data_PRDCC_001080
# 
_chem_comp.id                                    PRD_001080 
_chem_comp.name                                  "Peptide inhibitor MPT-DPP-ARG-G-LEU-NH2" 
_chem_comp.formula                               "C20 H40 N9 O5 S" 
_chem_comp.formula_weight                        518.654 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_001080 C1  C1  C 0 1 N N N 4.508  -0.057 37.639 7.864  2.286  0.396  MPT 1 CA   polymer 1 1 1  ? ? ? 
PRD_001080 C2  C2  C 0 1 N N N 4.195  1.230  36.951 6.436  2.072  -0.033 MPT 1 C    polymer 1 1 2  ? ? ? 
PRD_001080 O1  O1  O 0 1 N N N 3.284  1.286  36.127 5.839  2.954  -0.613 MPT 1 O    polymer 1 1 3  ? ? ? 
PRD_001080 C3  C3  C 0 1 N N N 3.733  -1.198 37.021 8.317  3.688  -0.017 MPT 1 CB   polymer 1 1 4  ? ? ? 
PRD_001080 S1  S1  S 0 1 N N N 4.072  -2.649 37.980 10.036 3.945  0.500  MPT 1 SG   polymer 1 1 5  ? ? ? 
PRD_001080 N1  N1  N 0 1 N N N 6.760  3.549  35.377 4.912  -1.705 -0.323 DPP 2 N    polymer 1 1 6  ? ? ? 
PRD_001080 C4  C4  C 0 1 N N S 5.339  3.527  35.250 3.981  -0.709 0.223  DPP 2 CA   polymer 1 1 7  ? ? ? 
PRD_001080 C5  C5  C 0 1 N N N 5.014  4.685  34.348 2.596  -0.969 -0.313 DPP 2 C    polymer 1 1 8  ? ? ? 
PRD_001080 O2  O2  O 0 1 N N N 5.735  5.661  34.366 2.450  -1.627 -1.321 DPP 2 O    polymer 1 1 9  ? ? ? 
PRD_001080 C6  C6  C 0 1 N N N 4.695  3.638  36.598 4.433  0.693  -0.191 DPP 2 CB   polymer 1 1 10 ? ? ? 
PRD_001080 N2  N2  N 0 1 N N N 4.980  2.393  37.284 5.822  0.901  0.227  DPP 2 NG   polymer 1 1 11 ? ? ? 
PRD_001080 N3  N3  N 0 1 N N N 3.838  4.609  33.479 1.521  -0.469 0.328  ARG 3 N    polymer 1 1 12 ? ? ? 
PRD_001080 C7  C7  C 0 1 N N S 3.544  5.735  32.608 0.175  -0.721 -0.193 ARG 3 CA   polymer 1 1 13 ? ? ? 
PRD_001080 C8  C8  C 0 1 N N N 2.776  6.802  33.347 -0.755 0.371  0.268  ARG 3 C    polymer 1 1 14 ? ? ? 
PRD_001080 O3  O3  O 0 1 N N N 2.945  7.984  33.039 -0.335 1.272  0.963  ARG 3 O    polymer 1 1 15 ? ? ? 
PRD_001080 C9  C9  C 0 1 N N N 2.820  5.259  31.382 -0.327 -2.071 0.324  ARG 3 CB   polymer 1 1 16 ? ? ? 
PRD_001080 C10 C10 C 0 1 N N N 1.502  5.953  31.239 0.545  -3.192 -0.246 ARG 3 CG   polymer 1 1 17 ? ? ? 
PRD_001080 C11 C11 C 0 1 N N N 0.974  5.793  29.806 0.042  -4.541 0.271  ARG 3 CD   polymer 1 1 18 ? ? ? 
PRD_001080 N4  N4  N 0 1 N N N 1.950  6.168  28.796 0.877  -5.615 -0.275 ARG 3 NE   polymer 1 1 19 ? ? ? 
PRD_001080 C12 C12 C 0 1 N N N 1.695  7.316  27.929 0.615  -6.917 0.051  ARG 3 CZ   polymer 1 1 20 ? ? ? 
