data_ZGE # _chem_comp.id ZGE _chem_comp.name "5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-3-fluoro-D-glycero-D-galacto-non-2-enonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H19 F N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2R,3R,4R)-3-acetamido-4-carbamimidamido-5-fluoranyl-2-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]-3,4-dihydro-2H-pyran-6-carb oxylic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-31 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZGE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3W09 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZGE _pdbx_chem_comp_synonyms.name ;(2R,3R,4R)-3-acetamido-4-carbamimidamido-5-fluoranyl-2-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]-3,4-dihydro-2H-pyran-6-carb oxylic acid ; _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZGE O10 O10 O 0 1 N N N N N N 27.054 14.361 62.783 -1.724 2.819 -1.289 O10 ZGE 1 ZGE C10 C10 C 0 1 N N N N N N 26.998 14.824 61.645 -1.132 3.124 -0.275 C10 ZGE 2 ZGE C11 C11 C 0 1 N N N N N N 27.574 14.080 60.462 -1.224 4.532 0.255 C11 ZGE 3 ZGE N5 N5 N 0 1 N N N N N N 26.400 15.997 61.431 -0.398 2.204 0.380 N5 ZGE 4 ZGE C5 C5 C 0 1 N N R N N N 25.754 16.754 62.543 -0.314 0.834 -0.132 C5 ZGE 5 ZGE C4 C4 C 0 1 N N R N N N 24.225 16.663 62.346 -1.502 0.015 0.383 C4 ZGE 6 ZGE N4 N4 N 0 1 N N N N N N 23.827 15.276 62.594 -2.721 0.432 -0.315 N4 ZGE 7 ZGE C12 C12 C 0 1 N N N N N N 23.715 14.311 61.621 -3.948 0.254 0.279 C12 ZGE 8 ZGE N7 N7 N 0 1 N N N N N N 23.417 13.099 61.956 -4.031 -0.314 1.528 N7 ZGE 9 ZGE N6 N6 N 0 1 N N N N N N 23.891 14.585 60.307 -5.033 0.625 -0.342 N6 ZGE 10 ZGE C3 C3 C 0 1 N N N N N N 23.476 17.733 63.151 -1.253 -1.446 0.128 C3 ZGE 11 ZGE F1 F1 F 0 1 N N N N N N 22.143 17.686 63.196 -2.297 -2.303 0.167 F1 ZGE 12 ZGE C6 C6 C 0 1 N N R N N N 26.139 18.237 62.360 0.979 0.173 0.366 C6 ZGE 13 ZGE O6 O6 O 0 1 N N N N N N 25.444 19.085 63.304 1.065 -1.135 -0.204 O6 ZGE 14 ZGE C2 C2 C 0 1 N N N N N N 24.087 18.840 63.667 -0.039 -1.923 -0.136 C2 ZGE 15 ZGE C1 C1 C 0 1 N N N N N N 23.420 19.902 64.488 0.114 -3.365 -0.364 C1 ZGE 16 ZGE O1B O1B O 0 1 N N N N N N 24.034 20.997 64.655 1.331 -3.880 -0.634 O1B ZGE 17 ZGE O1A O1A O 0 1 N N N N N N 22.262 19.764 64.957 -0.857 -4.095 -0.310 O1A ZGE 18 ZGE C7 C7 C 0 1 N N R N N N 27.639 18.547 62.522 2.185 1.006 -0.071 C7 ZGE 19 ZGE O7 O7 O 0 1 N N N N N N 27.978 18.260 63.891 2.151 1.187 -1.488 O7 ZGE 20 ZGE C8 C8 C 0 1 N N R N N N 28.023 19.998 62.277 3.474 0.281 0.320 C8 ZGE 21 ZGE O8 O8 O 0 1 N N N N N N 27.613 20.353 60.966 3.509 0.100 1.737 O8 ZGE 22 ZGE C9 C9 C 0 1 N N N N N N 29.538 20.289 62.437 4.681 1.114 -0.117 C9 ZGE 23 ZGE O9 O9 O 0 1 N N N N N N 30.330 19.470 61.544 5.882 0.385 0.142 O9 ZGE 24 ZGE H1 H1 H 0 1 N N N N N N 28.011 13.130 60.803 -1.861 5.126 -0.400 H1 ZGE 25 ZGE H2 H2 H 0 1 N N N N N N 26.776 13.876 59.733 -1.650 4.515 1.258 H2 ZGE 26 ZGE H3 H3 H 0 1 N N N N N N 28.355 14.693 59.988 -0.228 4.972 0.291 H3 ZGE 27 ZGE H4 H4 H 0 1 N N N N N N 26.384 16.377 60.506 0.075 2.448 1.191 H4 ZGE 28 ZGE H5 H5 H 0 1 N N N N N N 26.055 16.379 63.532 -0.322 0.848 -1.222 H5 ZGE 29 ZGE H6 H6 H 0 1 N N N N N N 24.033 16.876 61.284 -1.622 0.182 1.453 H6 ZGE 30 ZGE H7 H7 H 0 1 N N N N N N 23.622 15.012 63.537 -2.662 0.833 -1.196 H7 ZGE 31 ZGE H8 H8 H 0 1 N N N N N N 23.269 12.868 62.918 -3.224 -0.590 1.990 H8 ZGE 32 ZGE H9 H9 H 0 1 N N N N N N 23.334 12.392 61.254 -4.897 -0.440 1.947 H9 ZGE 33 ZGE H10 H10 H 0 1 N N N N N N 24.105 15.549 60.151 -4.974 1.026 -1.223 H10 ZGE 34 ZGE H11 H11 H 0 1 N N N N N N 25.848 18.531 