data_PRDCC_002470
# 
_chem_comp.id                                    PRD_002470 
_chem_comp.name                                  "Agrocinopine A (alpha-L-arabinopyranose form)" 
_chem_comp.formula                               "C17 H31 O18 P" 
_chem_comp.formula_weight                        554.391 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002470 C1  C1  C 0 1 N N S 32.145 26.659 35.749 -4.537 -0.765 0.821  GLC 1 C1  polymer     1 1 1  ? ? ? 
PRD_002470 C2  C2  C 0 1 N N R 32.583 27.764 36.700 -5.534 -1.732 0.176  GLC 1 C2  polymer     1 1 2  ? ? ? 
PRD_002470 C3  C3  C 0 1 N N S 33.457 27.307 37.850 -5.422 -1.628 -1.348 GLC 1 C3  polymer     1 1 3  ? ? ? 
PRD_002470 C4  C4  C 0 1 N N S 33.900 25.926 37.867 -5.665 -0.175 -1.769 GLC 1 C4  polymer     1 1 4  ? ? ? 
PRD_002470 C5  C5  C 0 1 N N R 32.985 24.870 37.274 -4.663 0.731  -1.049 GLC 1 C5  polymer     1 1 5  ? ? ? 
PRD_002470 C6  C6  C 0 1 N N N 32.454 23.838 38.159 -4.938 2.191  -1.418 GLC 1 C6  polymer     1 1 6  ? ? ? 
PRD_002470 O1  O1  O 0 1 N N N 33.076 28.900 36.011 -5.238 -3.068 0.587  GLC 1 O2  polymer     1 1 7  ? ? ? 
PRD_002470 O2  O2  O 0 1 N N N 34.570 28.210 38.073 -4.115 -2.032 -1.760 GLC 1 O3  polymer     1 1 8  ? ? ? 
PRD_002470 O3  O3  O 0 1 N N N 34.643 25.579 39.062 -6.996 0.208  -1.415 GLC 1 O4  polymer     1 1 9  ? ? ? 
PRD_002470 O4  O4  O 0 1 N N N 31.856 25.472 36.459 -4.799 0.563  0.363  GLC 1 O5  polymer     1 1 10 ? ? ? 
PRD_002470 O5  O5  O 0 1 N N N 31.274 24.089 38.856 -3.933 3.026  -0.840 GLC 1 O6  polymer     1 1 11 ? ? ? 
PRD_002470 C7  C7  C 0 1 N N N 32.515 27.546 32.683 -2.415 -0.608 2.684  FRU 2 C1  polymer     1 1 12 ? ? ? 
PRD_002470 C8  C8  C 0 1 N N R 32.733 26.198 33.351 -2.189 -0.445 1.180  FRU 2 C2  polymer     1 1 13 ? ? ? 
PRD_002470 C9  C9  C 0 1 N N S 33.889 25.481 32.685 -0.803 -0.997 0.795  FRU 2 C3  polymer     1 1 14 ? ? ? 
PRD_002470 C10 C10 C 0 1 N N S 33.659 24.139 32.996 -0.040 0.236  0.252  FRU 2 C4  polymer     1 1 15 ? ? ? 
PRD_002470 C11 C11 C 0 1 N N R 32.184 24.023 32.915 -0.837 1.411  0.874  FRU 2 C5  polymer     1 1 16 ? ? ? 
PRD_002470 C12 C12 C 0 1 N N N 31.678 23.048 33.919 -0.669 2.679  0.036  FRU 2 C6  polymer     1 1 17 ? ? ? 
PRD_002470 O6  O6  O 0 1 N N N 33.262 28.625 33.168 -3.618 0.066  3.061  FRU 2 O1  polymer     1 1 18 ? ? ? 
PRD_002470 O7  O7  O 0 1 N Y N 33.124 26.391 34.752 -3.207 -1.140 0.457  FRU 2 O2  polymer     1 1 19 ? ? ? 
PRD_002470 O8  O8  O 0 1 N N N 35.163 25.926 33.094 -0.927 -1.996 -0.219 FRU 2 O3  polymer     1 1 20 ? ? ? 
PRD_002470 O9  O9  O 0 1 N N N 34.220 23.309 31.976 1.314  0.239  0.708  FRU 2 O4  polymer     1 1 21 ? ? ? 
PRD_002470 O10 O10 O 0 1 N N N 31.665 25.303 33.169 -2.205 0.950  0.832  FRU 2 O5  polymer     1 1 22 ? ? ? 
PRD_002470 O11 O11 O 0 1 N N N 30.291 22.866 33.890 -1.316 3.772  0.691  FRU 2 O6  polymer     1 1 23 ? ? ? 
PRD_002470 O12 O12 O 0 1 N N N 36.150 22.436 33.443 2.607  1.555  -1.165 LAO 3 OP2 non-polymer 2 2 24 ? ? ? 
PRD_002470 P1  P1  P 0 1 N N N 35.369 22.188 32.194 2.576  0.203  -0.291 LAO 3 P   non-polymer 2 2 25 ? ? ? 
PRD_002470 O13 O13 O 0 1 N N N 36.278 22.217 30.997 2.458  -0.965 -1.192 LAO 3 OP1 non-polymer 2 2 26 ? ? ? 
PRD_002470 O14 O14 O 0 1 N N N 34.634 20.785 32.354 3.934  0.086  0.565  LAO 3 O2  non-polymer 2 2 27 ? ? ? 
PRD_002470 C13 C13 C 0 1 N N R 34.258 19.884 31.277 5.221  -0.073 -0.036 LAO 3 C2  non-polymer 2 2 28 ? ? ? 
PRD_002470 C14 C14 C 0 1 N N S 32.833 19.639 31.325 5.854  -1.381 0.448  LAO 3 C3  non-polymer 2 2 29 ? ? ? 
PRD_002470 O15 O15 O 0 1 N N N 32.052 20.862 31.090 5.058  -2.486 0.014  LAO 3 O3  non-polymer 2 2 30 ? ? ? 
PRD_002470 C15 C15 C 0 1 N N S 32.344 18.584 30.494 7.263  -1.502 -0.141 LAO 3 C4  non-polymer 2 2 31 ? ? ? 
PRD_002470 O16 O16 O 0 1 N N N 32.519 18.882 29.088 7.181  -1.572 -1.566 LAO 3 O4  non-polymer 2 2 32 ? ? ? 
PRD_002470 C16 C16 C 0 1 N N N 33.131 17.310 30.740 8.084  -0.275 0.265  LAO 3 C5  non-polymer 2 2 33 ? ? ? 
PRD_002470 O17 O17 O 0 1 N N N 34.530 17.537 30.605 7.424  0.909  -0.189 LAO 3 O5  non-polymer 2 2 34 ? ? ? 
PRD_002470 C17 C17 C 0 1 N N R 35.036 18.585 31.424 6.121  1.100  0.364  LAO 3 C1  non-polymer 2 2 35 ? ? ? 
PRD_002470 O18 O18 O 0 1 N Y N 36.377 18.744 31.166 5.566  2.319  -0.133 LAO 3 O1  non-polymer 2 2 36 ? ? ? 
PRD_002470 H1  H1  H 0 1 N N N 31.226 27.003 35.252 -4.643 -0.804 1.905  GLC 1 H1  polymer     1 1 37 ? ? ? 
PRD_002470 H2  H2  H 0 1 N N N 31.650 28.095 37.180 -6.547 -1.470 0.485  GLC 1 H2  polymer     1 1 38 ? ? ? 
PRD_002470 H3  H3  H 0 1 N N N 32.818 27.414 38.739 -6.168 -2.272 -1.814 GLC 1 H3  polymer     1 1 39 ? ? ? 
PRD_002470 H4  H4  H 0 1 N N N 34.702 25.949 37.114 -5.532 -0.081 -2.847 GLC 1 H4  polymer     1 1 40 ? ? ? 
PRD_002470 H5  H5  H 0 1 N N N 33.608 24.336 36.542 -3.650 0.465  -1.351 GLC 1 H5  polymer     1 1 41 ? ? ? 
PRD_002470 H6  H6  H 0 1 N N N 32.281 22.943 37.543 -4.922 2.300  -2.503 GLC 1 H61 polymer     1 1 42 ? ? ? 
PRD_002470 H7  H7  H 0 1 N N N 33.231 23.624 38.907 -5.917 2.483  -1.038 GLC 1 H62 polymer     1 1 43 ? ? ? 
PRD_002470 H8  H8  H 0 1 N Y N 33.337 29.563 36.639 -5.285 -3.205 1.543  GLC 1 HO2 polymer     1 1 44 ? ? ? 
PRD_002470 H9  H9  H 0 1 N Y N 35.095 27.893 38.799 -3.890 -2.941 -1.519 GLC 1 HO3 polymer     1 1 45 ? ? ? 
PRD_002470 H10 H10 H 0 1 N Y N 34.906 24.667 39.018 -7.683 -0.328 -1.832 GLC 1 HO4 polymer     1 1 46 ? ? ? 