PRD_001080 N5  N5  N 0 1 N N N 2.561  7.676  26.982 -0.398 -7.210 0.864  ARG 3 NH1  polymer 1 1 21 ? ? ? 
PRD_001080 N6  N6  N 1 1 N N N 0.597  7.999  28.098 1.374  -7.893 -0.446 ARG 3 NH2  polymer 1 1 22 ? ? ? 
PRD_001080 N7  N7  N 0 1 N N N 1.843  6.472  34.443 -2.053 0.347  -0.093 GLY 4 N    polymer 1 1 23 ? ? ? 
PRD_001080 C13 C13 C 0 1 N N N 1.156  7.589  35.090 -2.958 1.409  0.356  GLY 4 CA   polymer 1 1 24 ? ? ? 
PRD_001080 C14 C14 C 0 1 N N N -0.135 7.891  34.347 -4.342 1.149  -0.181 GLY 4 C    polymer 1 1 25 ? ? ? 
PRD_001080 O4  O4  O 0 1 N N N -0.394 7.283  33.332 -4.552 0.174  -0.869 GLY 4 O    polymer 1 1 26 ? ? ? 
PRD_001080 N8  N8  N 0 1 N N N -1.076 8.894  34.843 -5.346 2.002  0.105  LEU 5 N    polymer 1 1 27 ? ? ? 
PRD_001080 C15 C15 C 0 1 N N S -2.328 9.215  34.163 -6.692 1.749  -0.416 LEU 5 CA   polymer 1 1 28 ? ? ? 
PRD_001080 C16 C16 C 0 1 N N N -2.154 9.972  32.914 -6.804 2.312  -1.809 LEU 5 C    polymer 1 1 29 ? ? ? 
PRD_001080 O5  O5  O 0 1 N N N -3.074 10.029 32.114 -5.854 2.868  -2.317 LEU 5 O    polymer 1 1 30 ? ? ? 
PRD_001080 C17 C17 C 0 1 N N N -3.123 10.197 34.997 -7.724 2.422  0.491  LEU 5 CB   polymer 1 1 31 ? ? ? 
PRD_001080 C18 C18 C 0 1 N N N -3.540 9.522  36.277 -7.695 1.765  1.872  LEU 5 CG   polymer 1 1 32 ? ? ? 
PRD_001080 C19 C19 C 0 1 N N N -3.811 10.582 37.298 -8.637 2.518  2.814  LEU 5 CD1  polymer 1 1 33 ? ? ? 
PRD_001080 C20 C20 C 0 1 N N N -4.750 8.692  36.011 -8.149 0.309  1.754  LEU 5 CD2  polymer 1 1 34 ? ? ? 
PRD_001080 N9  N9  N 0 1 N N N -1.039 10.616 32.706 -7.961 2.196  -2.491 NH2 6 N    polymer 1 1 35 ? ? ? 
PRD_001080 H1  H1  H 0 1 N N N 5.585  -0.262 37.549 7.937  2.186  1.480  MPT 1 HA1  polymer 1 1 36 ? ? ? 
PRD_001080 H2  H2  H 0 1 N N N 4.239  0.028  38.702 8.503  1.543  -0.081 MPT 1 HA2  polymer 1 1 37 ? ? ? 
PRD_001080 H3  H3  H 0 1 N N N 2.656  -0.976 37.043 8.244  3.788  -1.100 MPT 1 HB1  polymer 1 1 38 ? ? ? 
PRD_001080 H4  H4  H 0 1 N N N 4.055  -1.351 35.980 7.679  4.431  0.460  MPT 1 HB2  polymer 1 1 39 ? ? ? 
PRD_001080 H5  H5  H 0 1 N N N 3.364  -3.550 37.366 10.295 5.196  0.078  MPT 1 HG   polymer 1 1 40 ? ? ? 
PRD_001080 H6  H6  H 0 1 N N N 7.054  2.799  35.970 4.672  -2.634 -0.010 DPP 2 H    polymer 1 1 41 ? ? ? 
PRD_001080 H7  H7  H 0 1 N Y N 7.177  3.443  34.474 4.941  -1.659 -1.330 DPP 2 H2   polymer 1 1 42 ? ? ? 
