data_PRDCC_900002
# 
_chem_comp.id                                    PRD_900002 
_chem_comp.name                                  raffinose 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C18 H32 O16" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        504.437 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900002 "C1'"  C6  C 0 1 N N N -7.075 28.486 55.403 -3.403 1.711  -1.748 FRU 1 C1  polymer 1 1 1  ? ? ? 
PRD_900002 "C2'"  C5  C 0 1 N N S -6.041 29.047 54.504 -2.574 1.440  -0.491 FRU 1 C2  polymer 1 1 2  ? ? ? 
PRD_900002 "C3'"  C4  C 0 1 N N S -6.091 30.314 53.941 -2.979 2.421  0.626  FRU 1 C3  polymer 1 1 3  ? ? ? 
PRD_900002 "C4'"  C3  C 0 1 N N S -4.966 30.278 52.788 -1.692 3.237  0.900  FRU 1 C4  polymer 1 1 4  ? ? ? 
PRD_900002 "C5'"  C2  C 0 1 N N R -5.099 29.008 52.283 -0.890 3.028  -0.410 FRU 1 C5  polymer 1 1 5  ? ? ? 
PRD_900002 "C6'"  C1  C 0 1 N N N -3.823 28.389 51.766 0.608  3.214  -0.160 FRU 1 C6  polymer 1 1 6  ? ? ? 
PRD_900002 "O1'"  O5  O 0 1 N N N -8.251 28.565 54.592 -2.924 0.896  -2.820 FRU 1 O1  polymer 1 1 7  ? ? ? 
PRD_900002 O1     O6  O 0 1 N N N -4.780 29.101 55.314 -2.776 0.095  -0.053 FRU 1 O2  polymer 1 1 8  ? ? ? 
PRD_900002 "O3'"  O3  O 0 1 N N N -5.916 31.392 54.837 -3.378 1.707  1.798  FRU 1 O3  polymer 1 1 9  ? ? ? 
PRD_900002 "O4'"  O2  O 0 1 N N N -5.213 31.285 51.796 -1.996 4.619  1.097  FRU 1 O4  polymer 1 1 10 ? ? ? 
PRD_900002 "O2'"  O4  O 0 1 N N N -5.650 28.123 53.478 -1.180 1.660  -0.768 FRU 1 O5  polymer 1 1 11 ? ? ? 
PRD_900002 "O6'"  O1  O 0 1 N N N -4.172 27.087 51.197 1.330  2.921  -1.358 FRU 1 O6  polymer 1 1 12 ? ? ? 
PRD_900002 C1     C7  C 0 1 N N R -4.241 27.928 55.948 -2.245 -0.891 -0.941 GLC 2 C1  polymer 1 1 13 ? ? ? 
PRD_900002 C2     C8  C 0 1 N N R -3.873 28.250 57.375 -3.099 -2.159 -0.865 GLC 2 C2  polymer 1 1 14 ? ? ? 
PRD_900002 C3     C9  C 0 1 N N S -2.894 29.357 57.372 -3.030 -2.728 0.555  GLC 2 C3  polymer 1 1 15 ? ? ? 
PRD_900002 C4     C10 C 0 1 N N S -1.639 28.930 56.690 -1.566 -2.991 0.918  GLC 2 C4  polymer 1 1 16 ? ? ? 
PRD_900002 C5     C11 C 0 1 N N R -1.889 28.380 55.306 -0.770 -1.691 0.773  GLC 2 C5  polymer 1 1 17 ? ? ? 
PRD_900002 C6     C12 C 0 1 N N N -0.702 27.543 54.882 0.705  -1.959 1.076  GLC 2 C6  polymer 1 1 18 ? ? ? 
PRD_900002 O2     O7  O 0 1 N N N -5.089 28.610 58.102 -4.455 -1.842 -1.188 GLC 2 O2  polymer 1 1 19 ? ? ? 
PRD_900002 O3     O8  O 0 1 N N N -2.522 29.752 58.742 -3.766 -3.952 0.617  GLC 2 O3  polymer 1 1 20 ? ? ? 
PRD_900002 O4     O9  O 0 1 N N N -0.794 30.069 56.517 -1.483 -3.454 2.267  GLC 2 O4  polymer 1 1 21 ? ? ? 
PRD_900002 O5     O10 O 0 1 N N N -3.021 27.483 55.284 -0.902 -1.200 -0.562 GLC 2 O5  polymer 1 1 22 ? ? ? 
PRD_900002 O6     O11 O 0 1 N N N -0.701 27.316 53.469 1.437  -0.734 1.000  GLC 2 O6  polymer 1 1 23 ? ? ? 
