data_PRDCC_002506
# 
_chem_comp.id                                    PRD_002506 
_chem_comp.name                                  "Agrocinopine C-like (D-glucos-2-yl sucros-4-yl phosphate; alpha-D-glucose form)" 
_chem_comp.formula                               "C18 H33 O19 P" 
_chem_comp.formula_weight                        584.417 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002506 C1  C1  C 0 1 N N S 9.698  -0.727 -11.877 -3.619 -1.655 -0.645 GLC 1 C1  polymer     1 1 1  ? ? ? 
PRD_002506 C2  C2  C 0 1 N N R 10.219 -2.053 -11.361 -2.714 -2.860 -0.371 GLC 1 C2  polymer     1 1 2  ? ? ? 
PRD_002506 C3  C3  C 0 1 N N S 11.656 -2.242 -11.824 -1.411 -2.374 0.271  GLC 1 C3  polymer     1 1 3  ? ? ? 
PRD_002506 C4  C4  C 0 1 N N S 11.723 -2.170 -13.349 -0.750 -1.349 -0.656 GLC 1 C4  polymer     1 1 4  ? ? ? 
PRD_002506 C5  C5  C 0 1 N N R 11.127 -0.850 -13.826 -1.730 -0.203 -0.919 GLC 1 C5  polymer     1 1 5  ? ? ? 
PRD_002506 C6  C6  C 0 1 N N N 11.024 -0.769 -15.332 -1.100 0.795  -1.892 GLC 1 C6  polymer     1 1 6  ? ? ? 
PRD_002506 O1  O1  O 0 1 N N N 10.135 -2.065 -9.935  -3.377 -3.762 0.517  GLC 1 O2  polymer     1 1 7  ? ? ? 
PRD_002506 O2  O2  O 0 1 N N N 12.147 -3.499 -11.373 -0.531 -3.483 0.463  GLC 1 O3  polymer     1 1 8  ? ? ? 
PRD_002506 O3  O3  O 0 1 N N N 13.142 -1.948 -13.558 0.430  -0.835 -0.035 GLC 1 O4  polymer     1 1 9  ? ? ? 
PRD_002506 O4  O4  O 0 1 N N N 9.792  -0.694 -13.307 -2.932 -0.727 -1.487 GLC 1 O5  polymer     1 1 10 ? ? ? 
PRD_002506 O5  O5  O 0 1 N N N 9.825  -1.375 -15.815 -1.965 1.921  -2.047 GLC 1 O6  polymer     1 1 11 ? ? ? 
PRD_002506 C7  C7  C 0 1 N N N 9.010  1.213  -9.210  -6.212 -0.618 -0.193 FRU 2 C1  polymer     1 1 12 ? ? ? 
PRD_002506 C8  C8  C 0 1 N N R 9.894  1.479  -10.417 -4.970 -0.022 0.473  FRU 2 C2  polymer     1 1 13 ? ? ? 
PRD_002506 C9  C9  C 0 1 N N S 10.943 2.592  -10.216 -5.334 0.521  1.869  FRU 2 C3  polymer     1 1 14 ? ? ? 
PRD_002506 C10 C10 C 0 1 N N S 10.938 3.271  -11.589 -5.052 2.040  1.771  FRU 2 C4  polymer     1 1 15 ? ? ? 
PRD_002506 C11 C11 C 0 1 N N R 9.511  3.090  -12.101 -5.090 2.279  0.240  FRU 2 C5  polymer     1 1 16 ? ? ? 
PRD_002506 C12 C12 C 0 1 N N N 9.364  2.933  -13.599 -4.271 3.517  -0.132 FRU 2 C6  polymer     1 1 17 ? ? ? 
PRD_002506 O6  O6  O 0 1 N N N 9.712  0.513  -8.194  -5.910 -0.954 -1.549 FRU 2 O1  polymer     1 1 18 ? ? ? 
PRD_002506 O7  O7  O 0 1 N Y N 10.417 0.321  -11.238 -3.954 -1.020 0.590  FRU 2 O2  polymer     1 1 19 ? ? ? 
PRD_002506 O8  O8  O 0 1 N N N 12.213 2.068  -9.832  -4.508 -0.078 2.870  FRU 2 O3  polymer     1 1 20 ? ? ? 
PRD_002506 O9  O9  O 0 1 N N N 11.282 4.645  -11.466 -6.073 2.792  2.430  FRU 2 O4  polymer     1 1 21 ? ? ? 
PRD_002506 O10 O10 O 0 1 N N N 9.026  1.903  -11.468 -4.483 1.086  -0.302 FRU 2 O5  polymer     1 1 22 ? ? ? 