PRD_001080 H8  H8  H 0 1 N N N 5.014  2.592  34.769 3.969  -0.780 1.311  DPP 2 HA   polymer 1 1 43 ? ? ? 
PRD_001080 H9  H9  H 0 1 N N N 5.119  4.486  37.155 4.361  0.793  -1.273 DPP 2 HB2  polymer 1 1 44 ? ? ? 
PRD_001080 H10 H10 H 0 1 N N N 3.609  3.775  36.492 3.795  1.436  0.287  DPP 2 HB3  polymer 1 1 45 ? ? ? 
PRD_001080 H11 H11 H 0 1 N N N 5.704  2.342  37.972 6.300  0.196  0.691  DPP 2 HG2  polymer 1 1 46 ? ? ? 
PRD_001080 H12 H12 H 0 1 N N N 3.250  3.800  33.485 1.638  0.058  1.134  ARG 3 H    polymer 1 1 47 ? ? ? 
PRD_001080 H13 H13 H 0 1 N N N 4.497  6.177  32.282 0.205  -0.738 -1.283 ARG 3 HA   polymer 1 1 48 ? ? ? 
PRD_001080 H14 H14 H 0 1 N N N 3.436  5.469  30.495 -0.273 -2.086 1.412  ARG 3 HB2  polymer 1 1 49 ? ? ? 
PRD_001080 H15 H15 H 0 1 N N N 2.650  4.175  31.462 -1.360 -2.218 0.009  ARG 3 HB3  polymer 1 1 50 ? ? ? 
PRD_001080 H16 H16 H 0 1 N N N 0.781  5.513  31.944 0.490  -3.177 -1.335 ARG 3 HG2  polymer 1 1 51 ? ? ? 
PRD_001080 H17 H17 H 0 1 N N N 1.628  7.023  31.463 1.578  -3.044 0.068  ARG 3 HG3  polymer 1 1 52 ? ? ? 
PRD_001080 H18 H18 H 0 1 N N N 0.695  4.740  29.651 0.097  -4.556 1.359  ARG 3 HD2  polymer 1 1 53 ? ? ? 
PRD_001080 H19 H19 H 0 1 N N N 0.084  6.429  29.687 -0.991 -4.689 -0.044 ARG 3 HD3  polymer 1 1 54 ? ? ? 
PRD_001080 H20 H20 H 0 1 N N N 2.794  5.641  28.695 1.615  -5.402 -0.868 ARG 3 HE   polymer 1 1 55 ? ? ? 
PRD_001080 H21 H21 H 0 0 N N N 2.368  8.468  26.403 -0.951 -6.499 1.225  ARG 3 HH11 polymer 1 1 56 ? ? ? 
PRD_001080 H22 H22 H 0 0 N N N 3.404  7.154  26.850 -0.583 -8.133 1.095  ARG 3 HH12 polymer 1 1 57 ? ? ? 
PRD_001080 H23 H23 H 0 0 N N N 0.406  8.791  27.518 2.112  -7.680 -1.038 ARG 3 HH21 polymer 1 1 58 ? ? ? 
PRD_001080 H24 H24 H 0 0 N N N -0.054 7.731  28.808 1.189  -8.816 -0.215 ARG 3 HH22 polymer 1 1 59 ? ? ? 
PRD_001080 H25 H25 H 0 1 N N N 1.688  5.527  34.730 -2.389 -0.373 -0.649 GLY 4 H    polymer 1 1 60 ? ? ? 
PRD_001080 H26 H26 H 0 1 N N N 0.925  7.323  36.132 -2.987 1.425  1.445  GLY 4 HA2  polymer 1 1 61 ? ? ? 
PRD_001080 H27 H27 H 0 1 N N N 1.805  8.477  35.073 -2.600 2.371  -0.013 GLY 4 HA3  polymer 1 1 62 ? ? ? 
PRD_001080 H28 H28 H 0 1 N N N -0.852 9.383  35.686 -5.178 2.782  0.656  LEU 5 H    polymer 1 1 63 ? ? ? 
PRD_001080 H29 H29 H 0 1 N N N -2.920 8.305  33.986 -6.876 0.675  -0.441 LEU 5 HA   polymer 1 1 64 ? ? ? 
