data_ZWL # _chem_comp.id ZWL _chem_comp.name "[Ru2(DPhF)(Formate)(CO3)]" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 N2 O5 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-06 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZWL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZWL N1 N1 N 0 1 N N N -24.128 -2.920 8.529 -1.345 -0.749 1.022 N1 ZWL 1 ZWL RU1 RU1 RU 0 0 N N S -23.278 -4.767 8.371 -1.285 0.993 0.222 RU1 ZWL 2 ZWL RU2 RU2 RU 0 0 N N R -21.268 -3.754 8.069 1.285 0.993 0.222 RU2 ZWL 3 ZWL O1 O1 O 0 1 N N N -22.997 -4.780 10.369 -1.299 1.148 -1.591 O1 ZWL 4 ZWL O2 O2 O 0 1 N N N -20.860 -3.927 10.042 1.299 1.148 -1.591 O2 ZWL 5 ZWL O3 O3 O 0 1 N N N -22.319 -6.602 8.284 -1.320 2.468 1.290 O3 ZWL 6 ZWL O4 O4 O 0 1 N N N -20.323 -5.591 7.961 1.320 2.468 1.290 O4 ZWL 7 ZWL N2 N2 N 0 1 N N N -22.065 -1.884 8.237 1.345 -0.750 1.022 N2 ZWL 8 ZWL C1 C1 C 0 1 N N N -21.846 -4.301 10.769 0.000 1.183 -2.004 C1 ZWL 9 ZWL C7 C2 C 0 1 N N N -23.376 -1.844 8.451 -0.000 -1.361 0.734 C7 ZWL 10 ZWL C3 C3 C 0 1 N N N -21.022 -6.665 8.112 0.000 3.088 1.134 C3 ZWL 11 ZWL O8 O5 O 0 1 N N N -21.641 -4.179 12.215 0.001 1.286 -3.214 O8 ZWL 12 ZWL C20 C4 C 0 1 Y N N -21.622 0.400 7.617 2.520 -2.850 0.840 C20 ZWL 13 ZWL C9 C5 C 0 1 Y N N -26.478 -2.801 7.799 -2.521 -2.849 0.839 C9 ZWL 14 ZWL C10 C6 C 0 1 Y N N -27.808 -2.666 8.108 -3.538 -3.607 0.292 C10 ZWL 15 ZWL C15 C7 C 0 1 Y N N -21.307 -0.706 8.405 2.372 -1.518 0.471 C15 ZWL 16 ZWL C8 C8 C 0 1 Y N N -25.552 -2.752 8.773 -2.373 -1.518 0.470 C8 ZWL 17 ZWL C13 C9 C 0 1 Y N N -25.977 -2.603 10.129 -3.249 -0.953 -0.447 C13 ZWL 18 ZWL C16 C10 C 0 1 Y N N -20.273 -0.601 9.346 3.249 -0.954 -0.447 C16 ZWL 19 ZWL C17 C11 C 0 1 Y N N -19.573 0.567 9.509 4.264 -1.717 -0.990 C17 ZWL 20 ZWL C11 C12 C 0 1 Y N N -28.231 -2.502 9.407 -4.409 -3.041 -0.621 C11 ZWL 21 ZWL C12 C13 C 0 1 Y N N -27.298 -2.488 10.445 -4.265 -1.716 -0.990 C12 ZWL 22 ZWL C18 C14 C 0 1 Y N N -19.884 1.666 8.735 4.408 -3.042 -0.621 C18 ZWL 23 ZWL C19 C15 C 0 1 Y N N -20.895 1.599 7.799 3.537 -3.607 0.292 C19 ZWL 24 ZWL H1 H1 H 0 1 N N N -23.510 -1.313 9.405 -0.000 -2.331 1.232 H1 ZWL 25 ZWL H2 H2 H 0 1 N N N -23.797 -1.241 7.633 0.000 -1.597 -0.330 H2 ZWL 26 ZWL H3 H3 H 0 1 N N N -20.854 -7.278 7.214 0.000 3.529 0.137 H3 ZWL 27 ZWL H4 H4 H 0 1 N N N -20.614 -7.184 8.992 0.000 3.948 1.803 H4 ZWL 28 ZWL H5 H5 H 0 1 N N N -22.409 0.342 6.879 1.843 -3.291 1.556 H5 ZWL 29 ZWL H6 H6 H 0 1 N N N -26.175 -2.947 6.773 -1.844 -3.290 1.556 H6 ZWL 30 ZWL H7 H7 H 0 1 N