data_ZG9 # _chem_comp.id ZG9 _chem_comp.name "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H25 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-09 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 335.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZG9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GFB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZG9 C1 C1 C 0 1 N N N -15.750 -37.622 -65.274 -3.374 4.571 0.258 C1 ZG9 1 ZG9 O1 O1 O 0 1 N N N -15.993 -36.663 -64.224 -2.798 3.356 -0.225 O1 ZG9 2 ZG9 C2 C2 C 0 1 N N N -16.767 -35.530 -64.614 -3.398 2.175 0.313 C2 ZG9 3 ZG9 C3 C3 C 0 1 N N R -16.479 -34.364 -63.705 -2.707 0.941 -0.270 C3 ZG9 4 ZG9 O2 O2 O 0 1 N N N -15.088 -34.079 -63.888 -1.347 0.906 0.168 O2 ZG9 5 ZG9 C4 C4 C 0 1 N N R -14.623 -33.035 -63.041 -0.599 -0.200 -0.343 C4 ZG9 6 ZG9 O3 O3 O 0 1 N N N -13.273 -32.961 -63.352 0.747 -0.124 0.132 O3 ZG9 7 ZG9 C5 C5 C 0 1 N N N -12.360 -33.691 -62.486 1.471 1.010 -0.349 C5 ZG9 8 ZG9 C6 C6 C 0 1 N N S -11.423 -32.645 -61.960 2.890 0.989 0.221 C6 ZG9 9 ZG9 C7 C7 C 0 1 N N N -10.059 -32.499 -62.488 3.630 2.263 -0.200 C7 ZG9 10 ZG9 O4 O4 O 0 1 N N N -9.534 -31.251 -62.036 4.989 2.184 0.241 O4 ZG9 11 ZG9 C8 C8 C 0 1 N N N -9.544 -31.168 -60.598 5.690 1.045 -0.266 C8 ZG9 12 ZG9 C9 C9 C 0 1 N N N -10.882 -31.495 -60.016 4.951 -0.229 0.155 C9 ZG9 13 ZG9 O5 O5 O 0 1 N N N -11.385 -32.720 -60.549 3.592 -0.150 -0.287 O5 ZG9 14 ZG9 C10 C10 C 0 1 N N R -15.333 -31.696 -63.354 -1.235 -1.508 0.133 C10 ZG9 15 ZG9 N1 N1 N 0 1 N N N -14.896 -30.554 -62.554 -0.505 -2.643 -0.437 N1 ZG9 16 ZG9 C11 C11 C 0 1 N N N -14.247 -29.471 -63.022 0.597 -3.114 0.179 C11 ZG9 17 ZG9 C12 C12 C 0 1 N N N -13.821 -28.436 -62.027 1.348 -4.281 -0.407 C12 ZG9 18 ZG9 O6 O6 O 0 1 N N N -14.068 -29.307 -64.223 0.984 -2.598 1.206 O6 ZG9 19 ZG9 C13 C13 C 0 1 N N R -16.841 -31.906 -63.204 -2.695 -1.554 -0.330 C13 ZG9 20 ZG9 O7 O7 O 0 1 N N N -17.569 -30.715 -63.516 -3.318 -2.739 0.170 O7 ZG9 21 ZG9 C14 C14 C 0 1 N N S -17.306 -33.115 -64.032 -3.429 -0.322 0.208 C14 ZG9 22 ZG9 O8 O8 O 0 1 N N N -18.665 -33.432 -63.736 -4.773 -0.316 -0.277 O8 ZG9 23 ZG9 H1 H1 H 0 1 N N N -15.149 -38.454 -64.879 -2.863 5.420 -0.197 H1 ZG9 24 ZG9 H2 H2 H 0 1 N N N -16.710 -38.008 -65.647 -4.432 4.601 -0.003 H2 ZG9 25 ZG9 H3 H3 H 0 1 N N N -15.206 -37.135 -66.097 -3.265 4.620 1.341 H3 ZG9 26 ZG9 H4 H4 H 0 1 N N N -16.513 -35.255 -65.648 -3.290 2.174 1.397 H4 ZG9 27 ZG9 H5 H5 H 0 1 N N N -17.836 -35.782 -64.553 -4.457 2.155 0.053 H5 ZG9 28 ZG9 H6 H6 H 0 1 N N N -16.675 -34.659 -62.663 -2.738 0.987 -1.359 H6 ZG9 29 ZG9 H7 H7 H 0 1 N N N -14.780 -33.288 -61.982 -0.601 -0.169 -1.432 H7 ZG9 30 ZG9 H8 H8 H 0 1 N N N -12.907 -34.172 -61.662 1.515 0.977 -1.438 H8 ZG9 31 ZG9 H9 H9 H 0 1 N N N -11.810 -34.454 -63.056 0.966 1.924 -0.034 H9 ZG9 32 ZG9 H10 H10 H 0 1 N N N -11.918 -31.690 -62.190 2.846 0.935 1.308 H10 ZG9 33 ZG9 H11 H11 H 0 1 N N N -10.082 -32.516 -63.588 3.604 2.357 -1.285 H11 ZG9 34 ZG9 H12 H12 H 0 1 N N N -9.428 -33.322 -62.121 3.149 3.129 0.254 H12 ZG9 35 ZG9 H13 H13 H 0 1 N N N -8.803 -31.876 -60.198 5.734 1.099 -1.354 H13 ZG9 