data_ZXE # _chem_comp.id ZXE _chem_comp.name "Ru2(DPhF)(CO3)2(Formate) " _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H14 N2 O8 Ru2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-07 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.431 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZXE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PH6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZXE N1 N1 N 0 1 N N N -28.446 1.320 -25.131 -28.446 1.320 -25.131 N1 ZXE 1 ZXE C5 C1 C 0 1 N N N -27.060 1.787 -22.078 -27.060 1.787 -22.078 C5 ZXE 2 ZXE RU1 RU1 RU 0 0 N N N -28.379 3.163 -24.261 -28.379 3.163 -24.261 RU1 ZXE 3 ZXE RU2 RU2 RU 0 0 N N N -26.101 3.142 -24.450 -26.101 3.142 -24.450 RU2 ZXE 4 ZXE O6 O1 O 0 1 N N N -25.999 2.239 -22.644 -25.999 2.239 -22.644 O6 ZXE 5 ZXE O1 O2 O 0 1 N N N -28.588 4.122 -26.033 -28.588 4.122 -26.033 O1 ZXE 6 ZXE O2 O3 O 0 1 N N N -26.257 4.058 -26.251 -26.257 4.058 -26.251 O2 ZXE 7 ZXE O5 O4 O 0 1 N N N -28.230 2.258 -22.451 -28.230 2.258 -22.451 O5 ZXE 8 ZXE O3 O5 O 0 1 N N N -28.316 4.962 -23.292 -28.316 4.962 -23.292 O3 ZXE 9 ZXE O4 O6 O 0 1 N N N -26.029 4.959 -23.484 -26.029 4.959 -23.484 O4 ZXE 10 ZXE N2 N2 N 0 1 N N N -26.157 1.313 -25.345 -26.157 1.313 -25.345 N2 ZXE 11 ZXE C1 C2 C 0 1 N N N -27.449 4.352 -26.650 -27.449 4.352 -26.650 C1 ZXE 12 ZXE C7 C3 C 0 1 N N N -27.338 0.723 -25.489 -27.338 0.723 -25.489 C7 ZXE 13 ZXE C3 C4 C 0 1 N N N -27.143 5.521 -23.140 -27.143 5.521 -23.140 C3 ZXE 14 ZXE O8 O7 O 0 1 N N N -27.579 5.031 -27.953 -27.579 5.031 -27.953 O8 ZXE 15 ZXE C20 C5 C 0 1 Y N N -24.738 -0.657 -25.322 -24.738 -0.657 -25.322 C20 ZXE 16 ZXE C9 C6 C 0 1 Y N N -29.984 0.580 -26.874 -29.984 0.580 -26.874 C9 ZXE 17 ZXE C10 C7 C 0 1 Y N N -31.164 -0.017 -27.231 -31.164 -0.017 -27.231 C10 ZXE 18 ZXE C15 C8 C 0 1 Y N N -25.023 0.618 -25.807 -25.023 0.618 -25.807 C15 ZXE 19 ZXE C8 C9 C 0 1 Y N N -29.692 0.711 -25.561 -29.692 0.711 -25.561 C8 ZXE 20 ZXE C13 C10 C 0 1 Y N N -30.604 0.216 -24.573 -30.604 0.216 -24.573 C13 ZXE 21 ZXE C16 C11 C 0 1 Y N N -24.167 1.154 -26.768 -24.167 1.154 -26.768 C16 ZXE 22 ZXE C17 C12 C 0 1 Y N N -23.103 0.417 -27.188 -23.103 0.417 -27.188 C17 ZXE 23 ZXE C11 C13 C 0 1 Y N N -32.056 -0.497 -26.301 -32.056 -0.497 -26.301 C11 ZXE 24 ZXE C12 C14 C 0 1 Y N N -31.767 -0.380 -24.944 -31.767 -0.380 -24.944 C12 ZXE 25 ZXE O9 O8 O 0 1 N N N -27.220 6.643 -22.627 -27.220 6.643 -22.627 O9 ZXE 26 ZXE C18 C15 C 0 1 Y N N -22.797 -0.831 -26.698 -22.797 -0.831 -26.698 C18 ZXE 27 ZXE C19 C16 C 0 1 Y N N -23.622 -1.405 -25.752 -23.622 -1.405 -25.752 C19 ZXE 28 ZXE H1 H1 H 0 1 N N N -27.080 0.701 -22.250 -27.080 0.701 -22.250 H1 ZXE 29 ZXE H2 H2 H 0 1 N N N -26.961 1.986 -21.001 -26.961 1.986 -21.001 H2 ZXE 30 ZXE H3 H3 H 0 1 N N N -27.441 0.491 -26.559 -27.441 0.491 -26.559 H3 ZXE 31 ZXE H4 H4 H 0 1 N N N -27.290 -0.214 -24.914 -27.290 -0.214 -24.914 H4 ZXE 32 ZXE H5 H5 H 0 1 N N N -25.399 -1.091 -24.586 -25.399 -1.090 -24.586 H5 ZXE 33 ZXE H6 H6 H 0 1 N N N -29.299 0.939 -27.628 -29.299 0.939 -27.628 H6 ZXE 34 ZXE H7 H7 H 0 1 N N N -31.402 -0.114 -28.280 -31.402 -0.114 -28.280 H7 ZXE 35 ZXE H8 H8 H 0 1 N N N -30.365 0.318 -23.525 -30.365 0.317 -23.525 H8 ZXE 36 ZXE H9 H9 H 0 1 N N N -24.346 2.139 -27.173 -24.346 2.139 -27.173 H9 ZXE 37 ZXE H10 H10 H 0 1 N N N -22.462 0.836 -27.950 -22.462 0.836 -27.950 H10 ZXE 38 ZXE H11 H11 H 0 1 N N N -32.976 -0.962 -26.622 -32.976 -0.962 -26.622 H11 ZXE 39 ZXE H12 H12 H 0 1 N N N -32.454 -0.756 -24.201 -32.454 -0.756 -24.201 H12 ZXE 40 ZXE H13 H13 H 0 1 N N N -21.921 -1.356 -27.049 -21.921 -1.356 -27.049 H13 ZXE 41 ZXE H14 H14 H 0 1 N N N -23.421 -2.389 -25.356 -23.421 -2.389 -25.356 H14 ZXE 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZXE O8 C1 DOUB N N 1 ZXE C10 C9 DOUB Y N 2 ZXE C10 C11 SING Y N 3 ZXE C17 C16 DOUB Y N 4 ZXE C17 C18 SING Y N 5 ZXE C9 C8 SING Y N 6 ZXE C16 C15 SING Y N 7 ZXE C18 C19 DOUB Y N 8 ZXE C1 O2 SING N N 9 ZXE C1 O1 SING N N 10 ZXE C11 C12 DOUB Y N 11 ZXE O2 RU2 SING N N 12 ZXE O1 RU1 SING N N 13 ZXE C15 N2 SING N N 14 ZXE C15 C20 DOUB Y N 15 ZXE C19 C20 SING Y N 16 ZXE C8 N1 SING N N 17 ZXE C8 C13 DOUB Y N 18 ZXE C7 N2 SING N N 19 ZXE C7 N1 SING N N 20 ZXE N2 RU2 SING N N 21 ZXE N1 RU1 SING N N 22 ZXE C12 C13 SING Y N 23 ZXE RU2 RU1 SING N N 24 ZXE RU2 O4 SING N N 25 ZXE RU2 O6 SING N N 26 ZXE RU1 O3 SING N N 27 ZXE RU1 O5 SING N N 28 ZXE O4 C3 SING N N 29 ZXE O3 C3 SING N N 30 ZXE C3 O9 DOUB N N 31 ZXE O6 C5 SING N N 32 ZXE O5 C5 SING N N 33 ZXE C5 H1 SING N N 34 ZXE C5 H2 SING N N 35 ZXE C7 H3 SING N N 36 ZXE C7 H4 SING N N 37 ZXE C20 H5 SING N N 38 ZXE C9 H6 SING N N 39 ZXE C10 H7 SING N N 40 ZXE C13 H8 SING N N 41 ZXE C16 H9 SING N N 42 ZXE C17 H10 SING N N 43 ZXE C11 H11 SING N N 44 ZXE C12 H12 SING N N 45 ZXE C18 H13 SING N N 46 ZXE C19 H14 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZXE InChI InChI 1.06 "InChI=1S/C13H12N2.2CH2O3.CH2O2.2Ru/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;2*2-1(3)4;2-1-3;;/h1-10H,11H2;2*(H2,2,3,4);1H2;;/q-2;;;-2;2*+4/p-4" ZXE InChIKey InChI 1.06 VXNQBXDONZSVPB-UHFFFAOYSA-J ZXE SMILES_CANONICAL CACTVS 3.385 "O=C1O[Ru]23OCO[Ru](O1)(OC(=O)O2)N(CN3c4ccccc4)c5ccccc5" ZXE SMILES CACTVS 3.385 "O=C1O[Ru]23OCO[Ru](O1)(OC(=O)O2)N(CN3c4ccccc4)c5ccccc5" ZXE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]345[Ru]2(OCO3)(OC(=O)O4)OC(=O)O5)c6ccccc6" ZXE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]345[Ru]2(OCO3)(OC(=O)O4)OC(=O)O5)c6ccccc6" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZXE "Create component" 2023-07-07 PDBE ZXE "Initial release" 2023-09-13 RCSB #