data_ZWO # _chem_comp.id ZWO _chem_comp.name "Ru2(DPhF)(CO3)3" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H12 N2 O9 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-07 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 578.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZWO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZWO N1 N1 N 0 1 N N N -19.104 -19.066 -2.122 -1.372 1.097 -0.388 N1 ZWO 1 ZWO C5 C1 C 0 1 N N N -18.960 -15.636 -0.777 1.283 -0.771 -1.982 C5 ZWO 2 ZWO RU1 RU1 RU 0 0 N N N -19.610 -18.474 -0.222 -1.078 -0.787 -0.551 RU1 ZWO 3 ZWO RU2 RU2 RU 0 0 N N N -21.384 -17.313 -1.007 1.106 -0.767 0.561 RU2 ZWO 4 ZWO O6 O1 O 0 1 N N N -20.188 -15.669 -1.137 2.021 -1.228 -0.945 O6 ZWO 5 ZWO O1 O2 O 0 1 N N N -20.782 -20.138 -0.060 -1.649 -0.870 1.193 O1 ZWO 6 ZWO O2 O3 O 0 1 N N N -22.625 -18.904 -0.777 0.433 -0.464 2.224 O2 ZWO 7 ZWO O5 O4 O 0 1 N N N -18.468 -16.777 -0.333 0.002 -0.559 -2.013 O5 ZWO 8 ZWO O3 O5 O 0 1 N N N -20.205 -18.039 1.705 -1.185 -2.585 -0.756 O3 ZWO 9 ZWO O4 O6 O 0 1 N N N -21.874 -16.723 0.909 0.606 -2.532 0.750 O4 ZWO 10 ZWO N2 N2 N 0 1 N N N -20.880 -17.869 -2.903 1.149 1.091 0.041 N2 ZWO 11 ZWO C1 C2 C 0 1 N N N -22.039 -19.955 -0.362 -0.825 -0.966 2.188 C1 ZWO 12 ZWO C7 C3 C 0 1 N N N -19.785 -18.590 -3.132 -0.045 1.698 -0.465 C7 ZWO 13 ZWO C3 C4 C 0 1 N N N -21.132 -17.120 1.889 -0.049 -3.097 -0.237 C3 ZWO 14 ZWO O8 O7 O 0 1 N N N -22.980 -21.056 -0.324 -1.225 -1.572 3.201 O8 ZWO 15 ZWO C20 C5 C 0 1 Y N N -21.050 -16.767 -5.076 2.312 3.210 -0.241 C20 ZWO 16 ZWO C9 C6 C 0 1 Y N N -17.619 -20.980 -1.957 -2.627 3.133 -0.132 C9 ZWO 17 ZWO C10 C7 C 0 1 Y N N -16.448 -21.652 -2.212 -3.839 3.778 0.013 C10 ZWO 18 ZWO C15 C8 C 0 1 Y N N -21.617 -17.526 -4.054 2.328 1.876 0.146 C15 ZWO 19 ZWO C8 C9 C 0 1 Y N N -17.871 -19.761 -2.472 -2.587 1.748 -0.237 C8 ZWO 20 ZWO O7 O8 O 0 1 N N N -18.362 -14.544 -0.826 1.904 -0.523 -3.039 O7 ZWO 21 ZWO C13 C10 C 0 1 Y N N -16.902 -19.196 -3.370 -3.767 1.017 -0.189 C13 ZWO 22 ZWO C16 C11 C 0 1 Y N N -22.971 -17.841 -4.165 3.500 1.312 0.634 C16 ZWO 23 ZWO C17 C12 C 0 1 Y N N -23.676 -17.486 -5.289 4.644 2.079 0.734 C17 ZWO 24 ZWO C11 C13 C 0 1 Y N N -15.521 -21.116 -3.077 -5.012 3.047 0.060 C11 ZWO 25 ZWO C12 C14 C 0 1 Y N N -15.753 -19.869 -3.663 -4.976 1.669 -0.038 C12 ZWO 26 ZWO O9 O9 O 0 1 N N N -21.307 -16.624 3.016 0.403 -4.154 -0.708 O9 ZWO 27 ZWO C18 C15 C 0 1 Y N N -23.110 -16.775 -6.325 4.624 3.407 0.349 C18 ZWO 28 ZWO C19 C16 C 0 1 Y N N -21.794 -16.386 -6.210 3.461 3.970 -0.142 C19 ZWO 29 ZWO H1 H1 H 0 1 N N N -20.091 -19.450 -3.745 0.153 1.911 -1.531 H1 ZWO 30 ZWO H2 H2 H 0 1 N N N -19.098 -17.954 -3.709 -0.112 2.686 