data_PRDCC_000350
# 
_chem_comp.id                                    PRD_000350 
_chem_comp.name                                  SUCCINYL-ALA-ALA-PRO-LYS 
_chem_comp.formula                               "C21 H36 N5 O8" 
_chem_comp.formula_weight                        486.539 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000350 C1  C1  C 0 1 N N N ?      ?      ?      10.246 -0.768 -0.249 SIN 1 C1  polymer 1 1 1  ? ? ? 
PRD_000350 O1  O1  O 0 1 N N N ?      ?      ?      10.401 0.142  0.529  SIN 1 O1  polymer 1 1 2  ? ? ? 
PRD_000350 O2  O2  O 0 1 N Y N ?      ?      ?      11.312 -1.387 -0.780 SIN 1 O2  polymer 1 1 3  ? ? ? 
PRD_000350 C2  C2  C 0 1 N N N ?      ?      ?      8.854  -1.214 -0.618 SIN 1 C2  polymer 1 1 4  ? ? ? 
PRD_000350 C3  C3  C 0 1 N N N ?      ?      ?      7.829  -0.355 0.125  SIN 1 C3  polymer 1 1 5  ? ? ? 
PRD_000350 C4  C4  C 0 1 N N N 7.165  74.078 10.849 6.438  -0.801 -0.244 SIN 1 C4  polymer 1 1 6  ? ? ? 
PRD_000350 O3  O3  O 0 1 N N N 7.299  72.924 11.194 6.281  -1.715 -1.025 SIN 1 O3  polymer 1 1 7  ? ? ? 
PRD_000350 N1  N1  N 0 1 N N N 7.752  75.188 10.421 5.367  -0.183 0.294  ALA 2 N   polymer 1 1 8  ? ? ? 
PRD_000350 C5  C5  C 0 1 N N S 9.179  74.831 10.221 4.015  -0.616 -0.065 ALA 2 CA  polymer 1 1 9  ? ? ? 
PRD_000350 C6  C6  C 0 1 N N N 9.831  74.411 11.527 3.053  0.527  0.131  ALA 2 C   polymer 1 1 10 ? ? ? 
PRD_000350 O4  O4  O 0 1 N N N 9.717  75.099 12.529 3.457  1.598  0.531  ALA 2 O   polymer 1 1 11 ? ? ? 
PRD_000350 C7  C7  C 0 1 N N N 9.929  75.978 9.649  3.602  -1.789 0.826  ALA 2 CB  polymer 1 1 12 ? ? ? 
PRD_000350 N2  N2  N 0 1 N N N 10.521 73.289 11.496 1.743  0.359  -0.139 ALA 3 N   polymer 1 1 13 ? ? ? 
PRD_000350 C8  C8  C 0 1 N N S 11.189 72.801 12.675 0.807  1.470  0.052  ALA 3 CA  polymer 1 1 14 ? ? ? 
PRD_000350 C9  C9  C 0 1 N N N 12.390 71.939 12.264 -0.578 0.926  0.289  ALA 3 C   polymer 1 1 15 ? ? ? 
PRD_000350 O5  O5  O 0 1 N N N 12.363 71.245 11.247 -0.880 -0.169 -0.135 ALA 3 O   polymer 1 1 16 ? ? ? 
PRD_000350 C10 C10 C 0 1 N N N 10.266 71.962 13.454 0.801  2.352  -1.199 ALA 3 CB  polymer 1 1 17 ? ? ? 
PRD_000350 N3  N3  N 0 1 N N N 13.422 71.904 13.112 -1.480 1.656  0.974  PRO 4 N   polymer 1 1 18 ? ? ? 
PRD_000350 C11 C11 C 0 1 N N S 14.556 70.993 12.858 -2.828 1.211  1.359  PRO 4 CA  polymer 1 1 19 ? ? ? 
PRD_000350 C12 C12 C 0 1 N N N 14.143 69.524 12.880 -3.622 0.857  0.128  PRO 4 C   polymer 1 1 20 ? ? ? 
PRD_000350 O6  O6  O 0 1 N N N 13.209 69.154 13.611 -3.118 0.963  -0.970 PRO 4 O   polymer 1 1 21 ? ? ? 
PRD_000350 C13 C13 C 0 1 N N N 15.515 71.292 13.994 -3.503 2.384  2.100  PRO 4 CB  polymer 1 1 22 ? ? ? 
PRD_000350 C14 C14 C 0 1 N N N 15.097 72.619 14.472 -2.708 3.617  1.596  PRO 4 CG  polymer 1 1 23 ? ? ? 
PRD_000350 C15 C15 C 0 1 N N N 13.587 72.712 14.342 -1.278 3.031  1.466  PRO 4 CD  polymer 1 1 24 ? ? ? 
