZD2 H4 H4 H 0 1 N N N -6.641 0.150 44.061 -1.789 -0.800 -0.949 H4 ZD2 21 ZD2 H5 H5 H 0 1 N N N -7.779 1.034 42.989 -1.388 0.810 -0.305 H5 ZD2 22 ZD2 H6 H6 H 0 1 N N N -5.876 -0.694 41.527 -0.793 -0.210 1.875 H6 ZD2 23 ZD2 H7 H7 H 0 1 N N N -5.082 0.599 42.489 -1.194 -1.820 1.232 H7 ZD2 24 ZD2 H8 H8 H 0 1 N N N -6.552 0.026 39.246 0.532 -2.963 -0.365 H8 ZD2 25 ZD2 H9 H9 H 0 1 N N N -6.564 5.281 43.097 2.681 3.006 1.099 H9 ZD2 26 ZD2 H10 H10 H 0 1 N N N -7.594 6.212 38.940 4.888 -1.117 -1.349 H10 ZD2 27 ZD2 H11 H11 H 0 1 N N N -6.747 5.111 38.080 5.671 0.346 -1.087 H11 ZD2 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZD2 N6 C6 SING N N 1 ZD2 N7 C8 DOUB Y N 2 ZD2 N7 C5 SING Y N 3 ZD2 C8 N9 SING Y N 4 ZD2 C6 C5 DOUB Y N 5 ZD2 C6 N1 SING Y N 6 ZD2 C5 C4 SING Y N 7 ZD2 N9 C4 SING Y N 8 ZD2 N9 "C1'" SING N N 9 ZD2 N1 C2 DOUB Y N 10 ZD2 C4 N3 DOUB Y N 11 ZD2 "C1'" "C2'" SING N N 12 ZD2 C2 N3 SING Y N 13 ZD2 "C3'" "C2'" SING N N 14 ZD2 "C3'" "C4'" SING N N 15 ZD2 "C3'" "O3'" SING N N 16 ZD2 OXT "C4'" DOUB N N 17 ZD2 "C4'" O SING N N 18 ZD2 O H1 SING N N 19 ZD2 "C3'" H2 SING N N 20 ZD2 "O3'" H3 SING N N 21 ZD2 "C2'" H4 SING N N 22 ZD2 "C2'" H5 SING N N 23 ZD2 "C1'" H6 SING N N 24 ZD2 "C1'" H7 SING N N 25 ZD2 C8 H8 SING N N 26 ZD2 C2 H9 SING N N 27 ZD2 N6 H10 SING N N 28 ZD2 N6 H11 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZD2 SMILES ACDLabs 12.01 "O=C(O)C(CCn2c1ncnc(c1nc2)N)O" ZD2 InChI InChI 1.03 "InChI=1S/C9H11N5O3/c10-7-6-8(12-3-11-7)14(4-13-6)2-1-5(15)9(16)17/h3-5,15H,1-2H2,(H,16,17)(H2,10,11,12)/t5-/m0/s1" ZD2 InChIKey InChI 1.03 NWPWVFAEENVVJM-YFKPBYRVSA-N ZD2 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(CC[C@H](O)C(O)=O)cnc12" ZD2 SMILES CACTVS 3.385 "Nc1ncnc2n(CC[CH](O)C(O)=O)cnc12" ZD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)CC[C@@H](C(=O)O)O)N" ZD2 SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)CCC(C(=O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZD2 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-4-(6-amino-9H-purin-9-yl)-2-hydroxybutanoic acid" ZD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-4-(6-aminopurin-9-yl)-2-oxidanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZD2 "Create component" 2016-10-13 RCSB ZD2 "Initial release" 2016-10-26 RCSB #