data_PRDCC_000913
# 
_chem_comp.id                                    PRD_000913 
_chem_comp.name                                  "M4Z inhibitor" 
_chem_comp.formula                               "C24 H39 N7 O6" 
_chem_comp.formula_weight                        521.610 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000913 C1  C1  C 0 1 Y N N ?      ?       ?      9.106  0.135  -0.592 02J 1 C4   polymer 1 1 1  ? ? ? 
PRD_000913 C2  C2  C 0 1 Y N N ?      ?       ?      9.900  -0.057 0.487  02J 1 C5   polymer 1 1 2  ? ? ? 
PRD_000913 C3  C3  C 0 1 N N N ?      ?       ?      11.404 0.022  0.523  02J 1 C6   polymer 1 1 3  ? ? ? 
PRD_000913 O1  O1  O 0 1 Y N N ?      ?       ?      9.088  -0.333 1.517  02J 1 O1   polymer 1 1 4  ? ? ? 
PRD_000913 N1  N1  N 0 1 Y N N ?      ?       ?      7.925  -0.327 1.187  02J 1 N    polymer 1 1 5  ? ? ? 
PRD_000913 C4  C4  C 0 1 Y N N ?      ?       ?      7.789  -0.047 -0.085 02J 1 CA   polymer 1 1 6  ? ? ? 
PRD_000913 C5  C5  C 0 1 N N N ?      ?       ?      6.520  0.051  -0.846 02J 1 C    polymer 1 1 7  ? ? ? 
PRD_000913 O2  O2  O 0 1 N N N ?      ?       ?      6.541  0.311  -2.032 02J 1 O    polymer 1 1 8  ? ? ? 
PRD_000913 N2  N2  N 0 1 N N N -1.942 -20.268 36.473 5.342  -0.150 -0.221 ALA 2 N    polymer 1 1 9  ? ? ? 
PRD_000913 C6  C6  C 0 1 N N S -1.956 -18.817 36.568 4.089  -0.053 -0.973 ALA 2 CA   polymer 1 1 10 ? ? ? 
PRD_000913 C7  C7  C 0 1 N N N -1.149 -18.353 37.752 2.964  0.296  -0.032 ALA 2 C    polymer 1 1 11 ? ? ? 
PRD_000913 O3  O3  O 0 1 N N N -1.221 -18.944 38.817 3.188  0.449  1.150  ALA 2 O    polymer 1 1 12 ? ? ? 
PRD_000913 C8  C8  C 0 1 N N N -3.389 -18.308 36.712 3.793  -1.395 -1.645 ALA 2 CB   polymer 1 1 13 ? ? ? 
PRD_000913 N3  N3  N 0 1 N N N -0.385 -17.273 37.574 1.710  0.437  -0.504 VAL 3 N    polymer 1 1 14 ? ? ? 
PRD_000913 C9  C9  C 0 1 N N S 0.435  -16.717 38.646 0.617  0.776  0.411  VAL 3 CA   polymer 1 1 15 ? ? ? 
PRD_000913 C10 C10 C 0 1 N N N 0.222  -15.231 38.765 -0.689 0.293  -0.165 VAL 3 C    polymer 1 1 16 ? ? ? 
PRD_000913 O4  O4  O 0 1 N N N 0.419  -14.500 37.808 -0.778 0.058  -1.352 VAL 3 O    polymer 1 1 17 ? ? ? 
PRD_000913 C11 C11 C 0 1 N N N 1.879  -16.965 38.209 0.561  2.294  0.599  VAL 3 CB   polymer 1 1 18 ? ? ? 
PRD_000913 C12 C12 C 0 1 N N N 2.855  -16.137 39.035 1.847  2.772  1.276  VAL 3 CG1  polymer 1 1 19 ? ? ? 
PRD_000913 C13 C13 C 0 1 N N N 2.249  -18.447 38.253 0.421  2.971  -0.766 VAL 3 CG2  polymer 1 1 20 ? ? ? 
PRD_000913 N4  N4  N 0 1 N N N -0.178 -14.746 39.939 -1.758 0.122  0.638  LEU 4 N    polymer 1 1 21 ? ? ? 