PRD_002506 O11 O11 O 0 1 N N N 7.991  2.859  -13.974 -4.417 3.782  -1.529 FRU 2 O6  polymer     1 1 23 ? ? ? 
PRD_002506 C13 C13 C 0 1 N N S 16.502 -1.348 -16.799 4.667  1.464  -0.292 ALX 3 C1  non-polymer 2 2 24 ? ? ? 
PRD_002506 O12 O12 O 0 1 N Y N 15.880 -1.825 -18.030 4.378  2.134  0.936  ALX 3 O1  non-polymer 2 2 25 ? ? ? 
PRD_002506 O13 O13 O 0 1 N N N 14.388 -1.899 -15.799 2.962  -0.175 0.216  ALX 3 O2  non-polymer 2 2 26 ? ? ? 
PRD_002506 C14 C14 C 0 1 N N R 15.422 -0.912 -15.866 4.335  -0.024 -0.152 ALX 3 C2  non-polymer 2 2 27 ? ? ? 
PRD_002506 C15 C15 C 0 1 N N S 14.750 0.342  -16.385 5.226  -0.638 0.932  ALX 3 C3  non-polymer 2 2 28 ? ? ? 
PRD_002506 C16 C16 C 0 1 N N R 16.774 0.881  -17.715 6.935  1.101  0.397  ALX 3 C5  non-polymer 2 2 29 ? ? ? 
PRD_002506 C17 C17 C 0 1 N N N 17.847 1.888  -18.104 8.385  1.341  -0.029 ALX 3 C6  non-polymer 2 2 30 ? ? ? 
PRD_002506 P1  P1  P 0 1 N N N 14.117 -2.817 -14.550 1.896  -0.978 -0.684 ALX 3 PAM non-polymer 2 2 31 ? ? ? 
PRD_002506 O14 O14 O 0 1 N N N 13.397 -4.023 -15.029 1.886  -0.419 -2.054 ALX 3 OAO non-polymer 2 2 32 ? ? ? 
PRD_002506 O15 O15 O 0 1 N N N 15.420 -2.901 -13.863 2.307  -2.534 -0.742 ALX 3 OAP non-polymer 2 2 33 ? ? ? 
PRD_002506 O16 O16 O 0 1 N N N 13.786 0.782  -15.395 4.975  -2.042 1.019  ALX 3 O3  non-polymer 2 2 34 ? ? ? 
PRD_002506 C18 C18 C 0 1 N N S 15.720 1.424  -16.719 6.694  -0.402 0.565  ALX 3 C4  non-polymer 2 2 35 ? ? ? 
PRD_002506 O17 O17 O 0 1 N N N 14.999 2.549  -17.307 7.534  -0.906 1.605  ALX 3 O4  non-polymer 2 2 36 ? ? ? 
PRD_002506 O18 O18 O 0 1 N N N 18.499 2.356  -16.912 8.641  2.746  -0.074 ALX 3 O6  non-polymer 2 2 37 ? ? ? 
PRD_002506 O19 O19 O 0 1 N N N 17.417 -0.291 -17.146 6.053  1.614  -0.604 ALX 3 O5  non-polymer 2 2 38 ? ? ? 
PRD_002506 H1  H1  H 0 1 N N N 8.638  -0.653 -11.593 -4.530 -1.990 -1.141 GLC 1 H1  polymer     1 1 39 ? ? ? 
PRD_002506 H2  H2  H 0 1 N N N 9.604  -2.863 -11.780 -2.491 -3.368 -1.309 GLC 1 H2  polymer     1 1 40 ? ? ? 
PRD_002506 H3  H3  H 0 1 N N N 12.269 -1.428 -11.408 -1.629 -1.909 1.232  GLC 1 H3  polymer     1 1 41 ? ? ? 
PRD_002506 H4  H4  H 0 1 N N N 11.308 -3.055 -13.854 -0.487 -1.827 -1.600 GLC 1 H4  polymer     1 1 42 ? ? ? 
PRD_002506 H5  H5  H 0 1 N N N 11.764 -0.027 -13.469 -1.961 0.301  0.019  GLC 1 H5  polymer     1 1 43 ? ? ? 
PRD_002506 H6  H6  H 0 1 N N N 11.035 0.289  -15.633 -0.139 1.127  -1.500 GLC 1 H61 polymer     1 1 44 ? ? ? 
PRD_002506 H7  H7  H 0 1 N N N 11.888 -1.285 -15.776 -0.951 0.315  -2.859 GLC 1 H62 polymer     1 1 45 ? ? ? 
PRD_002506 H8  H8  H 0 1 N Y N 10.460 -2.894 -9.605  -4.214 -4.106 0.177  GLC 1 HO2 polymer     1 1 46 ? ? ? 
PRD_002506 H9  H9  H 0 1 N Y N 13.044 -3.612 -11.665 -0.889 -4.175 1.035  GLC 1 HO3 polymer     1 1 47 ? ? ? 
PRD_002506 H10 H10 H 0 1 N Y N 9.794  -1.306 -16.762 -1.628 2.597  -2.652 GLC 1 HO6 polymer     1 1 48 ? ? ? 
PRD_002506 H11 H11 H 0 1 N N N 8.660  2.174  -8.805  -6.516 -1.516 0.344  FRU 2 H11 polymer     1 1 49 ? ? ? 
PRD_002506 H12 H12 H 0 1 N N N 8.145  0.611  -9.526  -7.021 0.111  -0.171 FRU 2 H12 polymer     1 1 50 ? ? ? 
PRD_002506 H13 H13 H 0 1 N N N 10.572 3.301  -9.461  -6.387 0.342  2.085  FRU 2 H3  polymer     1 1 51 ? ? ? 
PRD_002506 H14 H14 H 0 1 N N N 11.637 2.748  -12.258 -4.069 2.280  2.178  FRU 2 H4  polymer     1 1 52 ? ? ? 
PRD_002506 H15 H15 H 0 1 N N N 8.913  3.955  -11.778 -6.118 2.382  -0.107 FRU 2 H5  polymer     1 1 53 ? ? ? 
PRD_002506 H16 H16 H 0 1 N N N 9.827  3.797  -14.098 -4.627 4.374  0.439  FRU 2 H61 polymer     1 1 54 ? ? ? 
PRD_002506 H17 H17 H 0 1 N N N 9.873  2.011  -13.915 -3.220 3.339  0.096  FRU 2 H62 polymer     1 1 55 ? ? ? 
PRD_002506 H18 H18 H 0 1 N Y N 9.134  0.362  -7.455  -6.653 -1.338 -2.034 FRU 2 HO1 polymer     1 1 56 ? ? ? 
PRD_002506 H19 H19 H 0 1 N Y N 12.829 2.782  -9.718  -4.694 0.228  3.768  FRU 2 HO3 polymer     1 1 57 ? ? ? 
PRD_002506 H20 H20 H 0 1 N Y N 11.275 5.052  -12.324 -5.940 3.749  2.396  FRU 2 HO4 polymer     1 1 58 ? ? ? 
PRD_002506 H21 H21 H 0 1 N Y N 7.925  2.761  -14.917 -3.923 4.555  -1.836 FRU 2 HO6 polymer     1 1 59 ? ? ? 
PRD_002506 H22 H22 H 0 1 N N N 17.058 -2.174 -16.333 4.065  1.896  -1.092 ALX 3 H1  non-polymer 2 2 60 ? ? ? 
PRD_002506 H23 H23 H 0 1 N Y N 15.270 -2.525 -17.827 4.565  3.083  0.919  ALX 3 HO1 non-polymer 2 2 61 ? ? ? 
PRD_002506 H24 H24 H 0 1 N N N 15.844 -0.719 -14.868 4.515  -0.529 -1.101 ALX 3 H2  non-polymer 2 2 62 ? ? ? 
PRD_002506 H25 H25 H 0 1 N N N 14.209 0.075  -17.305 5.009  -0.168 1.892  ALX 3 H3  non-polymer 2 2 63 ? ? ? 
PRD_002506 H26 H26 H 0 1 N N N 16.243 0.583  -18.631 6.745  1.607  1.343  ALX 3 H5  non-polymer 2 2 64 ? ? ? 
PRD_002506 H27 H27 H 0 1 N N N 17.384 2.736  -18.629 9.057  0.872  0.690  ALX 3 H61 non-polymer 2 2 65 ? ? ? 
PRD_002506 H28 H28 H 0 1 N N N 18.584 1.406  -18.763 8.550  0.909  -1.016 ALX 3 H62 non-polymer 2 2 66 ? ? ? 
PRD_002506 H29 H29 H 0 1 N N N 15.684 -3.811 -13.795 2.334  -2.966 0.123  ALX 3 H9  non-polymer 2 2 67 ? ? ? 
PRD_002506 H30 H30 H 0 1 N Y N 13.183 0.074  -15.203 5.506  -2.496 1.688  ALX 3 HO3 non-polymer 2 2 68 ? ? ? 
PRD_002506 H31 H31 H 0 1 N N N 16.235 1.748  -15.803 6.923  -0.914 -0.369 ALX 3 H4  non-polymer 2 2 69 ? ? ? 
PRD_002506 H32 H32 H 0 1 N Y N 14.356 2.873  -16.687 8.479  -0.786 1.441  ALX 3 HO4 non-polymer 2 2 70 ? ? ? 