0.028 H2 ZWO 31 ZWO H3 H3 H 0 1 N N N -20.016 -16.464 -4.997 1.403 3.652 -0.622 H3 ZWO 32 ZWO H4 H4 H 0 1 N N N -18.361 -21.444 -1.324 -1.711 3.704 -0.169 H4 ZWO 33 ZWO H5 H5 H 0 1 N N N -16.255 -22.601 -1.734 -3.871 4.855 0.090 H5 ZWO 34 ZWO H6 H6 H 0 1 N N N -17.085 -18.230 -3.817 -3.740 -0.060 -0.270 H6 ZWO 35 ZWO H7 H7 H 0 1 N N N -23.468 -18.367 -3.363 3.515 0.275 0.936 H7 ZWO 36 ZWO H8 H8 H 0 1 N N N -24.714 -17.775 -5.364 5.555 1.640 1.115 H8 ZWO 37 ZWO H9 H9 H 0 1 N N N -14.615 -21.659 -3.303 -5.959 3.555 0.174 H9 ZWO 38 ZWO H10 H10 H 0 1 N N N -15.029 -19.442 -4.342 -5.894 1.101 -0.001 H10 ZWO 39 ZWO H11 H11 H 0 1 N N N -23.685 -16.529 -7.206 5.521 4.003 0.426 H11 ZWO 40 ZWO H12 H12 H 0 1 N N N -21.334 -15.792 -6.986 3.449 5.007 -0.443 H12 ZWO 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZWO C18 C19 DOUB Y N 1 ZWO C18 C17 SING Y N 2 ZWO C19 C20 SING Y N 3 ZWO C17 C16 DOUB Y N 4 ZWO C20 C15 DOUB Y N 5 ZWO C16 C15 SING Y N 6 ZWO C15 N2 SING N N 7 ZWO C12 C13 DOUB Y N 8 ZWO C12 C11 SING Y N 9 ZWO C13 C8 SING Y N 10 ZWO C7 N2 SING N N 11 ZWO C7 N1 SING N N 12 ZWO C11 C10 DOUB Y N 13 ZWO N2 RU2 SING N N 14 ZWO C8 N1 SING N N 15 ZWO C8 C9 DOUB Y N 16 ZWO C10 C9 SING Y N 17 ZWO N1 RU1 SING N N 18 ZWO O6 RU2 SING N N 19 ZWO O6 C5 SING N N 20 ZWO RU2 O2 SING N N 21 ZWO RU2 RU1 SING N N 22 ZWO RU2 O4 SING N N 23 ZWO O7 C5 DOUB N N 24 ZWO C5 O5 SING N N 25 ZWO O2 C1 SING N N 26 ZWO C1 O8 DOUB N N 27 ZWO C1 O1 SING N N 28 ZWO O5 RU1 SING N N 29 ZWO RU1 O1 SING N N 30 ZWO RU1 O3 SING N N 31 ZWO O4 C3 SING N N 32 ZWO O3 C3 SING N N 33 ZWO C3 O9 DOUB N N 34 ZWO C7 H1 SING N N 35 ZWO C7 H2 SING N N 36 ZWO C20 H3 SING N N 37 ZWO C9 H4 SING N N 38 ZWO C10 H5 SING N N 39 ZWO C13 H6 SING N N 40 ZWO C16 H7 SING N N 41 ZWO C17 H8 SING N N 42 ZWO C11 H9 SING N N 43 ZWO C12 H10 SING N N 44 ZWO C18 H11 SING N N 45 ZWO C19 H12 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZWO InChI InChI 1.06 "InChI=1S/C13H12N2.3CH2O3.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;3*2-1(3)4;;/h1-10H,11H2;3*(H2,2,3,4);;/q-2;;;;2*+4/p-6" ZWO InChIKey InChI 1.06 TZCHHEUOTVFLIC-UHFFFAOYSA-H ZWO SMILES_CANONICAL CACTVS 3.385 "O=C1O[Ru]23OC(=O)O[Ru](O1)(OC(=O)O2)N(CN3c4ccccc4)c5ccccc5" ZWO SMILES CACTVS 3.385 "O=C1O[Ru]23OC(=O)O[Ru](O1)(OC(=O)O2)N(CN3c4ccccc4)c5ccccc5" ZWO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]345[Ru]2(OC(=O)O3)(OC(=O)O4)OC(=O)O5)c6ccccc6" ZWO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]345[Ru]2(OC(=O)O3)(OC(=O)O4)OC(=O)O5)c6ccccc6" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZWO "Create component" 2023-07-07 PDBE ZWO "Modify name" 2023-07-07 PDBE ZWO "Initial release" 2023-09-13 RCSB #