61.341 0.958 0.100 1.454 H11 ZGE 35 ZGE H13 H13 H 0 1 N N N N N N 28.213 17.901 61.842 2.152 1.979 0.420 H13 ZGE 36 ZGE H14 H14 H 0 1 N N N N N N 27.754 17.359 64.091 2.177 0.361 -1.991 H14 ZGE 37 ZGE H15 H15 H 0 1 N N N N N N 27.485 20.620 63.008 3.507 -0.692 -0.171 H15 ZGE 38 ZGE H16 H16 H 0 1 N N N N N N 26.685 20.176 60.865 3.482 0.926 2.239 H16 ZGE 39 ZGE H17 H17 H 0 1 N N N N N N 29.835 20.078 63.475 4.608 1.327 -1.184 H17 ZGE 40 ZGE H18 H18 H 0 1 N N N N N N 29.725 21.349 62.211 4.697 2.051 0.440 H18 ZGE 41 ZGE H19 H19 H 0 1 N N N N N N 31.251 19.669 61.664 6.689 0.854 -0.111 H19 ZGE 42 ZGE HO1B HO1B H 0 0 N N N N N N 23.485 21.596 65.148 1.381 -4.835 -0.776 HO1B ZGE 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZGE N6 C12 DOUB N N 1 ZGE C11 C10 SING N N 2 ZGE O8 C8 SING N N 3 ZGE N5 C10 SING N N 4 ZGE N5 C5 SING N N 5 ZGE O9 C9 SING N N 6 ZGE C12 N7 SING N N 7 ZGE C12 N4 SING N N 8 ZGE C10 O10 DOUB N N 9 ZGE C8 C9 SING N N 10 ZGE C8 C7 SING N N 11 ZGE C4 C5 SING N N 12 ZGE C4 N4 SING N N 13 ZGE C4 C3 SING N N 14 ZGE C6 C7 SING N N 15 ZGE C6 C5 SING N N 16 ZGE C6 O6 SING N N 17 ZGE C7 O7 SING N N 18 ZGE C3 F1 SING N N 19 ZGE C3 C2 DOUB N N 20 ZGE O6 C2 SING N N 21 ZGE C2 C1 SING N N 22 ZGE C1 O1B SING N N 23 ZGE C1 O1A DOUB N N 24 ZGE C11 H1 SING N N 25 ZGE C11 H2 SING N N 26 ZGE C11 H3 SING N N 27 ZGE N5 H4 SING N N 28 ZGE C5 H5 SING N N 29 ZGE C4 H6 SING N N 30 ZGE N4 H7 SING N N 31 ZGE N7 H8 SING N N 32 ZGE N7 H9 SING N N 33 ZGE N6 H10 SING N N 34 ZGE C6 H11 SING N N 35 ZGE C7 H13 SING N N 36 ZGE O7 H14 SING N N 37 ZGE C8 H15 SING N N 38 ZGE O8 H16 SING N N 39 ZGE C9 H17 SING N N 40 ZGE C9 H18 SING N N 41 ZGE O9 H19 SING N N 42 ZGE O1B HO1B SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZGE SMILES ACDLabs 12.01 "O=C(C)NC1C(N/C(N)=N)C(F)=C(OC1C(O)C(CO)O)C(O)=O" ZGE InChI InChI 1.03 "InChI=1S/C12H19FN4O7/c1-3(19)16-7-6(17-12(14)15)5(13)9(11(22)23)24-10(7)8(21)4(20)2-18/h4,6-8,10,18,20-21H,2H2,1H3,(H,16,19)(H,22,23)(H4,14,15,17)/t4-,6+,7-,8-,10-/m1/s1" ZGE InChIKey InChI 1.03 UCGICVWHWQNCDB-NSNFAWTCSA-N ZGE SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](NC(N)=N)C(=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O)F" ZGE SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](NC(N)=N)C(=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O)F" ZGE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1[C@H]([C@@H](OC(=C1F)C(=O)O)[C@@H]([C@@H](CO)O)O)NC(=O)C" ZGE SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(=C(OC1C(C(CO)O)O)C(=O)O)F)NC(=N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZGE "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-3-fluoro-D-glycero-D-galacto-non-2-enonic acid" ZGE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;(2~{R},3~{R},4~{R})-3-acetamido-4-carbamimidamido-5-fluoranyl-2-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-3,4-dihydro- 2~{H}-pyran-6-carboxylic acid ; # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support ZGE "CARBOHYDRATE ISOMER" D PDB ? ZGE "CARBOHYDRATE RING" dihydropyran PDB ? ZGE "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZGE "Create component" 2012-10-31 PDBJ ZGE "Initial release" 2013-05-01 RCSB ZGE "Other modification" 2020-04-12 RCSB ZGE "Other modification" 2020-07-03 RCSB ZGE "Modify name" 2020-07-17 RCSB ZGE "Modify synonyms" 2020-07-17 RCSB ZGE "Modify component atom id" 2020-07-17 RCSB ZGE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ZGE _pdbx_chem_comp_pcm.modified_residue_id TYR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OH _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #