data_ZXN # _chem_comp.id ZXN _chem_comp.name "[6-methyl-5-oxidanyl-4-[(2-phenylhydrazinyl)methyl]pyridin-3-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-10 _chem_comp.pdbx_modified_date 2023-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZXN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PNY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZXN N N1 N 0 1 N N N N N N -47.963 7.217 -22.422 -2.037 -0.236 -0.007 N ZXN 1 ZXN C6 C1 C 0 1 Y N N N N N -52.481 7.381 -21.287 2.172 2.068 -0.009 C6 ZXN 2 ZXN C5 C2 C 0 1 Y N N N N N -51.246 7.845 -20.894 1.461 0.886 -0.012 C5 ZXN 3 ZXN C4 C3 C 0 1 Y N N N N N -50.311 7.507 -21.941 0.062 0.934 -0.007 C4 ZXN 4 ZXN C3 C4 C 0 1 Y N N N N N -50.716 6.858 -23.161 -0.557 2.197 0.000 C3 ZXN 5 ZXN C2 C5 C 0 1 Y N N N N N -52.043 6.500 -23.348 0.237 3.330 0.003 C2 ZXN 6 ZXN N1 N2 N 0 1 Y N N N N N -52.894 6.756 -22.395 1.553 3.233 0.004 N1 ZXN 7 ZXN C2A C6 C 0 1 N N N N N N -52.580 5.793 -24.543 -0.408 4.691 0.011 C2A ZXN 8 ZXN O3 O1 O 0 1 N N N N N N -49.667 6.679 -24.015 -1.912 2.302 0.005 O3 ZXN 9 ZXN C4A C7 C 0 1 N N N N N N -48.919 7.912 -21.942 -0.739 -0.302 -0.011 C4A ZXN 10 ZXN C5A C8 C 0 1 N N N N N N -51.397 8.437 -19.526 2.181 -0.438 -0.021 C5A ZXN 11 ZXN O4P O2 O 0 1 N N N N N N -50.371 7.856 -18.654 3.592 -0.214 -0.025 O4P ZXN 12 ZXN P P1 P 0 1 N N N N N N -49.262 8.315 -17.545 4.670 -1.410 -0.035 P ZXN 13 ZXN O1P O3 O 0 1 N N N N N N -48.193 8.961 -18.369 4.402 -2.307 -1.181 O1P ZXN 14 ZXN O2P O4 O 0 1 N N N N N N -48.709 7.086 -16.833 6.152 -0.795 -0.169 O2P ZXN 15 ZXN O3P O5 O 0 1 N N N N N N -49.996 9.252 -16.582 4.558 -2.244 1.337 O3P ZXN 16 ZXN "N'" N3 N 0 1 N N N N N N -46.728 7.784 -22.268 -2.798 -1.412 -0.010 "N'" ZXN 17 ZXN CG C9 C 0 1 Y N N N N N -46.065 8.293 -23.380 -4.192 -1.340 -0.005 CG ZXN 18 ZXN CD2 C10 C 0 1 Y N N N N N -46.622 8.087 -24.636 -4.826 -0.103 -0.003 CD2 ZXN 19 ZXN CE2 C11 C 0 1 Y N N N N N -45.970 8.568 -25.756 -6.205 -0.037 -0.004 CE2 ZXN 20 ZXN CZ C12 C 0 1 Y N N N N N -44.784 9.251 -25.634 -6.956 -1.199 -0.006 CZ ZXN 21 ZXN CE1 C13 C 0 1 Y N N N N N -44.232 9.460 -24.395 -6.328 -2.431 -0.009 CE1 ZXN 22 ZXN CD1 C14 C 0 1 Y N N N N N -44.871 8.993 -23.259 -4.949 -2.506 -0.008 CD1 ZXN 23 ZXN H2 H2 H 0 1 N N N N N N -53.264 7.554 -20.564 3.251 2.039 -0.013 H2 ZXN 24 ZXN H3 H3 H 0 1 N N N N N N -53.654 5.602 -24.404 -0.561 5.015 1.040 H3 ZXN 25 ZXN H4 H4 H 0 1 N N N N N N -52.431 6.418 -25.436 0.238 5.403 -0.502 H4 ZXN 26 ZXN H5 H5 H 0 1 N N N N N N -52.051 4.837 -24.672 -1.370 4.640 -0.501 H5 ZXN 27 ZXN H6 H6 H 0 1 N N N N N N -48.874 7.023 -23.620 -2.301 2.329 0.889 H6 ZXN 28 ZXN H7 H7 H 0 1 N N N N N N -48.674 8.869 -21.506 -0.248 -1.264 -0.017 H7 ZXN 29 ZXN H9 H9 H 0 1 N N N N N N -51.267 9.528 -19.577 1.906 -1.007 0.867 H9 ZXN 30 ZXN H10 H10 H 0 1 N N N N N N -52.396 8.205 -19.129 1.899 -0.999 -0.913 H10 ZXN 31 ZXN H11 H11 H 0 1 N N N N N N -47.792 6.976 -17.056 6.854 -1.460 -0.182 H11 ZXN 32 ZXN H12 H12 H 0 1 N N N N N N -49.643 10.130 -16.663 4.722 -1.719 2.132 H12 ZXN 33 ZXN H13 H13 H 0 1 N N N N N N -46.305 7.832 -21.363 -2.357 -2.276 -0.016 H13 ZXN 34 ZXN H14 H14 H 0 1 N N N N N N -47.557 7.555 -24.736 -4.241 0.804 0.000 H14 ZXN 35 ZXN H15 H15 H 0 1 N N N N N N -46.396 8.406 -26.735 -6.699 0.924 -0.002 H15 ZXN 36 ZXN H16 H16 H 0 1 N N N N N N -44.285 9.625 -26.516 -8.034 -1.143 -0.006 H16 ZXN 37 ZXN H17 H17 H 0 1 N N N N N N -43.296 9.991 -24.306 -6.917 -3.336 -0.011 H17 ZXN 38 ZXN H18 H18 H 0 1 N N N N N N -44.443 9.172 -22.284 -4.460 -3.468 -0.014 H18 ZXN 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZXN CE2 CZ DOUB Y N 1 ZXN CE2 CD2 SING Y N 2 ZXN CZ CE1 SING Y N 3 ZXN CD2 CG DOUB Y N 4 ZXN C2A C2 SING N N 5 ZXN CE1 CD1 DOUB Y N 6 ZXN O3 C3 SING N N 7 ZXN CG CD1 SING Y N 8 ZXN CG "N'" SING N N 9 ZXN C2 C3 DOUB Y N 10 ZXN C2 N1 SING Y N 11 ZXN C3 C4 SING Y N 12 ZXN N "N'" SING N N 13 ZXN N C4A DOUB N E 14 ZXN N1 C6 DOUB Y N 15 ZXN C4A C4 SING N N 16 ZXN C4 C5 DOUB Y N 17 ZXN C6 C5 SING Y N 18 ZXN C5 C5A SING N N 19 ZXN C5A O4P SING N N 20 ZXN O4P P SING N N 21 ZXN O1P P DOUB N N 22 ZXN P O2P SING N N 23 ZXN P O3P SING N N 24 ZXN C6 H2 SING N N 25 ZXN C2A H3 SING N N 26 ZXN C2A H4 SING N N 27 ZXN C2A H5 SING N N 28 ZXN O3 H6 SING N N 29 ZXN C4A H7 SING N N 30 ZXN C5A H9 SING N N 31 ZXN C5A H10 SING N N 32 ZXN O2P H11 SING N N 33 ZXN O3P H12 SING N N 34 ZXN "N'" H13 SING N N 35 ZXN CD2 H14 SING N N 36 ZXN CE2 H15 SING N N 37 ZXN CZ H16 SING N N 38 ZXN CE1 H17 SING N N 39 ZXN CD1 H18 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZXN InChI InChI 1.06 "InChI=1S/C14H16N3O5P/c1-10-14(18)13(8-16-17-12-5-3-2-4-6-12)11(7-15-10)9-22-23(19,20)21/h2-8,17-18H,9H2,1H3,(H2,19,20,21)/b16-8+" ZXN InChIKey InChI 1.06 VZZGBIJWEDOPQL-LZYBPNLTSA-N ZXN SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(/C=N/Nc2ccccc2)c1O" ZXN SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NNc2ccccc2)c1O" ZXN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/Nc2ccccc2)O" ZXN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NNc2ccccc2)O" # _pdbx_chem_comp_identifier.comp_id ZXN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[6-methyl-5-oxidanyl-4-[(~{E})-(phenylhydrazinylidene)methyl]pyridin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZXN "Create component" 2023-07-10 PDBE ZXN "Initial release" 2023-10-25 RCSB ZXN "Modify formula" 2023-12-06 PDBE #