PRD_900002 C1X    C13 C 0 1 N N S 0.154  26.256 53.084 2.803  -0.847 1.406  GLA 3 C1  polymer 1 1 24 ? ? ? 
PRD_900002 C2X    C18 C 0 1 N N R 0.351  26.230 51.596 3.442  0.544  1.440  GLA 3 C2  polymer 1 1 25 ? ? ? 
PRD_900002 C3X    C17 C 0 1 N N S -0.969 25.971 50.928 3.424  1.140  0.029  GLA 3 C3  polymer 1 1 26 ? ? ? 
PRD_900002 C4X    C16 C 0 1 N N R -1.547 24.666 51.376 4.153  0.189  -0.924 GLA 3 C4  polymer 1 1 27 ? ? ? 
PRD_900002 C5X    C14 C 0 1 N N R -1.648 24.610 52.890 3.487  -1.188 -0.867 GLA 3 C5  polymer 1 1 28 ? ? ? 
PRD_900002 C6X    C15 C 0 1 N N N -2.023 23.279 53.465 4.246  -2.161 -1.772 GLA 3 C6  polymer 1 1 29 ? ? ? 
PRD_900002 O2X    O16 O 0 1 N N N 0.886  27.490 51.165 2.701  1.388  2.324  GLA 3 O2  polymer 1 1 30 ? ? ? 
PRD_900002 O3X    O15 O 0 1 N N N -0.747 25.958 49.498 4.084  2.407  0.037  GLA 3 O3  polymer 1 1 31 ? ? ? 
PRD_900002 O4X    O14 O 0 1 N N N -0.722 23.569 50.972 5.522  0.074  -0.530 GLA 3 O4  polymer 1 1 32 ? ? ? 
PRD_900002 O5X    O12 O 0 1 N N N -0.379 24.978 53.538 3.510  -1.672 0.477  GLA 3 O5  polymer 1 1 33 ? ? ? 
PRD_900002 O6X    O13 O 0 1 N N N -1.046 22.296 53.224 3.559  -3.413 -1.809 GLA 3 O6  polymer 1 1 34 ? ? ? 
PRD_900002 "H1'"  H9  H 0 1 N N N -6.846 27.445 55.674 -4.449 1.475  -1.551 FRU 1 H11 polymer 1 1 35 ? ? ? 
PRD_900002 "H1'A" H10 H 0 0 N N N -7.179 29.089 56.317 -3.314 2.762  -2.022 FRU 1 H12 polymer 1 1 36 ? ? ? 
PRD_900002 "H3'"  H7  H 0 1 N N N -7.055 30.438 53.426 -3.781 3.076  0.286  FRU 1 H3  polymer 1 1 37 ? ? ? 
PRD_900002 "H4'"  H5  H 0 1 N N N -3.983 30.428 53.258 -1.150 2.834  1.756  FRU 1 H4  polymer 1 1 38 ? ? ? 
PRD_900002 "H5'"  H4  H 0 1 N N N -5.850 28.989 51.479 -1.236 3.710  -1.187 FRU 1 H5  polymer 1 1 39 ? ? ? 
PRD_900002 "H6'"  H2  H 0 1 N N N -3.106 28.260 52.590 0.930  2.539  0.633  FRU 1 H61 polymer 1 1 40 ? ? ? 
PRD_900002 "H6'A" H3  H 0 0 N N N -3.379 29.032 50.991 0.802  4.244  0.139  FRU 1 H62 polymer 1 1 41 ? ? ? 
PRD_900002 "HO1'" H11 H 0 0 N N N -8.994 28.225 55.077 -3.405 1.016  -3.650 FRU 1 HO1 polymer 1 1 42 ? ? ? 
PRD_900002 "HO3'" H8  H 0 0 N N N -6.600 31.371 55.496 -3.588 2.275  2.552  FRU 1 HO3 polymer 1 1 43 ? ? ? 
PRD_900002 "HO4'" H6  H 0 0 N N N -5.111 32.146 52.185 -1.217 5.185  1.184  FRU 1 HO4 polymer 1 1 44 ? ? ? 
PRD_900002 "HO6'" H1  H 0 0 N N N -3.389 26.668 50.861 2.278  3.103  -1.300 FRU 1 HO6 polymer 1 1 45 ? ? ? 
PRD_900002 H1     H12 H 0 1 N N N -4.986 27.118 55.941 -2.255 -0.506 -1.961 GLC 2 H1  polymer 1 1 46 ? ? ? 
PRD_900002 H2     H13 H 0 1 N N N -3.417 27.361 57.836 -2.720 -2.897 -1.573 GLC 2 H2  polymer 1 1 47 ? ? ? 
PRD_900002 H3     H15 H 0 1 N N N -3.320 30.222 56.842 -3.457 -2.010 1.256  GLC 2 H3  polymer 1 1 48 ? ? ? 
PRD_900002 H4     H17 H 0 1 N N N -1.132 28.166 57.298 -1.155 -3.746 0.247  GLC 2 H4  polymer 1 1 49 ? ? ? 
PRD_900002 H5     H19 H 0 1 N N N -2.033 29.208 54.596 -1.156 -0.949 1.473  GLC 2 H5  polymer 1 1 50 ? ? ? 
PRD_900002 H6     H21 H 0 1 N N N -0.744 26.574 55.400 1.103  -2.666 0.347  GLC 2 H61 polymer 1 1 51 ? ? ? 
PRD_900002 H6A    H20 H 0 1 N N N 0.224  28.068 55.161 0.801  -2.378 2.077  GLC 2 H62 polymer 1 1 52 ? ? ? 
PRD_900002 HO2    H14 H 0 1 N N N -4.870 28.815 59.003 -4.572 -1.472 -2.073 GLC 2 HO2 polymer 1 1 53 ? ? ? 
PRD_900002 HO3    H16 H 0 1 N N N -1.893 30.463 58.707 -4.702 -3.860 0.392  GLC 2 HO3 polymer 1 1 54 ? ? ? 
PRD_900002 HO4    H18 H 0 1 N N N 0.009  29.805 56.083 -1.970 -4.273 2.433  GLC 2 HO4 polymer 1 1 55 ? ? ? 
PRD_900002 H1X    H22 H 0 1 N N N 1.139  26.405 53.551 2.851  -1.294 2.399  GLA 3 H1  polymer 1 1 56 ? ? ? 
PRD_900002 H2X    H31 H 0 1 N N N 1.048  25.419 51.340 4.471  0.463  1.788  GLA 3 H2  polymer 1 1 57 ? ? ? 
PRD_900002 H3X    H29 H 0 1 N N N -1.666 26.781 51.188 2.393  1.268  -0.301 GLA 3 H3  polymer 1 1 58 ? ? ? 
PRD_900002 H4X    H27 H 0 1 N N N -2.555 24.555 50.950 4.098  0.578  -1.941 GLA 3 H4  polymer 1 1 59 ? ? ? 
PRD_900002 H5X    H23 H 0 1 N N N -2.413 25.337 53.199 2.454  -1.107 -1.207 GLA 3 H5  polymer 1 1 60 ? ? ? 
PRD_900002 H6X    H25 H 0 1 N N N -2.971 22.953 53.012 5.253  -2.310 -1.381 GLA 3 H61 polymer 1 1 61 ? ? ? 
PRD_900002 H6XA   H24 H 0 0 N N N -2.154 23.388 54.552 4.305  -1.749 -2.780 GLA 3 H62 polymer 1 1 62 ? ? ? 
PRD_900002 HO2X   H32 H 0 0 N N N 1.012  27.476 50.223 2.667  1.068  3.236  GLA 3 HO2 polymer 1 1 63 ? ? ? 
PRD_900002 HO3X   H30 H 0 0 N N N -0.380 26.791 49.226 3.716  3.039  0.671  GLA 3 HO3 polymer 1 1 64 ? ? ? 
PRD_900002 HO4X   H28 H 0 0 N N N -0.634 23.570 50.026 6.006  0.910  -0.543 GLA 3 HO4 polymer 1 1 65 ? ? ? 
