data_PRDCC_900033
# 
_chem_comp.id                                    PRD_900033 
_chem_comp.name                                  "METHYL-2-S-(ALPHA-D-MANNOPYRANOSYL)-2-THIO-ALPHA-D-MANNOPYRANOSIDE" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C13 H24 O10 S" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        372.389 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900033 S22  S22  S 0 1 N N N 2.759  -5.803  -0.496 0.027  -1.476 0.271  S2  Z5L 1  1 1 polymer 1 ? ? ? 
PRD_900033 C22  C22  C 0 1 N N S 2.918  -7.077  0.784  -0.993 -0.692 -1.008 C2  Z5L 2  1 1 polymer 1 ? ? ? 
PRD_900033 C21  C21  C 0 1 N N S 3.993  -8.069  0.411  -1.207 0.783  -0.662 C1  Z5L 3  1 1 polymer 1 ? ? ? 
PRD_900033 O21  O21  O 0 1 N N N 4.209  -8.893  1.557  -2.035 1.389  -1.656 O1  Z5L 4  1 1 polymer 1 ? ? ? 
PRD_900033 C27  C27  C 0 1 N N N 5.377  -9.728  1.466  -2.003 2.798  -1.418 C1M Z5L 5  1 1 polymer 1 ? ? ? 
PRD_900033 O25  O25  O 0 1 N N N 3.592  -8.831  -0.720 -1.838 0.893  0.612  O5  Z5L 6  1 1 polymer 1 ? ? ? 
PRD_900033 C23  C23  C 0 1 N N S 1.611  -7.844  1.050  -2.353 -1.392 -1.079 C3  Z5L 7  1 1 polymer 1 ? ? ? 
PRD_900033 O23  O23  O 0 1 N N N 0.589  -6.898  1.339  -2.165 -2.798 -1.253 O3  Z5L 8  1 1 polymer 1 ? ? ? 
PRD_900033 C24  C24  C 0 1 N N S 1.225  -8.756  -0.126 -3.106 -1.132 0.231  C4  Z5L 9  1 1 polymer 1 ? ? ? 
PRD_900033 O24  O24  O 0 1 N N N 0.158  -9.646  0.278  -4.435 -1.649 0.131  O4  Z5L 10 1 1 polymer 1 ? ? ? 
PRD_900033 C25  C25  C 0 1 N N R 2.393  -9.621  -0.554 -3.161 0.376  0.484  C5  Z5L 11 1 1 polymer 1 ? ? ? 
PRD_900033 C26  C26  C 0 1 N N N 2.071  -10.262 -1.885 -3.940 0.646  1.773  C6  Z5L 12 1 1 polymer 1 ? ? ? 
PRD_900033 O26  O26  O 0 1 N N N 3.033  -11.285 -2.161 -4.099 2.055  1.947  O6  Z5L 13 1 1 polymer 1 ? ? ? 
PRD_900033 C11  C11  C 0 1 N N R 1.967  -4.366  0.314  1.583  -0.576 0.029  C1  MAN 14 2 1 polymer 1 ? ? ? 
PRD_900033 C12  C12  C 0 1 N N S 1.425  -3.472  -0.762 2.691  -1.246 0.844  C2  MAN 15 2 1 polymer 1 ? ? ? 
PRD_900033 C13  C13  C 0 1 N N S 1.915  -2.055  -0.693 4.008  -0.500 0.605  C3  MAN 16 2 1 polymer 1 ? ? ? 
PRD_900033 C14  C14  C 0 1 N N S 3.407  -1.986  -0.468 3.789  0.988  0.905  C4  MAN 17 2 1 polymer 1 ? ? ? 
PRD_900033 C15  C15  C 0 1 N N R 3.757  -2.686  0.838  2.597  1.490  0.086  C5  MAN 18 2 1 polymer 1 ? ? ? 
PRD_900033 C16  C16  C 0 1 N N N 3.843  -1.644  1.953  2.876  1.273  -1.402 C6  MAN 19 2 1 polymer 1 ? ? ? 
PRD_900033 O12  O12  O 0 1 N N N -0.004 -3.449  -0.670 2.831  -2.607 0.431  O2  MAN 20 2 1 polymer 1 ? ? ? 
PRD_900033 O13  O13  O 0 1 N N N 1.267  -1.342  0.398  4.416  -0.660 -0.755 O3  MAN 21 2 1 polymer 1 ? ? ? 
PRD_900033 O14  O14  O 0 1 N N N 4.093  -2.518  -1.627 3.520  1.162  2.297  O4  MAN 22 2 1 polymer 1 ? ? ? 