PRD_000913 C14 C14 C 0 1 N N S -0.388 -13.307 40.103 -2.999 -0.435 0.096  LEU 4 CA   polymer 1 1 22 ? ? ? 
PRD_000913 C15 C15 C 0 1 N N N 0.927  -12.576 40.194 -4.164 0.021  0.936  LEU 4 C    polymer 1 1 23 ? ? ? 
PRD_000913 O5  O5  O 0 1 N N N 1.564  -12.515 41.238 -3.975 0.742  1.893  LEU 4 O    polymer 1 1 24 ? ? ? 
PRD_000913 C16 C16 C 0 1 N N N -1.212 -13.156 41.376 -2.924 -1.963 0.116  LEU 4 CB   polymer 1 1 25 ? ? ? 
PRD_000913 C17 C17 C 0 1 N N N -2.678 -13.507 41.103 -1.821 -2.432 -0.834 LEU 4 CG   polymer 1 1 26 ? ? ? 
PRD_000913 C18 C18 C 0 1 N N N -3.583 -12.681 42.001 -1.661 -3.950 -0.721 LEU 4 CD1  polymer 1 1 27 ? ? ? 
PRD_000913 C19 C19 C 0 1 N N N -3.089 -13.298 39.643 -2.196 -2.065 -2.272 LEU 4 CD2  polymer 1 1 28 ? ? ? 
PRD_000913 C20 C20 C 0 1 N N N 2.582  -9.831  39.223 -6.708 -0.850 2.621  0JU 5 C    polymer 1 1 29 ? ? ? 
PRD_000913 N5  N5  N 0 1 N N N 3.588  -9.338  39.799 -5.909 -1.838 2.773  0JU 5 NF   polymer 1 1 30 ? ? ? 
PRD_000913 C21 C21 C 0 1 N N S 2.600  -11.301 38.914 -6.547 0.073  1.441  0JU 5 CA   polymer 1 1 31 ? ? ? 
PRD_000913 N6  N6  N 0 1 N N N 1.337  -12.020 39.059 -5.415 -0.371 0.624  0JU 5 N    polymer 1 1 32 ? ? ? 
PRD_000913 C22 C22 C 0 1 N N N 2.880  -11.469 37.428 -7.824 0.051  0.598  0JU 5 CB   polymer 1 1 33 ? ? ? 
PRD_000913 C23 C23 C 0 1 N N N 4.340  -11.808 37.189 -7.710 1.079  -0.529 0JU 5 CG   polymer 1 1 34 ? ? ? 
PRD_000913 C24 C24 C 0 1 N N N 4.475  -12.189 35.740 -8.968 1.057  -1.359 0JU 5 CD   polymer 1 1 35 ? ? ? 
PRD_000913 O6  O6  O 0 1 N N N 3.704  -11.723 34.906 -9.867 0.293  -1.077 0JU 5 OE   polymer 1 1 36 ? ? ? 
PRD_000913 N7  N7  N 0 1 N N N 5.457  -13.045 35.456 -9.093 1.885  -2.415 0JU 5 NE   polymer 1 1 37 ? ? ? 
PRD_000913 H1  H1  H 0 1 N N N ?      ?       ?      9.403  0.376  -1.602 02J 1 H4   polymer 1 1 38 ? ? ? 
PRD_000913 H2  H2  H 0 1 N N N ?      ?       ?      11.709 1.043  0.754  02J 1 H6   polymer 1 1 39 ? ? ? 
PRD_000913 H3  H3  H 0 1 N N N ?      ?       ?      11.785 -0.653 1.290  02J 1 H6A  polymer 1 1 40 ? ? ? 
PRD_000913 H4  H4  H 0 1 N N N ?      ?       ?      11.807 -0.267 -0.448 02J 1 H6B  polymer 1 1 41 ? ? ? 
PRD_000913 H5  H5  H 0 1 N N N -1.964 -21.146 36.951 5.325  -0.358 0.726  ALA 2 H    polymer 1 1 42 ? ? ? 
PRD_000913 H6  H6  H 0 1 N N N -1.523 -18.386 35.654 4.180  0.722  -1.733 ALA 2 HA   polymer 1 1 43 ? ? ? 
PRD_000913 H7  H7  H 0 1 N N N -3.383 -17.210 36.783 2.860  -1.324 -2.205 ALA 2 HB1  polymer 1 1 44 ? ? ? 
PRD_000913 H8  H8  H 0 1 N N N -3.977 -18.616 35.835 4.606  -1.648 -2.326 ALA 2 HB2  polymer 1 1 45 ? ? ? 
PRD_000913 H9  H9  H 0 1 N N N -3.839 -18.732 37.622 3.702  -2.171 -0.885 ALA 2 HB3  polymer 1 1 46 ? ? ? 
PRD_000913 H10 H10 H 0 1 N N N -0.374 -16.831 36.677 1.531  0.315  -1.449 VAL 3 H    polymer 1 1 47 ? ? ? 
PRD_000913 H11 H11 H 0 1 N N N 0.234  -17.217 39.605 0.788  0.297  1.375  VAL 3 HA   polymer 1 1 48 ? ? ? 
PRD_000913 H12 H12 H 0 1 N N N 1.968  -16.634 37.164 -0.295 2.552  1.222  VAL 3 HB   polymer 1 1 49 ? ? ? 
PRD_000913 H13 H13 H 0 0 N N N 3.883  -16.337 38.698 2.692  2.608  0.608  VAL 3 HG11 polymer 1 1 50 ? ? ? 
PRD_000913 H14 H14 H 0 0 N N N 2.628  -15.068 38.907 1.765  3.835  1.503  VAL 3 HG12 polymer 1 1 51 ? ? ? 
PRD_000913 H15 H15 H 0 0 N N N 2.758  -16.408 40.097 2.000  2.214  2.200  VAL 3 HG13 polymer 1 1 52 ? ? ? 
PRD_000913 H16 H16 H 0 0 N N N 3.293  -18.574 37.931 -0.495 2.631  -1.249 VAL 3 HG21 polymer 1 1 53 ? ? ? 
PRD_000913 H17 H17 H 0 0 N N N 2.133  -18.823 39.280 0.381  4.053  -0.632 VAL 3 HG22 polymer 1 1 54 ? ? ? 
PRD_000913 H18 H18 H 0 0 N N N 1.587  -19.010 37.579 1.278  2.714  -1.389 VAL 3 HG23 polymer 1 1 55 ? ? ? 
PRD_000913 H19 H19 H 0 1 N N N -0.335 -15.365 40.708 -1.705 0.368  1.574  LEU 4 H    polymer 1 1 56 ? ? ? 
PRD_000913 H20 H20 H 0 1 N N N -0.965 -12.914 39.253 -3.135 -0.092 -0.930 LEU 4 HA   polymer 1 1 57 ? ? ? 
PRD_000913 H21 H21 H 0 1 N N N -0.815 -13.831 42.148 -2.700 -2.303 1.128  LEU 4 HB2  polymer 1 1 58 ? ? ? 
PRD_000913 H22 H22 H 0 1 N N N -1.147 -12.116 41.729 -3.880 -2.379 -0.203 LEU 4 HB3  polymer 1 1 59 ? ? ? 
PRD_000913 H23 H23 H 0 1 N N N -2.826 -14.569 41.350 -0.881 -1.947 -0.569 LEU 4 HG   polymer 1 1 60 ? ? ? 
PRD_000913 H24 H24 H 0 0 N N N -4.633 -12.938 41.800 -2.600 -4.435 -0.987 LEU 4 HD11 polymer 1 1 61 ? ? ? 
PRD_000913 H25 H25 H 0 0 N N N -3.349 -12.895 43.054 -0.875 -4.284 -1.398 LEU 4 HD12 polymer 1 1 62 ? ? ? 
PRD_000913 H26 H26 H 0 0 N N N -3.422 -11.612 41.800 -1.394 -4.212 0.303  LEU 4 HD13 polymer 1 1 63 ? ? ? 
PRD_000913 H27 H27 H 0 0 N N N -4.148 -13.568 39.517 -2.310 -0.984 -2.352 LEU 4 HD21 polymer 1 1 64 ? ? ? 
PRD_000913 H28 H28 H 0 0 N N N -2.944 -12.243 39.369 -1.410 -2.399 -2.949 LEU 4 HD22 polymer 1 1 65 ? ? ? 
PRD_000913 H29 H29 H 0 0 N N N -2.470 -13.934 38.993 -3.135 -2.550 -2.537 LEU 4 HD23 polymer 1 1 66 ? ? ? 
PRD_000913 H30 H30 H 0 1 N Y N 1.734  -9.217  38.960 -7.497 -0.677 3.338  0JU 5 H1   polymer 1 1 67 ? ? ? 
PRD_000913 H31 H31 H 0 1 N N N 3.483  -8.357  39.962 -6.012 -2.432 3.533  0JU 5 HNF  polymer 1 1 68 ? ? ? 
PRD_000913 H32 H32 H 0 1 N N N 3.392  -11.795 39.496 -6.364 1.088  1.795  0JU 5 HA   polymer 1 1 69 ? ? ? 
PRD_000913 H33 H33 H 0 1 N N N 0.746  -12.098 38.256 -5.566 -0.947 -0.142 0JU 5 H    polymer 1 1 70 ? ? ? 
PRD_000913 H34 H34 H 0 1 N N N 2.638  -10.531 36.907 -7.960 -0.943 0.171  0JU 5 H7   polymer 1 1 71 ? ? ? 
PRD_000913 H35 H35 H 0 1 N N N 2.252  -12.281 37.032 -8.679 0.295  1.228  0JU 5 H8   polymer 1 1 72 ? ? ? 
PRD_000913 H36 H36 H 0 1 N N N 4.642  -12.650 37.830 -7.574 2.073  -0.102 0JU 5 H9   polymer 1 1 73 ? ? ? 
PRD_000913 H37 H37 H 0 1 N N N 4.971  -10.934 37.410 -6.854 0.835  -1.159 0JU 5 H10  polymer 1 1 74 ? ? ? 
PRD_000913 H38 H38 H 0 1 N N N 5.601  -13.346 34.513 -8.374 2.496  -2.640 0JU 5 H11  polymer 1 1 75 ? ? ? 
PRD_000913 H39 H39 H 0 1 N N N 6.050  -13.386 36.186 -9.903 1.870  -2.949 0JU 5 H12  polymer 1 1 76 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000913 C4  C1  SING Y N 1  
PRD_000913 C1  C2  DOUB Y N 2  
PRD_000913 C1  H1  SING N N 3  
PRD_000913 O1  C2  SING Y N 4  
PRD_000913 C2  C3  SING N N 5  
PRD_000913 C3  H2  SING N N 6  
PRD_000913 C3  H3  SING N N 7  
PRD_000913 C3  H4  SING N N 8  
PRD_000913 N1  O1  SING Y N 9  
PRD_000913 C4  N1  DOUB Y N 10 
PRD_000913 C5  C4  SING N N 11 
PRD_000913 O2  C5  DOUB N N 12 
PRD_000913 N2  C6  SING N N 13 
PRD_000913 N2  H5  SING N N 14 
PRD_000913 C6  C7  SING N N 15 
PRD_000913 C6  C8  SING N N 16 
PRD_000913 C6  H6  SING N N 17 
PRD_000913 C7  O3  DOUB N N 18 
PRD_000913 C8  H7  SING N N 19 
PRD_000913 C8  H8  SING N N 20 
PRD_000913 C8  H9  SING N N 21 
PRD_000913 N3  C9  SING N N 22 
PRD_000913 N3  H10 SING N N 23 
PRD_000913 C9  C10 SING N N 24 
PRD_000913 C9  C11 SING N N 25 
PRD_000913 C9  H11 SING N N 26 
PRD_000913 C10 O4  DOUB N N 27 
PRD_000913 C11 C12 SING N N 28 
PRD_000913 C11 C13 SING N N 29 
PRD_000913 C11 H12 SING N N 30 
PRD_000913 C12 H13 SING N N 31 
PRD_000913 C12 H14 SING N N 32 
PRD_000913 C12 H15 SING N N 33 
PRD_000913 C13 H16 SING N N 34 
PRD_000913 C13 H17 SING N N 35 
PRD_000913 C13 H18 SING N N 36 
PRD_000913 N4  C14 SING N N 37 
PRD_000913 N4  H19 SING N N 38 
PRD_000913 C14 C15 SING N N 39 
PRD_000913 C14 C16 SING N N 40 
PRD_000913 C14 H20 SING N N 41 
PRD_000913 C15 O5  DOUB N N 42 
PRD_000913 C16 C17 SING N N 43 
PRD_000913 C16 H21 SING N N 44 
PRD_000913 C16 H22 SING N N 45 
PRD_000913 C17 C18 SING N N 46 
PRD_000913 C17 C19 SING N N 47 
PRD_000913 C17 H23 SING N N 48 
PRD_000913 C18 H24 SING N N 49 
PRD_000913 C18 H25 SING N N 50 
PRD_000913 C18 H26 SING N N 51 
PRD_000913 C19 H27 SING N N 52 
PRD_000913 C19 H28 SING N N 53 
PRD_000913 C19 H29 SING N N 54 
PRD_000913 O6  C24 DOUB N N 55 
