data_ZZ9 # _chem_comp.id ZZ9 _chem_comp.name "5'-O-[(S)-hydroxy{[(1R)-1-hydroxyundecyl]oxy}phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H36 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ZZ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3GQW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ZZ9 CAA CAA C 0 1 N N N 8.223 51.457 63.117 14.960 -1.737 -0.707 CAA ZZ9 1 ZZ9 CAJ CAJ C 0 1 N N N 6.989 51.664 63.942 13.581 -1.715 -1.370 CAJ ZZ9 2 ZZ9 CAK CAK C 0 1 N N N 5.761 52.106 63.163 12.534 -1.252 -0.356 CAK ZZ9 3 ZZ9 CAL CAL C 0 1 N N N 4.514 52.125 64.025 11.156 -1.231 -1.019 CAL ZZ9 4 ZZ9 CAM CAM C 0 1 N N N 3.236 52.273 63.254 10.108 -0.767 -0.004 CAM ZZ9 5 ZZ9 CAN CAN C 0 1 N N N 2.065 52.098 64.182 8.730 -0.746 -0.668 CAN ZZ9 6 ZZ9 CAO CAO C 0 1 N N N 1.108 53.253 64.328 7.683 -0.282 0.347 CAO ZZ9 7 ZZ9 CAP CAP C 0 1 N N N 0.010 52.847 65.265 6.304 -0.261 -0.317 CAP ZZ9 8 ZZ9 CAQ CAQ C 0 1 N N N 0.130 53.405 66.660 5.257 0.203 0.698 CAQ ZZ9 9 ZZ9 CAR CAR C 0 1 N N N -0.328 52.449 67.739 3.879 0.224 0.035 CAR ZZ9 10 ZZ9 CAZ CAZ C 0 1 N N R -1.462 53.068 68.501 2.831 0.687 1.049 CAZ ZZ9 11 ZZ9 OAC OAC O 0 1 N N N -1.205 54.407 68.241 2.730 -0.274 2.102 OAC ZZ9 12 ZZ9 OAX OAX O 0 1 N N N -1.385 52.785 69.906 1.565 0.819 0.400 OAX ZZ9 13 ZZ9 PBI PBI P 0 1 N N S -2.528 52.721 71.010 0.448 1.881 0.866 PBI ZZ9 14 ZZ9 OAG OAG O 0 1 N N N -1.875 53.338 72.111 0.999 3.376 0.635 OAG ZZ9 15 ZZ9 OAD OAD O 0 1 N N N -3.002 51.421 71.328 0.146 1.683 2.301 OAD ZZ9 16 ZZ9 "O5'" O5* O 0 1 N N N -3.751 53.538 70.520 -0.892 1.664 0.000 O5* ZZ9 17 ZZ9 "C5'" C5* C 0 1 N N N -4.610 52.947 69.571 -2.103 2.383 0.246 C5* ZZ9 18 ZZ9 "C4'" C4* C 0 1 N N R -5.814 53.761 69.142 -3.173 1.936 -0.752 C4* ZZ9 19 ZZ9 "O4'" O4* O 0 1 N N N -5.367 54.959 68.602 -3.529 0.565 -0.505 O4* ZZ9 20 ZZ9 "C3'" C3* C 0 1 N N S -6.589 53.162 68.011 -4.448 2.780 -0.566 C3* ZZ9 21 ZZ9 "O3'" O3* O 0 1 N N N -7.756 52.449 68.365 -4.761 3.486 -1.768 O3* ZZ9 22 ZZ9 "C2'" C2* C 0 1 N N R -7.146 54.353 67.341 -5.549 1.740 -0.246 C2* ZZ9 23 ZZ9 "O2'" O2* O 0 1 N N N -8.403 54.613 67.933 -6.767 2.062 -0.920 O2* ZZ9 24 ZZ9 "C1'" C1* C 0 1 N N R -6.189 55.452 67.587 -4.934 0.433 -0.808 C1* ZZ9 25 ZZ9 N9 