data_PRDCC_001148
# 
_chem_comp.id                                    PRD_001148 
_chem_comp.name                                  BIVALIRUDIN 
_chem_comp.formula                               "C20 H31 N6 O4" 
_chem_comp.formula_weight                        419.498 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_001148 N1  N1  N 0 1 N N N 5.310  -42.937 2.069  3.569  -1.089 -1.844 DPN 1 N    polymer 1 1 1  ? ? ? 
PRD_001148 C1  C1  C 0 1 N N R 6.155  -41.858 1.507  3.445  -0.437 -0.534 DPN 1 CA   polymer 1 1 2  ? ? ? 
PRD_001148 C2  C2  C 0 1 N N N 5.808  -40.585 2.268  1.993  -0.383 -0.134 DPN 1 C    polymer 1 1 3  ? ? ? 
PRD_001148 O1  O1  O 0 1 N N N 5.684  -40.660 3.525  1.194  -1.133 -0.654 DPN 1 O    polymer 1 1 4  ? ? ? 
PRD_001148 C3  C3  C 0 1 N N N 7.626  -42.225 1.657  4.232  -1.234 0.509  DPN 1 CB   polymer 1 1 5  ? ? ? 
PRD_001148 C4  C4  C 0 1 Y N N 8.591  -41.217 1.065  5.701  -1.184 0.176  DPN 1 CG   polymer 1 1 6  ? ? ? 
PRD_001148 C5  C5  C 0 1 Y N N 8.604  -41.015 -0.354 6.492  -0.174 0.690  DPN 1 CD1  polymer 1 1 7  ? ? ? 
PRD_001148 C6  C6  C 0 1 Y N N 9.460  -40.513 1.888  6.258  -2.152 -0.639 DPN 1 CD2  polymer 1 1 8  ? ? ? 
PRD_001148 C7  C7  C 0 1 Y N N 9.501  -40.084 -0.839 7.839  -0.128 0.384  DPN 1 CE1  polymer 1 1 9  ? ? ? 
PRD_001148 C8  C8  C 0 1 Y N N 10.334 -39.569 1.375  7.605  -2.107 -0.944 DPN 1 CE2  polymer 1 1 10 ? ? ? 
PRD_001148 C9  C9  C 0 1 Y N N 10.334 -39.379 0.007  8.396  -1.093 -0.435 DPN 1 CZ   polymer 1 1 11 ? ? ? 
PRD_001148 N2  N2  N 0 1 N N N 5.612  -39.462 1.613  1.583  0.498  0.800  PRO 2 N    polymer 1 1 12 ? ? ? 
PRD_001148 C10 C10 C 0 1 N N S 5.264  -38.216 2.328  0.203  0.656  1.281  PRO 2 CA   polymer 1 1 13 ? ? ? 
PRD_001148 C11 C11 C 0 1 N N N 3.907  -38.361 2.997  -0.702 1.018  0.132  PRO 2 C    polymer 1 1 14 ? ? ? 
PRD_001148 O2  O2  O 0 1 N N N 2.974  -38.943 2.411  -0.246 1.134  -0.986 PRO 2 O    polymer 1 1 15 ? ? ? 
PRD_001148 C12 C12 C 0 1 N N N 5.174  -37.151 1.183  0.209  1.795  2.323  PRO 2 CB   polymer 1 1 16 ? ? ? 
PRD_001148 C13 C13 C 0 1 N N N 5.906  -37.777 0.045  1.487  2.594  1.957  PRO 2 CG   polymer 1 1 17 ? ? ? 
PRD_001148 C14 C14 C 0 1 N N N 5.605  -39.284 0.162  2.445  1.458  1.513  PRO 2 CD   polymer 1 1 18 ? ? ? 
PRD_001148 N3  N3  N 0 1 N N N 3.763  -37.859 4.206  -2.019 1.212  0.346  ARG 3 N    polymer 1 1 19 ? ? ? 
PRD_001148 C15 C15 C 0 1 N N S 2.482  -38.030 4.914  -2.899 1.563  -0.771 ARG 3 CA   polymer 1 1 20 ? ? ? 
PRD_001148 C16 C16 C 0 1 N N N 1.565  -36.884 4.689  -2.862 3.054  -0.990 ARG 3 C    polymer 1 1 21 ? ? ? 