PRD_001080 H30 H30 H 0 1 N N N -2.501 11.074 35.228 -7.487 3.482  0.587  LEU 5 HB2  polymer 1 1 65 ? ? ? 
PRD_001080 H31 H31 H 0 1 N N N -4.016 10.517 34.440 -8.717 2.310  0.056  LEU 5 HB3  polymer 1 1 66 ? ? ? 
PRD_001080 H32 H32 H 0 1 N N N -2.723 8.876  36.630 -6.681 1.799  2.269  LEU 5 HG   polymer 1 1 67 ? ? ? 
PRD_001080 H33 H33 H 0 0 N N N -4.118 10.111 38.244 -9.652 2.484  2.417  LEU 5 HD11 polymer 1 1 68 ? ? ? 
PRD_001080 H34 H34 H 0 0 N N N -2.899 11.174 37.463 -8.616 2.050  3.799  LEU 5 HD12 polymer 1 1 69 ? ? ? 
PRD_001080 H35 H35 H 0 0 N N N -4.615 11.240 36.938 -8.314 3.556  2.899  LEU 5 HD13 polymer 1 1 70 ? ? ? 
PRD_001080 H36 H36 H 0 0 N N N -5.065 8.193  36.940 -7.478 -0.227 1.082  LEU 5 HD21 polymer 1 1 71 ? ? ? 
PRD_001080 H37 H37 H 0 0 N N N -5.564 9.336  35.647 -8.128 -0.159 2.738  LEU 5 HD22 polymer 1 1 72 ? ? ? 
PRD_001080 H38 H38 H 0 0 N N N -4.514 7.934  35.250 -9.164 0.276  1.357  LEU 5 HD23 polymer 1 1 73 ? ? ? 
PRD_001080 H39 H39 H 0 1 N N N -0.927 11.168 31.880 -8.721 1.751  -2.085 NH2 6 HN1  polymer 1 1 74 ? ? ? 
PRD_001080 H40 H40 H 0 1 N N N -0.296 10.558 33.373 -8.034 2.558  -3.388 NH2 6 HN2  polymer 1 1 75 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_001080 C1  C2  SING N N 1  
PRD_001080 C1  C3  SING N N 2  
PRD_001080 C1  H1  SING N N 3  
PRD_001080 C1  H2  SING N N 4  
PRD_001080 C2  O1  DOUB N N 5  
PRD_001080 C3  S1  SING N N 6  
PRD_001080 C3  H3  SING N N 7  
PRD_001080 C3  H4  SING N N 8  
PRD_001080 S1  H5  SING N N 9  
PRD_001080 N1  C4  SING N N 10 
PRD_001080 N1  H6  SING N N 11 
PRD_001080 N1  H7  SING N N 12 
PRD_001080 C4  C5  SING N N 13 
PRD_001080 C4  C6  SING N N 14 
PRD_001080 C4  H8  SING N N 15 
PRD_001080 C5  O2  DOUB N N 16 
PRD_001080 C6  N2  SING N N 17 
PRD_001080 C6  H9  SING N N 18 
PRD_001080 C6  H10 SING N N 19 
PRD_001080 N2  H11 SING N N 20 
PRD_001080 N3  C7  SING N N 21 
PRD_001080 N3  H12 SING N N 22 
PRD_001080 C7  C8  SING N N 23 
PRD_001080 C7  C9  SING N N 24 
PRD_001080 C7  H13 SING N N 25 
PRD_001080 C8  O3  DOUB N N 26 
PRD_001080 C9  C10 SING N N 27 
PRD_001080 C9  H14 SING N N 28 
PRD_001080 C9  H15 SING N N 29 
PRD_001080 C10 C11 SING N N 30 
PRD_001080 C10 H16 SING N N 31 
PRD_001080 C10 H17 SING N N 32 
PRD_001080 C11 N4  SING N N 33 
PRD_001080 C11 H18 SING N N 34 
PRD_001080 C11 H19 SING N N 35 
PRD_001080 N4  C12 SING N N 36 
PRD_001080 N4  H20 SING N N 37 
PRD_001080 C12 N5  SING N N 38 
PRD_001080 C12 N6  DOUB N N 39 
PRD_001080 N5  H21 SING N N 40 
PRD_001080 N5  H22 SING N N 41 
PRD_001080 N6  H23 SING N N 42 
PRD_001080 N6  H24 SING N N 43 
PRD_001080 N7  C13 SING N N 44 
PRD_001080 N7  H25 SING N N 45 
PRD_001080 C13 C14 SING N N 46 
PRD_001080 C13 H26 SING N N 47 
PRD_001080 C13 H27 SING N N 48 
PRD_001080 C14 O4  DOUB N N 49 
PRD_001080 N8  C15 SING N N 50 
PRD_001080 N8  H28 SING N N 51 
PRD_001080 C15 C16 SING N N 52 
PRD_001080 C15 C17 SING N N 53 
PRD_001080 C15 H29 SING N N 54 
PRD_001080 C16 O5  DOUB N N 55 
PRD_001080 C17 C18 SING N N 56 
PRD_001080 C17 H30 SING N N 57 