PRD_002506 H33 H33 H 0 1 N Y N 19.171 2.986  -17.145 9.544  2.973  -0.337 ALX 3 HO6 non-polymer 2 2 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002506 C1  C2  SING N N 1  
PRD_002506 C1  O4  SING N N 2  
PRD_002506 C1  H1  SING N N 3  
PRD_002506 C2  C3  SING N N 4  
PRD_002506 C2  O1  SING N N 5  
PRD_002506 C2  H2  SING N N 6  
PRD_002506 C3  C4  SING N N 7  
PRD_002506 C3  O2  SING N N 8  
PRD_002506 C3  H3  SING N N 9  
PRD_002506 C4  C5  SING N N 10 
PRD_002506 C4  O3  SING N N 11 
PRD_002506 C4  H4  SING N N 12 
PRD_002506 C5  C6  SING N N 13 
PRD_002506 C5  O4  SING N N 14 
PRD_002506 C5  H5  SING N N 15 
PRD_002506 C6  O5  SING N N 16 
PRD_002506 C6  H6  SING N N 17 
PRD_002506 C6  H7  SING N N 18 
PRD_002506 O1  H8  SING N N 19 
PRD_002506 O2  H9  SING N N 20 
PRD_002506 O5  H10 SING N N 21 
PRD_002506 C7  C8  SING N N 22 
PRD_002506 C7  O6  SING N N 23 
PRD_002506 C7  H11 SING N N 24 
PRD_002506 C7  H12 SING N N 25 
PRD_002506 C8  C9  SING N N 26 
PRD_002506 C8  O7  SING N N 27 
PRD_002506 C8  O10 SING N N 28 
PRD_002506 C9  C10 SING N N 29 
PRD_002506 C9  O8  SING N N 30 
PRD_002506 C9  H13 SING N N 31 
PRD_002506 C10 C11 SING N N 32 
PRD_002506 C10 O9  SING N N 33 
PRD_002506 C10 H14 SING N N 34 
PRD_002506 C11 C12 SING N N 35 
PRD_002506 C11 O10 SING N N 36 
PRD_002506 C11 H15 SING N N 37 
PRD_002506 C12 O11 SING N N 38 
PRD_002506 C12 H16 SING N N 39 
PRD_002506 C12 H17 SING N N 40 
PRD_002506 O6  H18 SING N N 41 
PRD_002506 O8  H19 SING N N 42 
PRD_002506 O9  H20 SING N N 43 
PRD_002506 O11 H21 SING N N 44 
PRD_002506 C17 O18 SING N N 45 
PRD_002506 C17 C16 SING N N 46 
PRD_002506 C16 O19 SING N N 47 
PRD_002506 C16 C18 SING N N 48 
PRD_002506 O19 C13 SING N N 49 
PRD_002506 O12 C13 SING N N 50 
PRD_002506 O17 C18 SING N N 51 
PRD_002506 C13 C14 SING N N 52 
PRD_002506 C18 C15 SING N N 53 
PRD_002506 C15 C14 SING N N 54 
PRD_002506 C15 O16 SING N N 55 
PRD_002506 C14 O13 SING N N 56 
PRD_002506 O13 P1  SING N N 57 
PRD_002506 O14 P1  DOUB N N 58 
PRD_002506 P1  O15 SING N N 59 
PRD_002506 C13 H22 SING N N 60 
PRD_002506 O12 H23 SING N N 61 
PRD_002506 C14 H24 SING N N 62 
PRD_002506 C15 H25 SING N N 63 
PRD_002506 C16 H26 SING N N 64 
PRD_002506 C17 H27 SING N N 65 
PRD_002506 C17 H28 SING N N 66 
PRD_002506 O15 H29 SING N N 67 
PRD_002506 O16 H30 SING N N 68 
PRD_002506 C18 H31 SING N N 69 
PRD_002506 O17 H32 SING N N 70 
PRD_002506 O18 H33 SING N N 71 
PRD_002506 C1  O7  SING N N 72 
PRD_002506 O3  P1  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002506 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1O[C@@H](O)[C@H](O[P](O)(=O)O[C@@H]2[C@H](O)[C@@H](O)[C@H](O[C@@H]2CO)O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@H](O)[C@@H]1O"   
PRD_002506 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O)[CH](O[P](O)(=O)O[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH](O)[CH]1O"                         
PRD_002506 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OP(=O)(O)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)CO)O)O)O" 
PRD_002506 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)OP(=O)(O)OC2C(OC(C(C2O)O)OC3(C(C(C(O3)CO)O)O)CO)CO)O)O)O"                                                              
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002506 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[(2~{S},3~{S},4~{S},5~{R})-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl] [(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" 
# 