PRD_000350 N4  N4  N 0 1 N N N 14.844 68.665 12.137 -4.892 0.422  0.248  LYS 5 N   polymer 1 1 25 ? ? ? 
PRD_000350 C16 C16 C 0 1 N N S 14.574 67.248 12.114 -5.664 0.078  -0.949 LYS 5 CA  polymer 1 1 26 ? ? ? 
PRD_000350 C17 C17 C 0 1 N N N 15.725 66.417 12.676 -6.297 1.323  -1.514 LYS 5 C   polymer 1 1 27 ? ? ? 
PRD_000350 O7  O7  O 0 1 N N N 15.516 65.285 13.081 -6.120 2.389  -0.973 LYS 5 O   polymer 1 1 28 ? ? ? 
PRD_000350 C18 C18 C 0 1 N N N 14.402 66.802 10.687 -6.757 -0.927 -0.579 LYS 5 CB  polymer 1 1 29 ? ? ? 
PRD_000350 C19 C19 C 0 1 N N N 13.146 67.321 10.091 -6.113 -2.237 -0.122 LYS 5 CG  polymer 1 1 30 ? ? ? 
PRD_000350 C20 C20 C 0 1 N N N 13.115 66.752 8.732  -7.206 -3.241 0.248  LYS 5 CD  polymer 1 1 31 ? ? ? 
PRD_000350 C21 C21 C 0 1 N N N 11.977 67.168 7.971  -6.562 -4.552 0.704  LYS 5 CE  polymer 1 1 32 ? ? ? 
PRD_000350 N5  N5  N 1 1 N N N 12.147 66.774 6.521  -7.611 -5.516 1.059  LYS 5 NZ  polymer 1 1 33 ? ? ? 
PRD_000350 O8  O8  O 0 1 N Y N ?      ?      ?      -7.056 1.249  -2.618 LYS 5 OXT polymer 1 1 34 ? ? ? 
PRD_000350 H1  H1  H 0 1 N Y N ?      ?      ?      12.184 -1.069 -0.510 SIN 1 HO2 polymer 1 1 35 ? ? ? 
PRD_000350 H2  H2  H 0 1 N N N ?      ?      ?      8.710  -1.103 -1.693 SIN 1 H21 polymer 1 1 36 ? ? ? 
PRD_000350 H3  H3  H 0 1 N N N ?      ?      ?      8.722  -2.260 -0.341 SIN 1 H22 polymer 1 1 37 ? ? ? 
PRD_000350 H4  H4  H 0 1 N N N ?      ?      ?      7.973  -0.467 1.200  SIN 1 H31 polymer 1 1 38 ? ? ? 
PRD_000350 H5  H5  H 0 1 N N N ?      ?      ?      7.962  0.690  -0.153 SIN 1 H32 polymer 1 1 39 ? ? ? 
PRD_000350 H6  H6  H 0 1 N N N 7.323  76.078 10.266 5.493  0.548  0.918  ALA 2 H   polymer 1 1 40 ? ? ? 
PRD_000350 H7  H7  H 0 1 N N N 9.237  73.986 9.519  3.999  -0.930 -1.109 ALA 2 HA  polymer 1 1 41 ? ? ? 
PRD_000350 H8  H8  H 0 1 N N N 10.982 75.694 9.508  3.618  -1.476 1.870  ALA 2 HB1 polymer 1 1 42 ? ? ? 
PRD_000350 H9  H9  H 0 1 N N N 9.491  76.255 8.679  2.595  -2.112 0.559  ALA 2 HB2 polymer 1 1 43 ? ? ? 
PRD_000350 H10 H10 H 0 1 N N N 9.869  76.835 10.336 4.298  -2.616 0.684  ALA 2 HB3 polymer 1 1 44 ? ? ? 
PRD_000350 H11 H11 H 0 1 N N N 10.582 72.770 10.643 1.419  -0.498 -0.459 ALA 3 H   polymer 1 1 45 ? ? ? 
PRD_000350 H12 H12 H 0 1 N N N 11.543 73.641 13.291 1.118  2.062  0.913  ALA 3 HA  polymer 1 1 46 ? ? ? 
PRD_000350 H13 H13 H 0 1 N N N 10.778 71.590 14.354 0.407  1.784  -2.042 ALA 3 HB1 polymer 1 1 47 ? ? ? 
PRD_000350 H14 H14 H 0 1 N N N 9.390  72.558 13.750 0.174  3.226  -1.024 ALA 3 HB2 polymer 1 1 48 ? ? ? 
PRD_000350 H15 H15 H 0 1 N N N 9.939  71.110 12.840 1.819  2.674  -1.421 ALA 3 HB3 polymer 1 1 49 ? ? ? 
PRD_000350 H16 H16 H 0 1 N N N 15.031 71.231 11.895 -2.758 0.344  2.017  PRO 4 HA  polymer 1 1 50 ? ? ? 
PRD_000350 H17 H17 H 0 1 N N N 15.421 70.541 14.793 -4.554 2.462  1.822  PRO 4 HB2 polymer 1 1 51 ? ? ? 
PRD_000350 H18 H18 H 0 1 N N N 16.554 71.316 13.633 -3.397 2.271  3.179  PRO 4 HB3 polymer 1 1 52 ? ? ? 
PRD_000350 H19 H19 H 0 1 N N N 15.389 72.745 15.525 -3.085 3.957  0.632  PRO 4 HG2 polymer 1 1 53 ? ? ? 
PRD_000350 H20 H20 H 0 1 N N N 15.573 73.402 13.863 -2.733 4.424  2.329  PRO 4 HG3 polymer 1 1 54 ? ? ? 
PRD_000350 H21 H21 H 0 1 N N N 13.246 73.749 14.206 -0.781 3.017  2.436  PRO 4 HD2 polymer 1 1 55 ? ? ? 
PRD_000350 H22 H22 H 0 1 N N N 13.069 72.266 15.204 -0.696 3.609  0.748  PRO 4 HD3 polymer 1 1 56 ? ? ? 
PRD_000350 H23 H23 H 0 1 N N N 15.589 69.019 11.572 -5.295 0.337  1.126  LYS 5 H   polymer 1 1 57 ? ? ? 
PRD_000350 H24 H24 H 0 1 N N N 13.658 67.025 12.680 -5.002 -0.364 -1.694 LYS 5 HA  polymer 1 1 58 ? ? ? 
PRD_000350 H25 H25 H 0 1 N N N 15.254 67.168 10.095 -7.366 -0.520 0.229  LYS 5 HB2 polymer 1 1 59 ? ? ? 
PRD_000350 H26 H26 H 0 1 N N N 14.381 65.703 10.658 -7.387 -1.115 -1.448 LYS 5 HB3 polymer 1 1 60 ? ? ? 
PRD_000350 H27 H27 H 0 1 N N N 12.274 66.987 10.672 -5.504 -2.643 -0.930 LYS 5 HG2 polymer 1 1 61 ? ? ? 
PRD_000350 H28 H28 H 0 1 N N N 13.161 68.420 10.051 -5.483 -2.049 0.747  LYS 5 HG3 polymer 1 1 62 ? ? ? 
PRD_000350 H29 H29 H 0 1 N N N 14.025 67.067 8.200  -7.815 -2.835 1.056  LYS 5 HD2 polymer 1 1 63 ? ? ? 
PRD_000350 H30 H30 H 0 1 N N N 13.099 65.655 8.813  -7.836 -3.430 -0.622 LYS 5 HD3 polymer 1 1 64 ? ? ? 
PRD_000350 H31 H31 H 0 1 N N N 11.074 66.687 8.375  -5.953 -4.958 -0.104 LYS 5 HE2 polymer 1 1 65 ? ? ? 
PRD_000350 H32 H32 H 0 1 N N N 11.873 68.261 8.041  -5.932 -4.363 1.574  LYS 5 HE3 polymer 1 1 66 ? ? ? 
PRD_000350 H33 H33 H 0 1 N N N 11.347 67.069 5.999  -8.194 -5.690 0.255  LYS 5 HZ1 polymer 1 1 67 ? ? ? 
PRD_000350 H34 H34 H 0 1 N N N 12.966 67.211 6.151  -7.186 -6.380 1.360  LYS 5 HZ2 polymer 1 1 68 ? ? ? 
PRD_000350 H35 H35 H 0 1 N N N 12.240 65.781 6.454  -8.175 -5.140 1.807  LYS 5 HZ3 polymer 1 1 69 ? ? ? 