PRD_900002 HO6X   H26 H 0 0 N N N -1.325 21.472 53.605 3.985  -4.079 -2.365 GLA 3 HO6 polymer 1 1 66 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900002 "O6'" "C6'"  SING N N 1  
PRD_900002 "C6'" "C5'"  SING N N 2  
PRD_900002 "C5'" "O2'"  SING N N 3  
PRD_900002 "C5'" "C4'"  SING N N 4  
PRD_900002 "C4'" "O4'"  SING N N 5  
PRD_900002 "C4'" "C3'"  SING N N 6  
PRD_900002 "C3'" "C2'"  SING N N 7  
PRD_900002 "C3'" "O3'"  SING N N 8  
PRD_900002 "O2'" "C2'"  SING N N 9  
PRD_900002 "C2'" "C1'"  SING N N 10 
PRD_900002 "C2'" O1     SING N N 11 
PRD_900002 "C1'" "O1'"  SING N N 12 
PRD_900002 O1    C1     SING N N 13 
PRD_900002 C1    O5     SING N N 14 
PRD_900002 C1    C2     SING N N 15 
PRD_900002 C2    O2     SING N N 16 
PRD_900002 C2    C3     SING N N 17 
PRD_900002 C3    O3     SING N N 18 
PRD_900002 C3    C4     SING N N 19 
PRD_900002 C4    C5     SING N N 20 
PRD_900002 C4    O4     SING N N 21 
PRD_900002 C5    O5     SING N N 22 
PRD_900002 C5    C6     SING N N 23 
PRD_900002 C6    O6     SING N N 24 
PRD_900002 O6    C1X    SING N N 25 
PRD_900002 C1X   O5X    SING N N 26 
PRD_900002 C1X   C2X    SING N N 27 
PRD_900002 O5X   C5X    SING N N 28 
PRD_900002 C5X   C6X    SING N N 29 
PRD_900002 C5X   C4X    SING N N 30 
PRD_900002 C6X   O6X    SING N N 31 
PRD_900002 C4X   O4X    SING N N 32 
PRD_900002 C4X   C3X    SING N N 33 
PRD_900002 C3X   O3X    SING N N 34 
PRD_900002 C3X   C2X    SING N N 35 
PRD_900002 C2X   O2X    SING N N 36 
PRD_900002 "O6'" "HO6'" SING N N 37 
PRD_900002 "C6'" "H6'"  SING N N 38 
PRD_900002 "C6'" "H6'A" SING N N 39 
PRD_900002 "C5'" "H5'"  SING N N 40 
PRD_900002 "C4'" "H4'"  SING N N 41 
PRD_900002 "O4'" "HO4'" SING N N 42 
PRD_900002 "C3'" "H3'"  SING N N 43 
PRD_900002 "O3'" "HO3'" SING N N 44 
PRD_900002 "C1'" "H1'"  SING N N 45 
PRD_900002 "C1'" "H1'A" SING N N 46 
PRD_900002 "O1'" "HO1'" SING N N 47 
PRD_900002 C1    H1     SING N N 48 
PRD_900002 C2    H2     SING N N 49 
PRD_900002 O2    HO2    SING N N 50 
PRD_900002 C3    H3     SING N N 51 
PRD_900002 O3    HO3    SING N N 52 
PRD_900002 C4    H4     SING N N 53 
PRD_900002 O4    HO4    SING N N 54 
PRD_900002 C5    H5     SING N N 55 
PRD_900002 C6    H6A    SING N N 56 
PRD_900002 C6    H6     SING N N 57 
PRD_900002 C1X   H1X    SING N N 58 
PRD_900002 C5X   H5X    SING N N 59 
PRD_900002 C6X   H6XA   SING N N 60 
PRD_900002 C6X   H6X    SING N N 61 
PRD_900002 O6X   HO6X   SING N N 62 
PRD_900002 C4X   H4X    SING N N 63 
PRD_900002 O4X   HO4X   SING N N 64 
PRD_900002 C3X   H3X    SING N N 65 
PRD_900002 O3X   HO3X   SING N N 66 
PRD_900002 C2X   H2X    SING N N 67 
PRD_900002 O2X   HO2X   SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900002 SMILES           ACDLabs              12.01 "O2C(COC1OC(CO)C(O)C(O)C1O)C(O)C(O)C(O)C2OC3(OC(C(O)C3O)CO)CO"                                                                                                                                           
PRD_900002 InChI            InChI                1.03  
;InChI=1S/C18H32O16/c19-1-5-8(22)11(25)13(27)16(31-5)30-3-7-9(23)12(26)14(28)17(32-7)34-18(4-21)15(29)10(24)6(2-20)33-18
 /h5-17,19-29H,1-4H2/t5-,6-,7-,8+,9-,10-,11+,12+,13-,14-,15+,16+,17-,18+/m1/s1
;
PRD_900002 InChIKey         InChI                1.03  MUPFEKGTMRGPLJ-ZQSKZDJDSA-N                                                                                                                                                                              
PRD_900002 SMILES_CANONICAL CACTVS               3.370 "OC[C@H]1O[C@H](OC[C@H]2O[C@H](O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O"                                                                                 
PRD_900002 SMILES           CACTVS               3.370 "OC[CH]1O[CH](OC[CH]2O[CH](O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"                                                                                                    
PRD_900002 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 
;C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@H](O2)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)O)O)O
 )O)O)O)O
;
PRD_900002 SMILES           "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)OCC2C(C(C(C(O2)OC3(C(C(C(O3)CO)O)O)CO)O)O)O)O)O)O)O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_900002 "SYSTEMATIC NAME" ACDLabs              12.01 "beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside"                                                                                                             
PRD_900002 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;(2S,3R,4S,5R,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2S,3S,4S,5R)-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-3,4,5-tr
 is(oxidanyl)oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
;
# 