N N -28.539 -2.689 7.314 -3.654 -4.641 0.579 H7 ZWL 31 ZWL H8 H8 H 0 1 N N N -25.239 -2.581 10.917 -3.137 0.081 -0.735 H8 ZWL 32 ZWL H9 H9 H 0 1 N N N -20.023 -1.457 9.955 3.136 0.081 -0.736 H9 ZWL 33 ZWL H10 H10 H 0 1 N N N -18.781 0.626 10.241 4.945 -1.279 -1.704 H10 ZWL 34 ZWL H11 H11 H 0 1 N N N -29.283 -2.384 9.623 -5.203 -3.636 -1.048 H11 ZWL 35 ZWL H12 H12 H 0 1 N N N -27.615 -2.389 11.473 -4.946 -1.278 -1.703 H12 ZWL 36 ZWL H13 H13 H 0 1 N N N -19.332 2.585 8.863 5.202 -3.637 -1.048 H13 ZWL 37 ZWL H14 H14 H 0 1 N N N -21.133 2.467 7.202 3.652 -4.642 0.578 H14 ZWL 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZWL C20 C19 DOUB Y N 1 ZWL C20 C15 SING Y N 2 ZWL C19 C18 SING Y N 3 ZWL C9 C10 DOUB Y N 4 ZWL C9 C8 SING Y N 5 ZWL O4 RU2 SING N N 6 ZWL O4 C3 SING N N 7 ZWL RU2 N2 SING N N 8 ZWL RU2 RU1 SING N N 9 ZWL RU2 O2 SING N N 10 ZWL C10 C11 SING Y N 11 ZWL C3 O3 SING N N 12 ZWL N2 C15 SING N N 13 ZWL N2 C7 SING N N 14 ZWL O3 RU1 SING N N 15 ZWL RU1 N1 SING N N 16 ZWL RU1 O1 SING N N 17 ZWL C15 C16 DOUB Y N 18 ZWL C7 N1 SING N N 19 ZWL N1 C8 SING N N 20 ZWL C18 C17 DOUB Y N 21 ZWL C8 C13 DOUB Y N 22 ZWL C16 C17 SING Y N 23 ZWL C11 C12 DOUB Y N 24 ZWL O2 C1 SING N N 25 ZWL C13 C12 SING Y N 26 ZWL O1 C1 SING N N 27 ZWL C1 O8 DOUB N N 28 ZWL C7 H1 SING N N 29 ZWL C7 H2 SING N N 30 ZWL C3 H3 SING N N 31 ZWL C3 H4 SING N N 32 ZWL C20 H5 SING N N 33 ZWL C9 H6 SING N N 34 ZWL C10 H7 SING N N 35 ZWL C13 H8 SING N N 36 ZWL C16 H9 SING N N 37 ZWL C17 H10 SING N N 38 ZWL C11 H11 SING N N 39 ZWL C12 H12 SING N N 40 ZWL C18 H13 SING N N 41 ZWL C19 H14 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZWL InChI InChI 1.06 "InChI=1S/C13H12N2.CH2O3.CH2O2.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2-1(3)4;2-1-3;;/h1-10H,11H2;(H2,2,3,4);1H2;;/q-2;;-2;2*+3/p-2" ZWL InChIKey InChI 1.06 BRHWNNYPQHZNLT-UHFFFAOYSA-L ZWL SMILES_CANONICAL CACTVS 3.385 "O=C1O[Ru@]23OCO[Ru@@]2(O1)N(CN3c4ccccc4)c5ccccc5" ZWL SMILES CACTVS 3.385 "O=C1O[Ru]23OCO[Ru]2(O1)N(CN3c4ccccc4)c5ccccc5" ZWL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]34[Ru]2(OCO3)OC(=O)O4)c5ccccc5" ZWL SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]34[Ru]2(OCO3)OC(=O)O4)c5ccccc5" # _pdbx_chem_comp_identifier.comp_id ZWL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9,11-diphenyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecan-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZWL "Create component" 2023-07-06 PDBE ZWL "Modify name" 2023-07-07 PDBE ZWL "Initial release" 2023-09-13 RCSB #