PRD_900033 O15  O15  O 0 1 N N N 2.779  -3.650  1.277  1.420  0.775  0.457  O5  MAN 23 2 1 polymer 1 ? ? ? 
PRD_900033 O16  O16  O 0 1 N N N 4.094  -2.242  3.206  1.803  1.818  -2.173 O6  MAN 24 2 1 polymer 1 ? ? ? 
PRD_900033 H22  H22  H 0 1 N N N 3.188  -6.534  1.720  -0.492 -0.770 -1.973 H2  Z5L 25 1 1 polymer 1 ? ? ? 
PRD_900033 H21  H21  H 0 1 N N N 4.941  -7.556  0.125  -0.243 1.292  -0.634 H1  Z5L 26 1 1 polymer 1 ? ? ? 
PRD_900033 H271 1H27 H 0 0 N N N 6.282  -9.113  1.250  -0.977 3.157  -1.498 H31 Z5L 27 1 1 polymer 1 ? ? ? 
PRD_900033 H272 2H27 H 0 0 N N N 5.546  -10.371 2.361  -2.624 3.305  -2.156 H32 Z5L 28 1 1 polymer 1 ? ? ? 
PRD_900033 H273 3H27 H 0 0 N N N 5.344  -10.347 0.539  -2.384 3.006  -0.418 H33 Z5L 29 1 1 polymer 1 ? ? ? 
PRD_900033 H23  H23  H 0 1 N N N 1.754  -8.522  1.923  -2.927 -0.993 -1.916 H3  Z5L 30 1 1 polymer 1 ? ? ? 
PRD_900033 H2   H2   H 0 1 N N N -0.218 -7.372  1.503  -3.046 -3.197 -1.280 HO3 Z5L 31 1 1 polymer 1 ? ? ? 
PRD_900033 H24  H24  H 0 1 N N N 0.910  -8.099  -0.970 -2.585 -1.622 1.054  H4  Z5L 32 1 1 polymer 1 ? ? ? 
PRD_900033 H1   H1   H 0 1 N N N -0.080 -10.209 -0.449 -4.873 -1.459 0.972  HO4 Z5L 33 1 1 polymer 1 ? ? ? 
PRD_900033 H25  H25  H 0 1 N N N 2.564  -10.389 0.236  -3.662 0.865  -0.351 H5  Z5L 34 1 1 polymer 1 ? ? ? 
PRD_900033 H261 1H26 H 0 0 N N N 2.001  -9.514  -2.709 -4.921 0.174  1.711  H61 Z5L 35 1 1 polymer 1 ? ? ? 
PRD_900033 H262 2H26 H 0 0 N N N 1.024  -10.643 -1.929 -3.393 0.235  2.621  H62 Z5L 36 1 1 polymer 1 ? ? ? 
PRD_900033 H26  H26  H 0 1 N N N 2.831  -11.688 -2.997 -4.594 2.181  2.768  HO6 Z5L 37 1 1 polymer 1 ? ? ? 
PRD_900033 H11  H11  H 0 1 N N N 1.147  -4.762  0.957  1.850  -0.591 -1.027 H1  MAN 38 2 1 polymer 1 ? ? ? 
PRD_900033 H12  H12  H 0 1 N N N 1.787  -3.897  -1.727 2.439  -1.211 1.904  H2  MAN 39 2 1 polymer 1 ? ? ? 
PRD_900033 H13  H13  H 0 1 N N N 1.667  -1.585  -1.673 4.778  -0.896 1.267  H3  MAN 40 2 1 polymer 1 ? ? ? 
PRD_900033 H14  H14  H 0 1 N N N 3.751  -0.931  -0.357 4.682  1.550  0.632  H4  MAN 41 2 1 polymer 1 ? ? ? 
PRD_900033 H15  H15  H 0 1 N N N 4.716  -3.218  0.640  2.450  2.553  0.276  H5  MAN 42 2 1 polymer 1 ? ? ? 
PRD_900033 H161 1H16 H 0 0 N N N 2.931  -1.004  1.983  3.808  1.770  -1.674 H61 MAN 43 2 1 polymer 1 ? ? ? 
PRD_900033 H162 2H16 H 0 0 N N N 4.599  -0.858  1.718  2.962  0.205  -1.604 H62 MAN 44 2 1 polymer 1 ? ? ? 
PRD_900033 H5   H5   H 0 1 N N N -0.314 -4.346  -0.714 1.982  -3.039 0.598  HO2 MAN 45 2 1 polymer 1 ? ? ? 