PRD_001080 C17 H31 SING N N 58 
PRD_001080 C18 C19 SING N N 59 
PRD_001080 C18 C20 SING N N 60 
PRD_001080 C18 H32 SING N N 61 
PRD_001080 C19 H33 SING N N 62 
PRD_001080 C19 H34 SING N N 63 
PRD_001080 C19 H35 SING N N 64 
PRD_001080 C20 H36 SING N N 65 
PRD_001080 C20 H37 SING N N 66 
PRD_001080 C20 H38 SING N N 67 
PRD_001080 N9  H39 SING N N 68 
PRD_001080 N9  H40 SING N N 69 
PRD_001080 C2  N2  SING N N 70 
PRD_001080 C5  N3  SING N N 71 
PRD_001080 C8  N7  SING N N 72 
PRD_001080 C14 N8  SING N N 73 
PRD_001080 C16 N9  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_001080 SMILES           ACDLabs              12.01 "O=C(NCC(N)C(=O)NC(C(=O)NCC(=O)NC(C(=O)N)CC(C)C)CCCNC(=[NH2+])\N)CCS"                                                                                                                                                                 
PRD_001080 InChI            InChI                1.03  "InChI=1S/C20H39N9O5S/c1-11(2)8-14(17(22)32)28-16(31)10-27-19(34)13(4-3-6-25-20(23)24)29-18(33)12(21)9-26-15(30)5-7-35/h11-14,35H,3-10,21H2,1-2H3,(H2,22,32)(H,26,30)(H,27,34)(H,28,31)(H,29,33)(H4,23,24,25)/p+1/t12-,13-,14-/m0/s1" 
PRD_001080 InChIKey         InChI                1.03  VREFBLRHTPWEET-IHRRRGAJSA-O                                                                                                                                                                                                           
PRD_001080 SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](NC(=O)CNC(=O)[C@H](CCCNC(N)=[NH2+])NC(=O)[C@@H](N)CNC(=O)CCS)C(N)=O"                                                                                                                                                     
PRD_001080 SMILES           CACTVS               3.370 "CC(C)C[CH](NC(=O)CNC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)[CH](N)CNC(=O)CCS)C(N)=O"                                                                                                                                                         
PRD_001080 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N)NC(=O)CNC(=O)[C@H](CCCNC(=[NH2+])N)NC(=O)[C@H](CNC(=O)CCS)N"                                                                                                                                                     
PRD_001080 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)N)NC(=O)CNC(=O)C(CCCNC(=[NH2+])N)NC(=O)C(CNC(=O)CCS)N"                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_001080 "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(3-sulfanylpropanoyl)amino]-L-alanyl-N~5~-[amino(iminio)methyl]-L-ornithylglycyl-L-leucinamide"                                                                                                                             
PRD_001080 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-5-[[2-[[(2S)-1-azanyl-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]amino]-4-[[(2S)-2-azanyl-3-(3-sulfanylpropanoylamino)propanoyl]amino]-5-oxidanylidene-pentyl]amino]methylidene]azanium" 
# 