PRD_002470 H11 H11 H 0 1 N Y N 31.053 23.333 39.387 -4.044 3.967  -1.034 GLC 1 HO6 polymer     1 1 47 ? ? ? 
PRD_002470 H12 H12 H 0 1 N N N 32.755 27.430 31.616 -2.501 -1.667 2.926  FRU 2 H11 polymer     1 1 48 ? ? ? 
PRD_002470 H13 H13 H 0 1 N N N 31.451 27.803 32.794 -1.573 -0.178 3.227  FRU 2 H12 polymer     1 1 49 ? ? ? 
PRD_002470 H14 H14 H 0 1 N N N 33.790 25.624 31.599 -0.298 -1.403 1.672  FRU 2 H3  polymer     1 1 50 ? ? ? 
PRD_002470 H15 H15 H 0 1 N N N 34.026 23.868 33.997 -0.083 0.270  -0.837 FRU 2 H4  polymer     1 1 51 ? ? ? 
PRD_002470 H16 H16 H 0 1 N N N 31.900 23.686 31.907 -0.521 1.587  1.902  FRU 2 H5  polymer     1 1 52 ? ? ? 
PRD_002470 H17 H17 H 0 1 N N N 32.158 22.077 33.729 0.392  2.901  -0.080 FRU 2 H61 polymer     1 1 53 ? ? ? 
PRD_002470 H18 H18 H 0 1 N N N 31.959 23.406 34.920 -1.118 2.528  -0.946 FRU 2 H62 polymer     1 1 54 ? ? ? 
PRD_002470 H19 H19 H 0 1 N Y N 33.043 29.408 32.677 -3.825 0.004  4.003  FRU 2 HO1 polymer     1 1 55 ? ? ? 
PRD_002470 H20 H20 H 0 1 N Y N 35.833 25.433 32.636 -0.084 -2.378 -0.499 FRU 2 HO3 polymer     1 1 56 ? ? ? 
PRD_002470 H21 H21 H 0 1 N Y N 30.040 22.234 34.554 -1.249 4.611  0.215  FRU 2 HO6 polymer     1 1 57 ? ? ? 
PRD_002470 H22 H22 H 0 1 N N N 37.066 22.562 33.225 2.683  2.362  -0.638 LAO 3 H1A non-polymer 2 2 58 ? ? ? 
PRD_002470 H23 H23 H 0 1 N N N 34.520 20.340 30.311 5.116  -0.098 -1.120 LAO 3 H2  non-polymer 2 2 59 ? ? ? 
PRD_002470 H24 H24 H 0 1 N N N 32.613 19.340 32.360 5.911  -1.378 1.536  LAO 3 H3  non-polymer 2 2 60 ? ? ? 
PRD_002470 H25 H25 H 0 1 N Y N 32.381 21.560 31.644 5.401  -3.349 0.285  LAO 3 HO3 non-polymer 2 2 61 ? ? ? 
PRD_002470 H26 H26 H 0 1 N N N 31.282 18.395 30.707 7.741  -2.404 0.241  LAO 3 H4  non-polymer 2 2 62 ? ? ? 
PRD_002470 H27 H27 H 0 1 N Y N 32.045 19.676 28.871 8.039  -1.650 -2.006 LAO 3 HO4 non-polymer 2 2 63 ? ? ? 
PRD_002470 H28 H28 H 0 1 N N N 32.819 16.548 30.010 8.180  -0.245 1.350  LAO 3 H51 non-polymer 2 2 64 ? ? ? 
PRD_002470 H29 H29 H 0 1 N N N 32.922 16.950 31.758 9.075  -0.335 -0.186 LAO 3 H52 non-polymer 2 2 65 ? ? ? 
PRD_002470 H30 H30 H 0 1 N N N 34.922 18.272 32.472 6.190  1.148  1.451  LAO 3 H1  non-polymer 2 2 66 ? ? ? 