PRD_900033 H4   H4   H 0 1 N N N 1.577  -0.445  0.442  4.542  -1.608 -0.899 HO3 MAN 46 2 1 polymer 1 ? ? ? 
PRD_900033 H3   H3   H 0 1 N N N 5.031  -2.475  -1.485 4.294  0.834  2.775  HO4 MAN 47 2 1 polymer 1 ? ? ? 
PRD_900033 H16  H16  H 0 1 N N N 4.147  -1.594  3.899  2.018  1.660  -3.102 HO6 MAN 48 2 1 polymer 1 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900033 O12 C12  SING N N 1  
PRD_900033 O12 H5   SING N N 2  
PRD_900033 C12 C13  SING N N 3  
PRD_900033 C12 C11  SING N N 4  
PRD_900033 C12 H12  SING N N 5  
PRD_900033 C13 O13  SING N N 6  
PRD_900033 C13 C14  SING N N 7  
PRD_900033 C13 H13  SING N N 8  
PRD_900033 O13 H4   SING N N 9  
PRD_900033 C14 O14  SING N N 10 
PRD_900033 C14 C15  SING N N 11 
PRD_900033 C14 H14  SING N N 12 
PRD_900033 O14 H3   SING N N 13 
PRD_900033 C15 C16  SING N N 14 
PRD_900033 C15 O15  SING N N 15 
PRD_900033 C15 H15  SING N N 16 
PRD_900033 C16 O16  SING N N 17 
PRD_900033 C16 H161 SING N N 18 
PRD_900033 C16 H162 SING N N 19 
PRD_900033 O16 H16  SING N N 20 
PRD_900033 O15 C11  SING N N 21 
PRD_900033 C11 S22  SING N N 22 
PRD_900033 C11 H11  SING N N 23 
PRD_900033 S22 C22  SING N N 24 
PRD_900033 C22 C21  SING N N 25 
PRD_900033 C22 C23  SING N N 26 
PRD_900033 C22 H22  SING N N 27 
PRD_900033 C21 O21  SING N N 28 
PRD_900033 C21 O25  SING N N 29 
PRD_900033 C21 H21  SING N N 30 
PRD_900033 O21 C27  SING N N 31 
PRD_900033 C27 H271 SING N N 32 
PRD_900033 C27 H272 SING N N 33 
PRD_900033 C27 H273 SING N N 34 
PRD_900033 O25 C25  SING N N 35 
PRD_900033 C23 O23  SING N N 36 
PRD_900033 C23 C24  SING N N 37 
PRD_900033 C23 H23  SING N N 38 
PRD_900033 O23 H2   SING N N 39 
PRD_900033 C24 O24  SING N N 40 
PRD_900033 C24 C25  SING N N 41 
PRD_900033 C24 H24  SING N N 42 
PRD_900033 O24 H1   SING N N 43 
PRD_900033 C25 C26  SING N N 44 
PRD_900033 C25 H25  SING N N 45 
PRD_900033 C26 O26  SING N N 46 
PRD_900033 C26 H261 SING N N 47 
PRD_900033 C26 H262 SING N N 48 
PRD_900033 O26 H26  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900033 SMILES           ACDLabs              10.04 "S(C1C(OC)OC(CO)C(O)C1O)C2OC(C(O)C(O)C2O)CO"                                                                                                           
PRD_900033 SMILES_CANONICAL CACTVS               3.341 "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1S[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O"                                                                 
PRD_900033 SMILES           CACTVS               3.341 "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O"                                                                               
PRD_900033 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)S[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"                                                             
PRD_900033 SMILES           "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(C(O1)CO)O)O)SC2C(C(C(C(O2)CO)O)O)O"                                                                                                         
PRD_900033 InChI            InChI                1.03  
;InChI=1S/C13H24O10S/c1-21-12-11(9(19)7(17)4(2-14)22-12)24-13-10(20)8(18)6(16)5(3-15)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7-
,8+,9+,10+,11+,12+,13-/m1/s1
;
PRD_900033 InChIKey         InChI                1.03  WAYOKHSZGNFKSX-ZEEOCKJESA-N                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_900033 "SYSTEMATIC NAME" ACDLabs              10.04 "methyl 2-S-alpha-D-mannopyranosyl-2-thio-alpha-D-mannopyranoside"                                                                      
PRD_900033 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 
;(2R,3S,4S,5S,6R)-2-[(2S,3S,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-methoxy-oxan-3-yl]sulfanyl-6-(hydroxymethyl)oxan
e-3,4,5-triol
;
# 