36 ZG9 H14 H14 H 0 1 N N N -9.271 -30.145 -60.302 6.702 1.030 0.140 H14 ZG9 37 ZG9 H15 H15 H 0 1 N N N -10.786 -31.590 -58.924 5.431 -1.095 -0.299 H15 ZG9 38 ZG9 H16 H16 H 0 1 N N N -11.586 -30.683 -60.253 4.977 -0.324 1.240 H16 ZG9 39 ZG9 H17 H17 H 0 1 N N N -15.139 -31.467 -64.412 -1.196 -1.558 1.221 H17 ZG9 40 ZG9 H18 H18 H 0 1 N N N -15.096 -30.579 -61.575 -0.815 -3.056 -1.258 H18 ZG9 41 ZG9 H19 H19 H 0 1 N N N -13.361 -27.587 -62.554 0.854 -4.608 -1.322 H19 ZG9 42 ZG9 H20 H20 H 0 1 N N N -14.699 -28.086 -61.464 2.370 -3.979 -0.633 H20 ZG9 43 ZG9 H21 H21 H 0 1 N N N -13.090 -28.875 -61.332 1.362 -5.102 0.311 H21 ZG9 44 ZG9 H22 H22 H 0 1 N N N -17.026 -32.153 -62.148 -2.733 -1.554 -1.419 H22 ZG9 45 ZG9 H23 H23 H 0 1 N N N -17.248 -29.998 -62.982 -4.246 -2.833 -0.085 H23 ZG9 46 ZG9 H24 H24 H 0 1 N N N -17.191 -32.880 -65.100 -3.435 -0.347 1.298 H24 ZG9 47 ZG9 H25 H25 H 0 1 N N N -19.214 -32.681 -63.926 -5.295 0.441 0.021 H25 ZG9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZG9 C1 O1 SING N N 1 ZG9 C2 O1 SING N N 2 ZG9 C2 C3 SING N N 3 ZG9 O6 C11 DOUB N N 4 ZG9 C14 O8 SING N N 5 ZG9 C14 C3 SING N N 6 ZG9 C14 C13 SING N N 7 ZG9 O2 C3 SING N N 8 ZG9 O2 C4 SING N N 9 ZG9 O7 C13 SING N N 10 ZG9 C10 C13 SING N N 11 ZG9 C10 C4 SING N N 12 ZG9 C10 N1 SING N N 13 ZG9 O3 C4 SING N N 14 ZG9 O3 C5 SING N N 15 ZG9 C11 N1 SING N N 16 ZG9 C11 C12 SING N N 17 ZG9 C7 O4 SING N N 18 ZG9 C7 C6 SING N N 19 ZG9 C5 C6 SING N N 20 ZG9 O4 C8 SING N N 21 ZG9 C6 O5 SING N N 22 ZG9 C8 C9 SING N N 23 ZG9 O5 C9 SING N N 24 ZG9 C1 H1 SING N N 25 ZG9 C1 H2 SING N N 26 ZG9 C1 H3 SING N N 27 ZG9 C2 H4 SING N N 28 ZG9 C2 H5 SING N N 29 ZG9 C3 H6 SING N N 30 ZG9 C4 H7 SING N N 31 ZG9 C5 H8 SING N N 32 ZG9 C5 H9 SING N N 33 ZG9 C6 H10 SING N N 34 ZG9 C7 H11 SING N N 35 ZG9 C7 H12 SING N N 36 ZG9 C8 H13 SING N N 37 ZG9 C8 H14 SING N N 38 ZG9 C9 H15 SING N N 39 ZG9 C9 H16 SING N N 40 ZG9 C10 H17 SING N N 41 ZG9 N1 H18 SING N N 42 ZG9 C12 H19 SING N N 43 ZG9 C12 H20 SING N N 44 ZG9 C12 H21 SING N N 45 ZG9 C13 H22 SING N N 46 ZG9 O7 H23 SING N N 47 ZG9 C14 H24 SING N N 48 ZG9 O8 H25 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZG9 SMILES ACDLabs 12.01 "CC(=O)NC1C(O)C(O)C(COC)OC1OCC1COCCO1" ZG9 InChI InChI 1.06 "InChI=1S/C14H25NO8/c1-8(16)15-11-13(18)12(17)10(7-19-2)23-14(11)22-6-9-5-20-3-4-21-9/h9-14,17-18H,3-7H2,1-2H3,(H,15,16)/t9-,10+,11+,12+,13+,14+/m0/s1" ZG9 InChIKey InChI 1.06 OSYFGNJAUIHPSL-YHBOFVJASA-N ZG9 SMILES_CANONICAL CACTVS 3.385 "COC[C@H]1O[C@@H](OC[C@@H]2COCCO2)[C@H](NC(C)=O)[C@@H](O)[C@@H]1O" ZG9 SMILES CACTVS 3.385 "COC[CH]1O[CH](OC[CH]2COCCO2)[CH](NC(C)=O)[CH](O)[CH]1O" ZG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC[C@@H]2COCCO2)COC)O)O" ZG9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OCC2COCCO2)COC)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZG9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside" ZG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-[[(2~{S})-1,4-dioxan-2-yl]methoxy]-6-(methoxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZG9 "Create component" 2023-03-09 RCSB ZG9 "Initial release" 2023-05-24 RCSB #