PRD_002470 H31 H31 H 0 1 N Y N 36.724 19.442 31.709 6.086  3.105  0.085  LAO 3 HO1 non-polymer 2 2 67 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002470 C1  C2  SING N N 1  
PRD_002470 C1  O4  SING N N 2  
PRD_002470 C1  H1  SING N N 3  
PRD_002470 C2  C3  SING N N 4  
PRD_002470 C2  O1  SING N N 5  
PRD_002470 C2  H2  SING N N 6  
PRD_002470 C3  C4  SING N N 7  
PRD_002470 C3  O2  SING N N 8  
PRD_002470 C3  H3  SING N N 9  
PRD_002470 C4  C5  SING N N 10 
PRD_002470 C4  O3  SING N N 11 
PRD_002470 C4  H4  SING N N 12 
PRD_002470 C5  C6  SING N N 13 
PRD_002470 C5  O4  SING N N 14 
PRD_002470 C5  H5  SING N N 15 
PRD_002470 C6  O5  SING N N 16 
PRD_002470 C6  H6  SING N N 17 
PRD_002470 C6  H7  SING N N 18 
PRD_002470 O1  H8  SING N N 19 
PRD_002470 O2  H9  SING N N 20 
PRD_002470 O3  H10 SING N N 21 
PRD_002470 O5  H11 SING N N 22 
PRD_002470 C7  C8  SING N N 23 
PRD_002470 C7  O6  SING N N 24 
PRD_002470 C7  H12 SING N N 25 
PRD_002470 C7  H13 SING N N 26 
PRD_002470 C8  C9  SING N N 27 
PRD_002470 C8  O7  SING N N 28 
PRD_002470 C8  O10 SING N N 29 
PRD_002470 C9  C10 SING N N 30 
PRD_002470 C9  O8  SING N N 31 
PRD_002470 C9  H14 SING N N 32 
PRD_002470 C10 C11 SING N N 33 
PRD_002470 C10 O9  SING N N 34 
PRD_002470 C10 H15 SING N N 35 
PRD_002470 C11 C12 SING N N 36 
PRD_002470 C11 O10 SING N N 37 
PRD_002470 C11 H16 SING N N 38 
PRD_002470 C12 O11 SING N N 39 
PRD_002470 C12 H17 SING N N 40 
PRD_002470 C12 H18 SING N N 41 
PRD_002470 O6  H19 SING N N 42 
PRD_002470 O8  H20 SING N N 43 
PRD_002470 O11 H21 SING N N 44 
PRD_002470 C16 O17 SING N N 45 
PRD_002470 C16 C15 SING N N 46 
PRD_002470 O17 C17 SING N N 47 
PRD_002470 O18 C17 SING N N 48 
PRD_002470 C17 C13 SING N N 49 
PRD_002470 C15 O16 SING N N 50 
PRD_002470 C15 C14 SING N N 51 
PRD_002470 C14 C13 SING N N 52 
PRD_002470 C14 O15 SING N N 53 
PRD_002470 C13 O14 SING N N 54 
PRD_002470 O14 P1  SING N N 55 
PRD_002470 P1  O13 DOUB N N 56 
PRD_002470 P1  O12 SING N N 57 
PRD_002470 O12 H22 SING N N 58 
PRD_002470 C13 H23 SING N N 59 
PRD_002470 C14 H24 SING N N 60 
PRD_002470 O15 H25 SING N N 61 
PRD_002470 C15 H26 SING N N 62 
PRD_002470 O16 H27 SING N N 63 
PRD_002470 C16 H28 SING N N 64 
PRD_002470 C16 H29 SING N N 65 
PRD_002470 C17 H30 SING N N 66 
PRD_002470 O18 H31 SING N N 67 
PRD_002470 C1  O7  SING N N 68 
PRD_002470 O9  P1  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002470 InChI            InChI                1.06  "InChI=1S/C17H31O18P/c18-1-6-9(23)10(24)11(25)16(31-6)33-17(4-20)14(26)12(7(2-19)32-17)34-36(28,29)35-13-8(22)5(21)3-30-15(13)27/h5-16,18-27H,1-4H2,(H,28,29)/t5-,6+,7+,8-,9-,10+,11+,12+,13+,14-,15+,16+,17-/m0/s1" 
PRD_002470 InChIKey         InChI                1.06  BUKOQCAFSQWRGX-FSCBZTLPSA-N                                                                                                                                                                                          
PRD_002470 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O[P](O)(=O)O[C@H]3[C@H](O)OC[C@H](O)[C@@H]3O)[C@@H]2O)[C@H](O)[C@H](O)[C@H]1O"                                                                                            
PRD_002470 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[C]2(CO)O[CH](CO)[CH](O[P](O)(=O)O[CH]3[CH](O)OC[CH](O)[CH]3O)[CH]2O)[CH](O)[CH](O)[CH]1O"                                                                                                            
PRD_002470 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@]([C@H]2O)(CO)O[C@@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)O"                                                                                   
PRD_002470 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C2O)(CO)OC3C(C(C(C(O3)CO)O)O)O)CO)O)O"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002470 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{S},5~{S})-2,5-bis(hydroxymethyl)-5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxolan-3-yl] [(2~{R},3~{R},4~{S},5~{S})-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" 
# 