PRD_000350 H36 H36 H 0 1 N Y N ?      ?      ?      -7.440 2.074  -2.943 LYS 5 HXT polymer 1 1 70 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000350 C1  O1  DOUB N N 1  
PRD_000350 C1  O2  SING N N 2  
PRD_000350 C1  C2  SING N N 3  
PRD_000350 O2  H1  SING N N 4  
PRD_000350 C2  C3  SING N N 5  
PRD_000350 C2  H2  SING N N 6  
PRD_000350 C2  H3  SING N N 7  
PRD_000350 C3  C4  SING N N 8  
PRD_000350 C3  H4  SING N N 9  
PRD_000350 C3  H5  SING N N 10 
PRD_000350 C4  O3  DOUB N N 11 
PRD_000350 N1  C5  SING N N 12 
PRD_000350 N1  H6  SING N N 13 
PRD_000350 C5  C6  SING N N 14 
PRD_000350 C5  C7  SING N N 15 
PRD_000350 C5  H7  SING N N 16 
PRD_000350 C6  O4  DOUB N N 17 
PRD_000350 C7  H8  SING N N 18 
PRD_000350 C7  H9  SING N N 19 
PRD_000350 C7  H10 SING N N 20 
PRD_000350 N2  C8  SING N N 21 
PRD_000350 N2  H11 SING N N 22 
PRD_000350 C8  C9  SING N N 23 
PRD_000350 C8  C10 SING N N 24 
PRD_000350 C8  H12 SING N N 25 
PRD_000350 C9  O5  DOUB N N 26 
PRD_000350 C10 H13 SING N N 27 
PRD_000350 C10 H14 SING N N 28 
PRD_000350 C10 H15 SING N N 29 
PRD_000350 N3  C11 SING N N 30 
PRD_000350 N3  C15 SING N N 31 
PRD_000350 C11 C12 SING N N 32 
PRD_000350 C11 C13 SING N N 33 
PRD_000350 C11 H16 SING N N 34 
PRD_000350 C12 O6  DOUB N N 35 
PRD_000350 C13 C14 SING N N 36 
PRD_000350 C13 H17 SING N N 37 
PRD_000350 C13 H18 SING N N 38 
PRD_000350 C14 C15 SING N N 39 
PRD_000350 C14 H19 SING N N 40 
PRD_000350 C14 H20 SING N N 41 
PRD_000350 C15 H21 SING N N 42 
PRD_000350 C15 H22 SING N N 43 
PRD_000350 N4  C16 SING N N 44 
PRD_000350 N4  H23 SING N N 45 
PRD_000350 C16 C17 SING N N 46 
PRD_000350 C16 C18 SING N N 47 
PRD_000350 C16 H24 SING N N 48 
PRD_000350 C17 O7  DOUB N N 49 
PRD_000350 C17 O8  SING N N 50 
PRD_000350 C18 C19 SING N N 51 
PRD_000350 C18 H25 SING N N 52 
PRD_000350 C18 H26 SING N N 53 
PRD_000350 C19 C20 SING N N 54 
PRD_000350 C19 H27 SING N N 55 
PRD_000350 C19 H28 SING N N 56 
PRD_000350 C20 C21 SING N N 57 
PRD_000350 C20 H29 SING N N 58 
PRD_000350 C20 H30 SING N N 59 
PRD_000350 C21 N5  SING N N 60 
PRD_000350 C21 H31 SING N N 61 
PRD_000350 C21 H32 SING N N 62 
PRD_000350 N5  H33 SING N N 63 
PRD_000350 N5  H34 SING N N 64 
PRD_000350 N5  H35 SING N N 65 
PRD_000350 O8  H36 SING N N 66 
PRD_000350 C4  N1  SING N N 67 
PRD_000350 C6  N2  SING N N 68 
PRD_000350 C9  N3  SING N N 69 
PRD_000350 C12 N4  SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000350 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)O)CCCC[NH3+])C1N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)O)C)C)CCC1"                                                                                                                            
PRD_000350 InChI            InChI                1.03  "InChI=1S/C21H35N5O8/c1-12(23-16(27)8-9-17(28)29)18(30)24-13(2)20(32)26-11-5-7-15(26)19(31)25-14(21(33)34)6-3-4-10-22/h12-15H,3-11,22H2,1-2H3,(H,23,27)(H,24,30)(H,25,31)(H,28,29)(H,33,34)/p+1" 
PRD_000350 InChIKey         InChI                1.03  GKSGBRRPQPPRLY-UHFFFAOYSA-O                                                                                                                                                                      
PRD_000350 SMILES_CANONICAL CACTVS               3.370 "C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCC[NH3+])C(O)=O"                                                                                                            
PRD_000350 SMILES           CACTVS               3.370 "C[CH](NC(=O)CCC(O)=O)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](CCCC[NH3+])C(O)=O"                                                                                                                  
PRD_000350 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCC[NH3+])C(=O)O)NC(=O)CCC(=O)O"                                                                                                           
PRD_000350 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC(C)C(=O)N1CCCC1C(=O)NC(CCCC[NH3+])C(=O)O)NC(=O)CCC(=O)O"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000350 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-carboxypropanoyl)-L-alanyl-L-alanyl-L-prolyl-6-ammonio-L-norleucine"                                                                                                       
PRD_000350 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(5S)-6-oxidanyl-6-oxidanylidene-5-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]hexyl]azanium" 
# 