N9 N 0 1 Y N N -5.375 55.586 66.362 -5.500 -0.736 -0.132 N9 ZZ9 26 ZZ9 C8 C8 C 0 1 Y N N -4.203 55.028 66.218 -5.009 -1.335 0.990 C8 ZZ9 27 ZZ9 N7 N7 N 0 1 Y N N -3.706 55.297 65.036 -5.759 -2.347 1.318 N7 ZZ9 28 ZZ9 C5 C5 C 0 1 Y N N -4.590 56.046 64.419 -6.776 -2.461 0.431 C5 ZZ9 29 ZZ9 C4 C4 C 0 1 Y N N -5.639 56.226 65.241 -6.626 -1.426 -0.507 C4 ZZ9 30 ZZ9 N3 N3 N 0 1 Y N N -6.668 56.964 64.821 -7.511 -1.312 -1.492 N3 ZZ9 31 ZZ9 C2 C2 C 0 1 Y N N -6.754 57.586 63.518 -8.517 -2.155 -1.589 C2 ZZ9 32 ZZ9 N1 N1 N 0 1 Y N N -5.615 57.363 62.698 -8.702 -3.141 -0.731 N1 ZZ9 33 ZZ9 C6 C6 C 0 1 Y N N -4.588 56.657 63.099 -7.864 -3.338 0.282 C6 ZZ9 34 ZZ9 N6 N6 N 0 1 N N N -3.537 56.490 62.276 -8.067 -4.374 1.177 N6 ZZ9 35 ZZ9 HAA HAA H 0 1 N N N 7.949 51.406 62.053 15.211 -0.735 -0.358 HAA ZZ9 36 ZZ9 HAAA HAAA H 0 0 N N N 8.916 52.296 63.277 14.945 -2.424 0.139 HAAA ZZ9 37 ZZ9 HAAB HAAB H 0 0 N N N 8.710 50.517 63.415 15.706 -2.067 -1.430 HAAB ZZ9 38 ZZ9 HAJ HAJ H 0 1 N N N 6.749 50.707 64.429 13.596 -1.029 -2.217 HAJ ZZ9 39 ZZ9 HAJA HAJA H 0 0 N N N 7.219 52.477 64.646 13.330 -2.717 -1.720 HAJA ZZ9 40 ZZ9 HAK HAK H 0 1 N N N 5.937 53.121 62.778 12.519 -1.939 0.490 HAK ZZ9 41 ZZ9 HAKA HAKA H 0 0 N N N 5.599 51.386 62.347 12.785 -0.250 -0.007 HAKA ZZ9 42 ZZ9 HAL HAL H 0 1 N N N 4.469 51.174 64.576 11.170 -0.544 -1.865 HAL ZZ9 43 ZZ9 HALA HALA H 0 0 N N N 4.594 53.004 64.682 10.905 -2.232 -1.368 HALA ZZ9 44 ZZ9 HAM HAM H 0 1 N N N 3.196 53.274 62.799 10.094 -1.454 0.842 HAM ZZ9 45 ZZ9 HAMA HAMA H 0 0 N N N 3.194 51.508 62.464 10.359 0.234 0.345 HAMA ZZ9 46 ZZ9 HAN HAN H 0 1 N N N 1.481 51.247 63.801 8.745 -0.059 -1.514 HAN ZZ9 47 ZZ9 HANA HANA H 0 0 N N N 2.511 51.972 65.180 8.479 -1.747 -1.017 HANA ZZ9 48 ZZ9 HAO HAO H 0 1 N N N 1.639 54.127 64.733 7.668 -0.969 1.193 HAO ZZ9 49 ZZ9 HAOA HAOA H 0 0 N N N 0.686 53.518 63.347 7.934 0.719 0.696 HAOA ZZ9 50 ZZ9 HAP HAP H 0 1 N N N -0.940 53.204 64.842 6.319 0.426 -1.163 HAP ZZ9 51 ZZ9 HAPA HAPA H 0 0 N N N 0.069 51.753 65.360 6.054 -1.263 -0.666 HAPA ZZ9 52 ZZ9 HAQ HAQ H 0 1 N N N 1.188 53.644 66.842 5.242 -0.484 1.544 HAQ ZZ9 53 ZZ9 HAQA HAQA H 0 0 N N N -0.523 54.289 66.712 5.508 1.204 1.047 HAQA ZZ9 54 ZZ9 HAR HAR H 0 1 N N N -0.665 51.509 67.278 3.893 0.911 -0.812 HAR ZZ9 55 ZZ9 HARA HARA H 0 0 N N N 0.506 52.241 68.425 3.628 -0.778 -0.315 HARA ZZ9 56 ZZ9 HAZ HAZ H 0 1 N N N -2.463 52.711 68.216 3.129 1.650 1.465 HAZ ZZ9 57 ZZ9 "H5'" H5* H 0 1 N N N -4.012 52.754 68.669 -2.445 2.181 1.261 H5* ZZ9 58 ZZ9 "H5'A" H5*A H 0 0 N N N -5.021 52.053 70.064 -1.921 3.451 0.129 H5*A ZZ9 59 ZZ9 "H4'" H4* H 0 1 N N N -6.440 53.839 70.043 -2.799 2.045 -1.770 H4* ZZ9 60 ZZ9 "H3'" H3* H 0 1 N N N -5.920 52.476 67.472 -4.327 3.477 0.264 H3* ZZ9 61 ZZ9 "HO3'" HO3* H 0 0 N N N -7.758 52.289 69.301 -5.555 4.034 -1.708 HO3* ZZ9 62 ZZ9 "H2'" H2* H 0 1 N N N -7.288 54.227 66.257 -5.711 1.663 0.830 H2* ZZ9 63 ZZ9 "HO2'" HO2* H 0 0 N N N -8.303 54.671 68.876 -7.143 2.916 -0.667 HO2* ZZ9 64 ZZ9 "H1'" H1* H 0 1 N N N -6.659 56.413 67.844 -5.090 0.368 -1.885 H1* ZZ9 65 ZZ9 H8 H8 H 0 1 N N N -3.711 54.428 66.969 -4.128 -1.018 1.527 H8 ZZ9 66 ZZ9 H2 H2 H 0 1 N N N -7.606 58.167 63.197 -9.219 -2.034 -2.401 H2 ZZ9 67 ZZ9 HN6 HN6 H 0 1 N N N -3.857 56.449 61.330 -7.454 -4.501 1.918 HN6 ZZ9 68 ZZ9 HN6A HN6A H 0 0 N N N -2.906 57.259 62.381 -8.821 -4.972 1.063 HN6A ZZ9 69 ZZ9 H35 H35 H 0 1 N N N -1.146 54.884 69.061 2.468 -1.156 1.804 H35 ZZ9 70 ZZ9 H36 H36 H 0 1 N N N -0.959 53.476 71.900 1.218 3.577 -0.285 H36 ZZ9 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ZZ9 CAA CAJ SING N N 1 ZZ9 CAA HAA SING N N 2 ZZ9 CAA HAAA SING N N 3 ZZ9 CAA HAAB SING N N 4 ZZ9 CAJ CAK SING N N 5 ZZ9 CAJ HAJ SING N N 6 ZZ9 CAJ HAJA SING N N 7 ZZ9 CAK CAL SING N N 8 ZZ9 CAK HAK SING N N 9 ZZ9 CAK HAKA SING N N 10 ZZ9 CAL CAM SING N N 11 ZZ9 CAL HAL SING N N 12 ZZ9 CAL HALA SING N N 13 ZZ9 CAM CAN SING N N 14 ZZ9 CAM HAM SING N N 15 ZZ9 CAM HAMA SING N N 16 ZZ9 CAN CAO SING N N 17 ZZ9 CAN HAN SING N N 18 ZZ9 CAN HANA SING N N 19 ZZ9 CAO CAP SING N N 20 ZZ9 CAO HAO SING N N 21 ZZ9 CAO HAOA SING N N 22 ZZ9 CAP CAQ SING N N 23 ZZ9 CAP HAP SING N N 24 ZZ9 CAP HAPA SING N N 25 ZZ9 CAQ CAR SING N N 26 ZZ9 CAQ HAQ SING N N 27 ZZ9 CAQ HAQA SING N N 28 ZZ9 CAR CAZ SING N N 29 ZZ9 CAR HAR SING N N 30 ZZ9 CAR HARA SING N N 31 ZZ9 CAZ OAC SING N N 32 ZZ9 CAZ OAX SING N N 33 ZZ9 CAZ HAZ SING N N 34 ZZ9 OAX PBI SING N N 35 ZZ9 PBI OAG SING N N 36 ZZ9 PBI OAD