data_ZWH # _chem_comp.id ZWH _chem_comp.name ;[Ru2Cl(N,N'-bis(4-fluorophenyl)formamidinate)(1,1-ethanediol)(succinic acid)2] ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N2 O10 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-06 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 694.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZWH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZWH C11 C1 C 0 1 Y N N -22.848 2.137 -32.333 -22.848 2.137 -32.333 C11 ZWH 1 ZWH C21 C2 C 0 1 N N N -28.202 4.018 -23.219 -28.202 4.018 -23.219 C21 ZWH 2 ZWH O21 O1 O 0 1 N N N -28.744 5.951 -21.925 -28.744 5.951 -21.925 O21 ZWH 3 ZWH C31 C3 C 0 1 N N N -28.128 3.732 -24.712 -28.128 3.732 -24.712 C31 ZWH 4 ZWH O31 O2 O 0 1 N N N -24.723 5.077 -27.255 -24.723 5.077 -27.255 O31 ZWH 5 ZWH C41 C4 C 0 1 N N N -26.724 3.459 -25.233 -26.724 3.459 -25.233 C41 ZWH 6 ZWH O41 O3 O 0 1 N N N -23.622 4.390 -25.481 -23.622 4.390 -25.481 O41 ZWH 7 ZWH C12 C5 C 0 1 Y N N -22.475 1.116 -31.516 -22.475 1.116 -31.516 C12 ZWH 8 ZWH C22 C6 C 0 1 N N N -22.529 6.838 -24.886 -22.529 6.838 -24.886 C22 ZWH 9 ZWH O22 O4 O 0 1 N N N -20.620 8.141 -24.356 -20.620 8.141 -24.356 O22 ZWH 10 ZWH C32 C7 C 0 1 N N N -23.389 6.672 -26.118 -23.389 6.672 -26.118 C32 ZWH 11 ZWH C42 C8 C 0 1 N N N -23.951 5.275 -26.300 -23.951 5.275 -26.300 C42 ZWH 12 ZWH C13 C9 C 0 1 Y N N -22.606 1.255 -30.158 -22.606 1.255 -30.158 C13 ZWH 13 ZWH C14 C10 C 0 1 N N N -24.670 0.305 -26.197 -24.670 0.305 -26.197 C14 ZWH 14 ZWH C15 C11 C 0 1 N N N -24.348 -1.129 -26.376 -24.348 -1.129 -26.376 C15 ZWH 15 ZWH C16 C12 C 0 1 N N N -28.045 5.485 -22.854 -28.045 5.485 -22.854 C16 ZWH 16 ZWH O11 O5 O 0 1 N N N -27.217 6.165 -23.503 -27.217 6.165 -23.503 O11 ZWH 17 ZWH O3 O6 O 0 1 N N N -26.537 3.383 -26.478 -26.537 3.383 -26.478 O3 ZWH 18 ZWH O4 O7 O 0 1 N N N -25.812 3.310 -24.387 -25.812 3.310 -24.387 O4 ZWH 19 ZWH C17 C13 C 0 1 N N N -21.127 7.347 -25.169 -21.127 7.347 -25.169 C17 ZWH 20 ZWH O12 O8 O 0 1 N N N -20.549 6.947 -26.202 -20.549 6.947 -26.202 O12 ZWH 21 ZWH RU1 RU1 RU 0 0 N N N -23.872 2.840 -25.291 -23.872 2.840 -25.291 RU1 ZWH 22 ZWH RU2 RU2 RU 0 0 N N N -24.984 2.964 -27.269 -24.984 2.964 -27.269 RU2 ZWH 23 ZWH O1 O9 O 0 1 N N N -24.292 0.855 -25.130 -24.292 0.855 -25.130 O1 ZWH 24 ZWH O2 O10 O 0 1 N N N -25.282 0.951 -27.109 -25.282 0.951 -27.109 O2 ZWH 25 ZWH N1 N1 N 0 1 N N N -22.073 2.514 -26.164 -22.073 2.514 -26.164 N1 ZWH 26 ZWH N2 N2 N 0 1 N N N -23.234 2.582 -28.183 -23.234 2.582 -28.183 N2 ZWH 27 ZWH C2 C14 C 0 1 Y N N -20.896 2.181 -25.411 -20.896 2.181 -25.411 C2 ZWH 28 ZWH C3 C15 C 0 1 Y N N -20.294 3.086 -24.546 -20.294 3.086 -24.546 C3 ZWH 29 ZWH C4 C16 C 0 1 Y N N -19.170 2.786 -23.780 -19.170 2.786 -23.780 C4 ZWH 30 ZWH C7 C17 C 0 1 Y N N -20.349 0.904 -25.447 -20.349 0.904 -25.447 C7 ZWH 31 ZWH C1 C18 C 0 1 N N N -22.112 2.413 -27.478 -22.112 2.413 -27.478 C1 ZWH 32 ZWH C6 C19 C 0 1 Y N N -19.237 0.582 -24.713 -19.237 0.582 -24.713 C6 ZWH 33 ZWH C5 C20 C 0 1 Y N N -18.659 1.510 -23.894 -18.659 1.510 -23.894 C5 ZWH 34 ZWH C8 C21 C 0 1 Y N N -23.104 2.413 -29.601 -23.104 2.413 -29.601 C8 ZWH 35 ZWH C10 C22 C 0 1 Y N N -23.352 3.283 -31.823 -23.352 3.283 -31.823 C10 ZWH 36 ZWH C9 C23 C 0 1 Y N N -23.476 3.442 -30.462 -23.476 3.442 -30.462 C9 ZWH 37 ZWH H1 H1 H 0 1 N N N -22.740 2.031 -33.402 -22.740 2.031 -33.402 H1 ZWH 38 ZWH H2 H2 H 0 1 N N N -29.180 3.674 -22.851 -29.180 3.674 -22.851 H2 ZWH 39 ZWH H3 H3 H 0 1 N N N -27.402 3.451 -22.720 -27.402 3.451 -22.720 H3 ZWH 40 ZWH H4 H4 H 0 1 N N N -28.542 6.872 -21.807 -28.542 6.872 -21.807 H4 ZWH 41 ZWH H5 H5 H 0 1 N N N -28.531 4.603 -25.249 -28.531 4.603 -25.249 H5 ZWH 42 ZWH H6 H6 H 0 1 N N N -28.751 2.851 -24.924 -28.751 2.851 -24.924 H6 ZWH 43 ZWH H7 H7 H 0 1 N N N -26.523 4.540 -25.265 -26.522 4.540 -25.265 H7 ZWH 44 ZWH H8 H8 H 0 1 N N N -22.078 0.202 -31.934 -22.079 0.202 -31.934 H8 ZWH 45 ZWH H9 H9 H 0 1 N N N -23.026 7.552 -24.212 -23.026 7.552 -24.212 H9 ZWH 46 ZWH H10 H10 H 0 1 N N N -22.447 5.860 -24.388 -22.447 5.860 -24.388 H10 ZWH 47 ZWH H11 H11 H 0 1 N N N -19.748 8.381 -24.648 -19.748 8.381 -24.648 H11 ZWH 48 ZWH H12 H12 H 0 1 N N N -22.779 6.916 -27.000 -22.779 6.916 -27.000 H12 ZWH 49 ZWH H13 H13 H 0 1 N N N -24.231 7.376 -26.048 -24.231 7.376 -26.048 H13 ZWH 50 ZWH H14 H14 H 0 1 N N N -23.093 5.010 -26.935 -23.093 5.010 -26.935 H14 ZWH 51 ZWH H15 H15 H 0 1 N N N -22.313 0.441 -29.512 -22.313 0.441 -29.512 H15 ZWH 52 ZWH H16 H16 H 0 1 N N N -25.630 0.039 -25.730 -25.630 0.039 -25.730 H16 ZWH 53 ZWH H17 H17 H 0 1 N N N -23.823 -1.502 -25.484 -23.823 -1.502 -25.484 H17 ZWH 54 ZWH H18 H18 H 0 1 N N N -25.278 -1.699 -26.518 -25.278 -1.699 -26.518 H18 ZWH 55 ZWH H19 H19 H 0 1 N N N -23.704 -1.253 -27.259 -23.704 -1.253 -27.259 H19 ZWH 56 ZWH H20 H20 H 0 1 N N N -20.720 4.075 -24.463 -20.720 4.075 -24.463 H20 ZWH 57 ZWH H21 H21 H 0 1 N N N -18.719 3.519 -23.127 -18.719 3.519 -23.127 H21 ZWH 58 ZWH H22 H22 H 0 1 N N N -20.810 0.149 -26.067 -20.810 0.149 -26.067 H22 ZWH 59 ZWH H23 H23 H 0 1 N N N -21.753 1.401 -27.716 -21.753 1.401 -27.716 H23 ZWH 60 ZWH H24 H24 H 0 1 N N N -21.397 3.156 -27.862 -21.397 3.156 -27.861 H24 ZWH 61 ZWH H25 H25 H 0 1 N N N -18.816 -0.410 -24.783 -18.816 -0.410 -24.782 H25 ZWH 62 ZWH H26 H26 H 0 1 N N N -17.783 1.239 -23.323 -17.783 1.239 -23.323 H26 ZWH 63 ZWH H27 H27 H 0 1 N N N -23.659 4.078 -32.487 -23.659 4.077 -32.487 H27 ZWH 64 ZWH H28 H28 H 0 1 N N N -23.863 4.367 -30.061 -23.863 4.367 -30.061 H28 ZWH 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZWH C11 C10 DOUB Y N 1 ZWH C11 C12 SING Y N 2 ZWH C10 C9 SING Y N 3 ZWH C12 C13 DOUB Y N 4 ZWH C9 C8 DOUB Y N 5 ZWH C13 C8 SING Y N 6 ZWH C8 N2 SING N N 7 ZWH N2 C1 SING N N 8 ZWH N2 RU2 SING N N 9 ZWH C1 N1 SING N N 10 ZWH RU2 O31 SING N N 11 ZWH RU2 O2 SING N N 12 ZWH RU2 O3 SING N N 13 ZWH RU2 RU1 SING N N 14 ZWH O31 C42 SING N N 15 ZWH O2 C14 SING N N 16 ZWH O3 C41 SING N N 17 ZWH C15 C14 SING N N 18 ZWH C42 C32 SING N N 19 ZWH C42 O41 SING N N 20 ZWH O12 C17 DOUB N N 21 ZWH C14 O1 SING N N 22 ZWH N1 C2 SING N N 23 ZWH N1 RU1 SING N N 24 ZWH C32 C22 SING N N 25 ZWH O41 RU1 SING N N 26 ZWH C7 C2 DOUB Y N 27 ZWH C7 C6 SING Y N 28 ZWH C2 C3 SING Y N 29 ZWH RU1 O1 SING N N 30 ZWH RU1 O4 SING N N 31 ZWH C41 C31 SING N N 32 ZWH C41 O4 SING N N 33 ZWH C17 C22 SING N N 34 ZWH C17 O22 SING N N 35 ZWH C6 C5 DOUB Y N 36 ZWH C31 C21 SING N N 37 ZWH C3 C4 DOUB Y N 38 ZWH C5 C4 SING Y N 39 ZWH O11 C16 DOUB N N 40 ZWH C21 C16 SING N N 41 ZWH C16 O21 SING N N 42 ZWH C11 H1 SING N N 43 ZWH C21 H2 SING N N 44 ZWH C21 H3 SING N N 45 ZWH O21 H4 SING N N 46 ZWH C31 H5 SING N N 47 ZWH C31 H6 SING N N 48 ZWH C41 H7 SING N N 49 ZWH C12 H8 SING N N 50 ZWH C22 H9 SING N N 51 ZWH C22 H10 SING N N 52 ZWH O22 H11 SING N N 53 ZWH C32 H12 SING N N 54 ZWH C32 H13 SING N N 55 ZWH C42 H14 SING N N 56 ZWH C13 H15 SING N N 57 ZWH C14 H16 SING N N 58 ZWH C15 H17 SING N N 59 ZWH C15 H18 SING N N 60 ZWH C15 H19 SING N N 61 ZWH C3 H20 SING N N 62 ZWH C4 H21 SING N N 63 ZWH C7 H22 SING N N 64 ZWH C1 H23 SING N N 65 ZWH C1 H24 SING N N 66 ZWH C6 H25 SING N N 67 ZWH C5 H26 SING N N 68 ZWH C10 H27 SING N N 69 ZWH C9 H28 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZWH InChI InChI 1.06 "InChI=1S/C13H12N2.2C4H6O4.C2H4O2.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2*5-3(6)1-2-4(7)8;1-2(3)4;;/h1-10H,11H2;2*3H,1-2H2,(H,7,8);2H,1H3;;/q4*-2;2*+4" ZWH InChIKey InChI 1.06 GPMJGBXYFGQHON-UHFFFAOYSA-N ZWH SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[Ru]23O[C@H](CCC(O)=O)O[Ru](O1)(O[C@@H](CCC(O)=O)O2)N(CN3c4ccccc4)c5ccccc5" ZWH SMILES CACTVS 3.385 "C[CH]1O[Ru]23O[CH](CCC(O)=O)O[Ru](O1)(O[CH](CCC(O)=O)O2)N(CN3c4ccccc4)c5ccccc5" ZWH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]234N(CN([Ru]2(O1)(OC(O3)CCC(=O)O)OC(O4)CCC(=O)O)c5ccccc5)c6ccccc6" ZWH SMILES "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]234N(CN([Ru]2(O1)(OC(O3)CCC(=O)O)OC(O4)CCC(=O)O)c5ccccc5)c6ccccc6" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZWH "Create component" 2023-07-06 PDBE ZWH "Modify name" 2023-07-06 PDBE ZWH "Modify aromatic_flag" 2023-07-27 PDBE ZWH "Modify name" 2023-07-28 PDBE ZWH "Initial release" 2023-09-13 RCSB #