PRD_001148 O3  O3  O 0 1 N N N 0.622  -36.603 5.461  -2.171 3.751  -0.285 ARG 3 O    polymer 1 1 22 ? ? ? 
PRD_001148 C17 C17 C 0 1 N N N 2.756  -38.399 6.413  -4.330 1.130  -0.449 ARG 3 CB   polymer 1 1 23 ? ? ? 
PRD_001148 C18 C18 C 0 1 N N N 3.063  -39.911 6.472  -4.391 -0.396 -0.349 ARG 3 CG   polymer 1 1 24 ? ? ? 
PRD_001148 C19 C19 C 0 1 N N N 3.610  -40.331 7.832  -5.823 -0.828 -0.027 ARG 3 CD   polymer 1 1 25 ? ? ? 
PRD_001148 N4  N4  N 0 1 N N N 3.634  -41.788 7.876  -5.882 -2.289 0.068  ARG 3 NE   polymer 1 1 26 ? ? ? 
PRD_001148 C20 C20 C 0 1 N N N 3.819  -42.465 9.003  -7.068 -2.909 0.350  ARG 3 CZ   polymer 1 1 27 ? ? ? 
PRD_001148 N5  N5  N 0 1 N N N 4.089  -41.863 10.154 -8.170 -2.185 0.539  ARG 3 NH1  polymer 1 1 28 ? ? ? 
PRD_001148 N6  N6  N 1 1 N N N 3.750  -43.816 8.984  -7.121 -4.237 0.437  ARG 3 NH2  polymer 1 1 29 ? ? ? 
PRD_001148 O4  O4  O 0 1 N Y N 1.848  -36.024 3.793  -3.596 3.607  -1.968 ARG 3 OXT  polymer 1 1 30 ? ? ? 
PRD_001148 H1  H1  H 0 1 N N N 5.506  -43.796 1.596  4.526  -1.079 -2.164 DPN 1 H    polymer 1 1 31 ? ? ? 
PRD_001148 H2  H2  H 0 1 N Y N 5.507  -43.041 3.044  3.206  -2.030 -1.816 DPN 1 H2   polymer 1 1 32 ? ? ? 
PRD_001148 H3  H3  H 0 1 N N N 5.922  -41.719 0.441  3.844  0.576  -0.592 DPN 1 HA   polymer 1 1 33 ? ? ? 
PRD_001148 H4  H4  H 0 1 N N N 7.848  -42.323 2.730  4.068  -0.802 1.496  DPN 1 HB2  polymer 1 1 34 ? ? ? 
PRD_001148 H5  H5  H 0 1 N N N 7.791  -43.192 1.159  3.893  -2.270 0.505  DPN 1 HB3  polymer 1 1 35 ? ? ? 
PRD_001148 H6  H6  H 0 1 N N N 7.945  -41.564 -1.011 6.058  0.580  1.330  DPN 1 HD1  polymer 1 1 36 ? ? ? 
PRD_001148 H7  H7  H 0 1 N N N 9.454  -40.706 2.951  5.641  -2.944 -1.036 DPN 1 HD2  polymer 1 1 37 ? ? ? 
PRD_001148 H8  H8  H 0 1 N N N 9.552  -39.903 -1.903 8.458  0.661  0.785  DPN 1 HE1  polymer 1 1 38 ? ? ? 
PRD_001148 H9  H9  H 0 1 N N N 10.990 -39.003 2.020  8.041  -2.863 -1.581 DPN 1 HE2  polymer 1 1 39 ? ? ? 
PRD_001148 H10 H10 H 0 1 N N N 11.011 -38.652 -0.417 9.448  -1.058 -0.674 DPN 1 HZ   polymer 1 1 40 ? ? ? 
PRD_001148 H11 H11 H 0 1 N N N 6.038  -37.934 3.057  -0.137 -0.271 1.743  PRO 2 HA   polymer 1 1 41 ? ? ? 
PRD_001148 H12 H12 H 0 1 N N N 4.126  -36.956 0.913  -0.679 2.418  2.218  PRO 2 HB2  polymer 1 1 42 ? ? ? 
PRD_001148 H13 H13 H 0 1 N N N 5.656  -36.210 1.487  0.282  1.392  3.333  PRO 2 HB3  polymer 1 1 43 ? ? ? 
PRD_001148 H14 H14 H 0 1 N N N 5.540  -37.382 -0.914 1.293  3.288  1.139  PRO 2 HG2  polymer 1 1 44 ? ? ? 
PRD_001148 H15 H15 H 0 1 N N N 6.987  -37.590 0.130  1.883  3.118  2.827  PRO 2 HG3  polymer 1 1 45 ? ? ? 
PRD_001148 H16 H16 H 0 1 N N N 6.385  -39.890 -0.322 2.904  0.984  2.381  PRO 2 HD2  polymer 1 1 46 ? ? ? 
PRD_001148 H17 H17 H 0 1 N N N 4.625  -39.534 -0.270 3.212  1.849  0.843  PRO 2 HD3  polymer 1 1 47 ? ? ? 
PRD_001148 H18 H18 H 0 1 N N N 4.517  -37.366 4.640  -2.383 1.118  1.240  ARG 3 H    polymer 1 1 48 ? ? ? 
PRD_001148 H19 H19 H 0 1 N N N 1.994  -38.913 4.475  -2.560 1.055  -1.674 ARG 3 HA   polymer 1 1 49 ? ? ? 
PRD_001148 H20 H20 H 0 1 N N N 3.617  -37.826 6.789  -4.637 1.569  0.501  ARG 3 HB2  polymer 1 1 50 ? ? ? 
PRD_001148 H21 H21 H 0 1 N N N 1.870  -38.172 7.023  -4.999 1.470  -1.239 ARG 3 HB3  polymer 1 1 51 ? ? ? 
PRD_001148 H22 H22 H 0 1 N N N 2.136  -40.469 6.274  -4.085 -0.834 -1.299 ARG 3 HG2  polymer 1 1 52 ? ? ? 
PRD_001148 H23 H23 H 0 1 N N N 3.808  -40.152 5.700  -3.722 -0.735 0.441  ARG 3 HG3  polymer 1 1 53 ? ? ? 
PRD_001148 H24 H24 H 0 1 N N N 4.628  -39.937 7.963  -6.130 -0.390 0.923  ARG 3 HD2  polymer 1 1 54 ? ? ? 
PRD_001148 H25 H25 H 0 1 N N N 2.961  -39.944 8.631  -6.492 -0.489 -0.817 ARG 3 HD3  polymer 1 1 55 ? ? ? 
PRD_001148 H26 H26 H 0 1 N N N 3.506  -42.297 7.025  -5.079 -2.817 -0.069 ARG 3 HE   polymer 1 1 56 ? ? ? 
PRD_001148 H27 H27 H 0 0 N N N 4.236  -42.407 10.980 -8.131 -1.218 0.476  ARG 3 HH11 polymer 1 1 57 ? ? ? 
PRD_001148 H28 H28 H 0 0 N N N 4.146  -40.865 10.195 -9.011 -2.624 0.739  ARG 3 HH12 polymer 1 1 58 ? ? ? 
PRD_001148 H29 H29 H 0 0 N N N 3.901  -44.336 9.825  -6.319 -4.765 0.299  ARG 3 HH21 polymer 1 1 59 ? ? ? 
PRD_001148 H30 H30 H 0 0 N N N 3.548  -44.294 8.129  -7.963 -4.677 0.637  ARG 3 HH22 polymer 1 1 60 ? ? ? 
PRD_001148 H31 H31 H 0 1 N Y N 1.263  -35.280 3.871  -3.540 4.567  -2.070 ARG 3 HXT  polymer 1 1 61 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_001148 N1  C1  SING N N 1  
PRD_001148 N1  H1  SING N N 2  
PRD_001148 N1  H2  SING N N 3  
PRD_001148 C1  C2  SING N N 4  
PRD_001148 C1  C3  SING N N 5  
PRD_001148 C1  H3  SING N N 6  
PRD_001148 C2  O1  DOUB N N 7  
PRD_001148 C3  C4  SING N N 8  
PRD_001148 C3  H4  SING N N 9  
PRD_001148 C3  H5  SING N N 10 
PRD_001148 C4  C5  DOUB Y N 11 
PRD_001148 C4  C6  SING Y N 12 
PRD_001148 C5  C7  SING Y N 13 
PRD_001148 C5  H6  SING N N 14 
PRD_001148 C6  C8  DOUB Y N 15 
PRD_001148 C6  H7  SING N N 16 
PRD_001148 C7  C9  DOUB Y N 17 
PRD_001148 C7  H8  SING N N 18 
PRD_001148 C8  C9  SING Y N 19 
PRD_001148 C8  H9  SING N N 20 
PRD_001148 C9  H10 SING N N 21 
PRD_001148 N2  C10 SING N N 22 
PRD_001148 N2  C14 SING N N 23 
PRD_001148 C10 C11 SING N N 24 
PRD_001148 C10 C12 SING N N 25 
PRD_001148 C10 H11 SING N N 26 
PRD_001148 C11 O2  DOUB N N 27 
PRD_001148 C12 C13 SING N N 28 
PRD_001148 C12 H12 SING N N 29 
PRD_001148 C12 H13 SING N N 30 
PRD_001148 C13 C14 SING N N 31 
PRD_001148 C13 H14 SING N N 32 
PRD_001148 C13 H15 SING N N 33 
PRD_001148 C14 H16 SING N N 34 
PRD_001148 C14 H17 SING N N 35 
PRD_001148 N3  C15 SING N N 36 
PRD_001148 N3  H18 SING N N 37 
PRD_001148 C15 C16 SING N N 38 
PRD_001148 C15 C17 SING N N 39 
PRD_001148 C15 H19 SING N N 40 
PRD_001148 C16 O3  DOUB N N 41 
PRD_001148 C16 O4  SING N N 42 
PRD_001148 C17 C18 SING N N 43 
PRD_001148 C17 H20 SING N N 44 
PRD_001148 C17 H21 SING N N 45 
PRD_001148 C18 C19 SING N N 46 
PRD_001148 C18 H22 SING N N 47 
PRD_001148 C18 H23 SING N N 48 
PRD_001148 C19 N4  SING N N 49 
PRD_001148 C19 H24 SING N N 50 
PRD_001148 C19 H25 SING N N 51 
PRD_001148 N4  C20 SING N N 52 
PRD_001148 N4  H26 SING N N 53 
PRD_001148 C20 N5  SING N N 54 
PRD_001148 C20 N6  DOUB N N 55 
PRD_001148 N5  H27 SING N N 56 
PRD_001148 N5  H28 SING N N 57 
PRD_001148 N6  H29 SING N N 58 
PRD_001148 N6  H30 SING N N 59 
PRD_001148 O4  H31 SING N N 60 
PRD_001148 C2  N2  SING N N 61 
PRD_001148 C11 N3  SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_001148 SMILES           ACDLabs              12.01 "O=C(NC(C(=O)O)CCCNC(=[NH2+])\N)C2N(C(=O)C(N)Cc1ccccc1)CCC2"                                                                                                                                       
PRD_001148 InChI            InChI                1.03  "InChI=1S/C20H30N6O4/c21-14(12-13-6-2-1-3-7-13)18(28)26-11-5-9-16(26)17(27)25-15(19(29)30)8-4-10-24-20(22)23/h1-3,6-7,14-16H,4-5,8-12,21H2,(H,25,27)(H,29,30)(H4,22,23,24)/p+1/t14-,15+,16+/m1/s1" 
PRD_001148 InChIKey         InChI                1.03  NTUPOKHATNSWCY-PMPSAXMXSA-O                                                                                                                                                                        
PRD_001148 SMILES_CANONICAL CACTVS               3.385 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=[NH2+])C(O)=O"                                                                                                                             
PRD_001148 SMILES           CACTVS               3.385 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=[NH2+])C(O)=O"                                                                                                                                 
PRD_001148 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)O)N"                                                                                                                           
PRD_001148 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCCNC(=[NH2+])N)C(=O)O)N"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_001148 "SYSTEMATIC NAME" ACDLabs              12.01 "D-phenylalanyl-L-prolyl-N~5~-[amino(iminio)methyl]-L-ornithine"                                                                                         
PRD_001148 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S)-4-[[(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentyl]amino]methylidene]azanium" 
# 