PRD_000913 N7  C24 SING N N 56 
PRD_000913 C24 C23 SING N N 57 
PRD_000913 C23 C22 SING N N 58 
PRD_000913 C22 C21 SING N N 59 
PRD_000913 C21 N6  SING N N 60 
PRD_000913 C21 C20 SING N N 61 
PRD_000913 C20 N5  DOUB N N 62 
PRD_000913 C20 H30 SING N N 63 
PRD_000913 N5  H31 SING N N 64 
PRD_000913 C21 H32 SING N N 65 
PRD_000913 N6  H33 SING N N 66 
PRD_000913 C22 H34 SING N N 67 
PRD_000913 C22 H35 SING N N 68 
PRD_000913 C23 H36 SING N N 69 
PRD_000913 C23 H37 SING N N 70 
PRD_000913 N7  H38 SING N N 71 
PRD_000913 N7  H39 SING N N 72 
PRD_000913 C5  N2  SING N N 73 
PRD_000913 C7  N3  SING N N 74 
PRD_000913 C10 N4  SING N N 75 
PRD_000913 C15 N6  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000913 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)NC(C(=O)NC(C(=O)NC(C=[N@H])CCC(=O)N)CC(C)C)C(C)C)C)c1noc(c1)C"                                                                                                                                                                   
PRD_000913 InChI            InChI                1.03  "InChI=1S/C24H39N7O6/c1-12(2)9-17(22(34)28-16(11-25)7-8-19(26)32)29-24(36)20(13(3)4)30-21(33)15(6)27-23(35)18-10-14(5)37-31-18/h10-13,15-17,20,25H,7-9H2,1-6H3,(H2,26,32)(H,27,35)(H,28,34)(H,29,36)(H,30,33)/b25-11+/t15-,16+,17-,20+/m0/s1" 
PRD_000913 InChIKey         InChI                1.03  BEDKZMYJXHXMQM-XELNVQSUSA-N                                                                                                                                                                                                                   
PRD_000913 SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)c1cc(C)on1)C(C)C)C(=O)N[C@@H](CCC(N)=O)C=N"                                                                                                                                                     
PRD_000913 SMILES           CACTVS               3.370 "CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](C)NC(=O)c1cc(C)on1)C(C)C)C(=O)N[CH](CCC(N)=O)C=N"                                                                                                                                                           
PRD_000913 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(no1)C(=O)N[C@@H](C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)N)C=N"                                                                                                                                                   
PRD_000913 SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1cc(no1)C(=O)NC(C)C(=O)NC(C(C)C)C(=O)NC(CC(C)C)C(=O)NC(CCC(=O)N)C=N"                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000913 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(5-methyl-1,2-oxazol-3-yl)carbonyl]-L-alanyl-L-valyl-N-[(2R)-5-amino-1-imino-5-oxopentan-2-yl]-L-leucinamide"                                                                                                                                     
PRD_000913 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-5-azanyl-1-azanylidene-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide" 
# 