DOUB N N 37 ZZ9 PBI "O5'" SING N N 38 ZZ9 "O5'" "C5'" SING N N 39 ZZ9 "C5'" "C4'" SING N N 40 ZZ9 "C5'" "H5'" SING N N 41 ZZ9 "C5'" "H5'A" SING N N 42 ZZ9 "C4'" "O4'" SING N N 43 ZZ9 "C4'" "C3'" SING N N 44 ZZ9 "C4'" "H4'" SING N N 45 ZZ9 "O4'" "C1'" SING N N 46 ZZ9 "C3'" "O3'" SING N N 47 ZZ9 "C3'" "C2'" SING N N 48 ZZ9 "C3'" "H3'" SING N N 49 ZZ9 "O3'" "HO3'" SING N N 50 ZZ9 "C2'" "O2'" SING N N 51 ZZ9 "C2'" "C1'" SING N N 52 ZZ9 "C2'" "H2'" SING N N 53 ZZ9 "O2'" "HO2'" SING N N 54 ZZ9 "C1'" N9 SING N N 55 ZZ9 "C1'" "H1'" SING N N 56 ZZ9 N9 C8 SING Y N 57 ZZ9 N9 C4 SING Y N 58 ZZ9 C8 N7 DOUB Y N 59 ZZ9 C8 H8 SING N N 60 ZZ9 N7 C5 SING Y N 61 ZZ9 C5 C4 DOUB Y N 62 ZZ9 C5 C6 SING Y N 63 ZZ9 C4 N3 SING Y N 64 ZZ9 N3 C2 DOUB Y N 65 ZZ9 C2 N1 SING Y N 66 ZZ9 C2 H2 SING N N 67 ZZ9 N1 C6 DOUB Y N 68 ZZ9 C6 N6 SING N N 69 ZZ9 N6 HN6 SING N N 70 ZZ9 N6 HN6A SING N N 71 ZZ9 OAC H35 SING N N 72 ZZ9 OAG H36 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ZZ9 SMILES ACDLabs 10.04 "O=P(O)(OC(O)CCCCCCCCCC)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" ZZ9 SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCC[C@H](O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" ZZ9 SMILES CACTVS 3.341 "CCCCCCCCCC[CH](O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" ZZ9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC[C@H](O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" ZZ9 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCC(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" ZZ9 InChI InChI 1.03 "InChI=1S/C21H36N5O8P/c1-2-3-4-5-6-7-8-9-10-15(27)34-35(30,31)32-11-14-17(28)18(29)21(33-14)26-13-25-16-19(22)23-12-24-20(16)26/h12-15,17-18,21,27-29H,2-11H2,1H3,(H,30,31)(H2,22,23,24)/t14-,15-,17-,18-,21-/m1/s1" ZZ9 InChIKey InChI 1.03 DGBHISUNYLJTLF-SQDDPSDBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ZZ9 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(1R)-1-hydroxyundecyl]oxy}phosphoryl]adenosine" ZZ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [(1R)-1-hydroxyundecyl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ZZ9 "Create component" 2009-05-19 RCSB ZZ9 "Modify aromatic_flag" 2011-06-04 RCSB ZZ9 "Modify descriptor" 2011-06-04 RCSB #