data_ZKO # _chem_comp.id ZKO _chem_comp.name N-SUCCINYL-GLUTAMINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H14 N2 O6" _chem_comp.mon_nstd_parent_comp_id GLN _chem_comp.pdbx_synonyms "5-azanyl-5-oxidanylidene-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.217 _chem_comp.one_letter_code Q _chem_comp.three_letter_code ZKO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZKO NE2 NE2 N 0 1 N N N N N N 4.538 -1.676 0.913 4.126 3.143 -0.400 NE2 ZKO 1 ZKO CD CD C 0 1 N N N N N N 3.739 -1.012 1.738 3.884 1.875 -0.013 CD ZKO 2 ZKO OE1 OE1 O 0 1 N N N N N N 3.641 -1.298 2.936 4.691 1.287 0.675 OE1 ZKO 3 ZKO CG CG C 0 1 N N N N N N 2.945 0.126 1.133 2.610 1.189 -0.433 CG ZKO 4 ZKO CB CB C 0 1 N N N N N N 1.730 -0.346 0.337 2.584 -0.231 0.136 CB ZKO 5 ZKO CA CA C 0 1 N N S N Y N 0.807 0.790 -0.127 1.291 -0.928 -0.292 CA ZKO 6 ZKO N N N 0 1 N N N Y Y N -0.512 0.321 -0.518 0.145 -0.247 0.316 N ZKO 7 ZKO C5 C5 C 0 1 N N N N N N -1.610 1.092 -0.634 -1.069 -0.320 -0.266 C5 ZKO 8 ZKO O2 O2 O 0 1 N N N N N N -1.592 2.306 -0.404 -1.212 -0.951 -1.291 O2 ZKO 9 ZKO C6 C6 C 0 1 N N N N N N -2.882 0.398 -1.067 -2.247 0.381 0.359 C6 ZKO 10 ZKO C7 C7 C 0 1 N N N N N N -3.584 -0.259 0.098 -3.495 0.139 -0.493 C7 ZKO 11 ZKO C8 C8 C 0 1 N N N N N N -4.917 -0.845 -0.266 -4.673 0.840 0.131 C8 ZKO 12 ZKO O3 O3 O 0 1 N N N N N N -4.827 -2.006 -0.862 -5.882 0.767 -0.448 O3 ZKO 13 ZKO O4 O4 O 0 1 N N N N N N -5.981 -0.300 -0.034 -4.530 1.469 1.153 O4 ZKO 14 ZKO C C C 0 1 N N N N Y Y 1.446 1.558 -1.281 1.320 -2.364 0.164 C ZKO 15 ZKO OXT OXT O 0 1 N Y N N Y Y 2.082 2.627 -0.872 2.289 -3.186 -0.268 OXT ZKO 16 ZKO O O O 0 1 N N N N Y Y 1.370 1.204 -2.434 0.471 -2.776 0.919 O ZKO 17 ZKO HE21 HE21 H 0 0 N N N N N N 5.088 -2.438 1.255 4.945 3.585 -0.129 HE21 ZKO 18 ZKO HE22 HE22 H 0 0 N N N N N N 4.590 -1.415 -0.051 3.482 3.613 -0.953 HE22 ZKO 19 ZKO HG2 HG2 H 0 1 N N N N N N 2.598 0.781 1.946 1.754 1.748 -0.055 HG2 ZKO 20 ZKO HG3 HG3 H 0 1 N N N N N N 3.605 0.694 0.461 2.563 1.145 -1.521 HG3 ZKO 21 ZKO HB2 HB2 H 0 1 N N N N N N 2.088 -0.886 -0.552 3.440 -0.790 -0.243 HB2 ZKO 22 ZKO HB3 HB3 H 0 1 N N N N N N 1.146 -1.029 0.971 2.631 -0.188 1.224 HB3 ZKO 23 ZKO HA HA H 0 1 N N N N Y N 0.694 1.489 0.715 1.201 -0.893 -1.377 HA ZKO 24 ZKO H H H 0 1 N N N Y Y N -0.612 -0.654 -0.717 0.260 0.258 1.136 H ZKO 25 ZKO H9 H9 H 0 1 N N N N N N -3.557 1.140 -1.518 -2.412 -0.010 1.363 H9 ZKO 26 ZKO H10 H10 H 0 1 N N N N N N -2.632 -0.371 -1.813 -2.046 1.451 0.414 H10 ZKO 27 ZKO H11 H11 H 0 1 N N N N N N -2.942 -1.065 0.483 -3.330 0.530 -1.497 H11 ZKO 28 ZKO H12 H12 H 0 1 N N N N N N -3.737 0.495 0.884 -3.696 -0.931 -0.548 H12 ZKO 29 ZKO H13 H13 H 0 1 N N N N N N -5.698 -2.325 -1.068 -6.608 1.233 -0.010 H13 ZKO 30 ZKO HXT HXT H 0 1 N Y N N Y Y 2.468 3.071 -1.618 2.266 -4.098 0.051 HXT ZKO 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZKO NE2 CD SING N N 1 ZKO CD OE1 DOUB N N 2 ZKO CD CG SING N N 3 ZKO CG CB SING N N 4 ZKO CB CA SING N N 5 ZKO CA N SING N N 6 ZKO N C5 SING N N 7 ZKO C5 O2 DOUB N N 8 ZKO C5 C6 SING N N 9 ZKO C6 C7 SING N N 10 ZKO C7 C8 SING N N 11 ZKO C8 O3 SING N N 12 ZKO C8 O4 DOUB N N 13 ZKO CA C SING N N 14 ZKO C OXT SING N N 15 ZKO C O DOUB N N 16 ZKO NE2 HE21 SING N N 17 ZKO NE2 HE22 SING N N 18 ZKO CG HG2 SING N N 19 ZKO CG HG3 SING N N 20 ZKO CB HB2 SING N N 21 ZKO CB HB3 SING N N 22 ZKO CA HA SING N N 23 ZKO N H SING N N 24 ZKO C6 H9 SING N N 25 ZKO C6 H10 SING N N 26 ZKO C7 H11 SING N N 27 ZKO C7 H12 SING N N 28 ZKO O3 H13 SING N N 29 ZKO OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZKO InChI InChI 1.06 "InChI=1S/C9H14N2O6/c10-6(12)2-1-5(9(16)17)11-7(13)3-4-8(14)15/h5H,1-4H2,(H2,10,12)(H,11,13)(H,14,15)(H,16,17)/t5-/m0/s1" ZKO InChIKey InChI 1.06 RLYZAJHMBJUMAP-YFKPBYRVSA-N ZKO SMILES_CANONICAL CACTVS 3.385 "NC(=O)CC[C@H](NC(=O)CCC(O)=O)C(O)=O" ZKO SMILES CACTVS 3.385 "NC(=O)CC[CH](NC(=O)CCC(O)=O)C(O)=O" ZKO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N)C(C(=O)O)NC(=O)CCC(=O)O" ZKO SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N)C(C(=O)O)NC(=O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id ZKO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-azanyl-5-oxidanylidene-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZKO "Create component" 2024-02-14 PDBE ZKO "Modify descriptor" 2024-02-14 PDBE ZKO "Other modification" 2024-02-14 PDBE ZKO "Initial release" 2024-04-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ZKO _pdbx_chem_comp_synonyms.name "5-azanyl-5-oxidanylidene-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]pentanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #