data_PRDCC_002508
# 
_chem_comp.id                                    PRD_002508 
_chem_comp.name                                  "Agrocinopine C-like (D-glucos-2-yl sucros-3-yl phosphate; beta-D-glucose form)" 
_chem_comp.formula                               "C18 H33 O19 P" 
_chem_comp.formula_weight                        584.417 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002508 C1  C1  C 0 1 N N S 26.118 4.281  145.051 2.799   -0.549 1.576  GLC 1 C1  polymer     1 1 1  ? ? ? 
PRD_002508 C2  C2  C 0 1 N N R 25.207 5.362  144.476 1.291   -0.589 1.839  GLC 1 C2  polymer     1 1 2  ? ? ? 
PRD_002508 C3  C3  C 0 1 N N S 23.748 5.069  144.822 0.581   0.319  0.831  GLC 1 C3  polymer     1 1 3  ? ? ? 
PRD_002508 C4  C4  C 0 1 N N S 23.393 3.666  144.342 1.153   1.735  0.943  GLC 1 C4  polymer     1 1 4  ? ? ? 
PRD_002508 C5  C5  C 0 1 N N R 24.320 2.676  145.036 2.666   1.685  0.715  GLC 1 C5  polymer     1 1 5  ? ? ? 
PRD_002508 C6  C6  C 0 1 N N N 24.061 1.240  144.646 3.255   3.087  0.886  GLC 1 C6  polymer     1 1 6  ? ? ? 
PRD_002508 O1  O1  O 0 1 N N N 25.665 6.617  144.993 0.816   -1.929 1.693  GLC 1 O2  polymer     1 1 7  ? ? ? 
PRD_002508 O2  O2  O 0 1 N N N 22.935 6.004  144.020 -0.820  0.346  1.115  GLC 1 O3  polymer     1 1 8  ? ? ? 
PRD_002508 O3  O3  O 0 1 N N N 22.036 3.319  144.593 0.549   2.575  -0.043 GLC 1 O4  polymer     1 1 9  ? ? ? 
PRD_002508 O4  O4  O 0 1 N N N 25.678 2.978  144.657 3.261   0.800  1.666  GLC 1 O5  polymer     1 1 10 ? ? ? 
PRD_002508 O5  O5  O 0 1 N N N 24.081 1.099  143.233 4.646   3.063  0.559  GLC 1 O6  polymer     1 1 11 ? ? ? 
PRD_002508 C7  C7  C 0 1 N N N 26.622 5.005  148.806 5.057   -2.179 1.081  FRU 2 C1  polymer     1 1 12 ? ? ? 
PRD_002508 C8  C8  C 0 1 N N R 26.895 4.041  147.664 4.455   -1.274 0.003  FRU 2 C2  polymer     1 1 13 ? ? ? 
PRD_002508 C9  C9  C 0 1 N N S 27.020 2.556  148.059 4.629   -1.924 -1.383 FRU 2 C3  polymer     1 1 14 ? ? ? 
PRD_002508 C10 C10 C 0 1 N N S 28.020 2.084  147.001 5.529   -0.932 -2.158 FRU 2 C4  polymer     1 1 15 ? ? ? 
PRD_002508 C11 C11 C 0 1 N N R 29.015 3.233  147.076 6.201   -0.138 -1.008 FRU 2 C5  polymer     1 1 16 ? ? ? 
PRD_002508 C12 C12 C 0 1 N N N 29.958 3.355  145.903 6.645   1.243  -1.495 FRU 2 C6  polymer     1 1 17 ? ? ? 
PRD_002508 O6  O6  O 0 1 N N N 27.737 5.072  149.683 5.055   -1.493 2.334  FRU 2 O1  polymer     1 1 18 ? ? ? 
PRD_002508 O7  O7  O 0 1 N Y N 26.163 4.419  146.457 3.068   -1.059 0.269  FRU 2 O2  polymer     1 1 19 ? ? ? 
PRD_002508 O8  O8  O 0 1 N N N 25.754 1.900  147.991 3.364   -2.063 -2.033 FRU 2 O3  polymer     1 1 20 ? ? ? 
PRD_002508 O9  O9  O 0 1 N N N 28.617 0.818  147.272 6.506   -1.628 -2.935 FRU 2 O4  polymer     1 1 21 ? ? ? 
PRD_002508 O10 O10 O 0 1 N N N 28.169 4.394  147.122 5.152   -0.017 -0.024 FRU 2 O5  polymer     1 1 22 ? ? ? 
PRD_002508 O11 O11 O 0 1 N N N 30.544 4.652  145.862 7.362   1.908  -0.453 FRU 2 O6  polymer     1 1 23 ? ? ? 
PRD_002508 P1  P1  P 0 1 N N N 21.993 7.128  144.452 -1.938  -0.132 0.060  BNX 3 PAM non-polymer 2 2 24 ? ? ? 
PRD_002508 O12 O12 O 0 1 N N N 20.855 7.236  143.483 -1.770  0.612  -1.209 BNX 3 OAO non-polymer 2 2 25 ? ? ? 
PRD_002508 O13 O13 O 0 1 N N N 21.640 7.033  145.920 -1.773  -1.710 -0.219 BNX 3 OAP non-polymer 2 2 26 ? ? ? 
PRD_002508 O14 O14 O 0 1 N N N 22.870 8.492  144.427 -3.402  0.157  0.662  BNX 3 O2  non-polymer 2 2 27 ? ? ? 
PRD_002508 C13 C13 C 0 1 N N R 23.040 9.302  143.248 -4.605  -0.061 -0.079 BNX 3 C2  non-polymer 2 2 28 ? ? ? 
PRD_002508 C14 C14 C 0 1 N N S 24.529 9.508  143.034 -5.372  1.259  -0.208 BNX 3 C3  non-polymer 2 2 29 ? ? ? 
PRD_002508 O15 O15 O 0 1 N N N 25.101 8.249  142.705 -4.592  2.194  -0.955 BNX 3 O3  non-polymer 2 2 30 ? ? ? 
PRD_002508 C15 C15 C 0 1 N N S 24.776 10.522 141.928 -6.695  0.998  -0.935 BNX 3 C4  non-polymer 2 2 31 ? ? ? 
PRD_002508 O16 O16 O 0 1 N N N 26.177 10.737 141.799 -7.452  2.209  -0.998 BNX 3 O4  non-polymer 2 2 32 ? ? ? 
PRD_002508 C16 C16 C 0 1 N N R 24.047 11.818 142.281 -7.490  -0.063 -0.168 BNX 3 C5  non-polymer 2 2 33 ? ? ? 
PRD_002508 C17 C17 C 0 1 N N N 24.180 12.888 141.239 -8.786  -0.372 -0.920 BNX 3 C6  non-polymer 2 2 34 ? ? ? 
PRD_002508 O17 O17 O 0 1 N N N 23.780 12.397 139.954 -9.580  -1.276 -0.148 BNX 3 O6  non-polymer 2 2 35 ? ? ? 
PRD_002508 O18 O18 O 0 1 N N N 22.642 11.547 142.450 -6.707  -1.253 -0.057 BNX 3 O5  non-polymer 2 2 36 ? ? ? 
PRD_002508 C18 C18 C 0 1 N N R 22.329 10.628 143.499 -5.479  -1.082 0.654  BNX 3 C1  non-polymer 2 2 37 ? ? ? 
PRD_002508 O19 O19 O 0 1 N Y N 20.993 10.770 143.749 -4.793  -2.333 0.728  BNX 3 O1  non-polymer 2 2 38 ? ? ? 
PRD_002508 H1  H1  H 0 1 N N N 27.126 4.449  144.645 3.313   -1.160 2.318  GLC 1 H1  polymer     1 1 39 ? ? ? 
PRD_002508 H2  H2  H 0 1 N N N 25.310 5.355  143.381 1.088   -0.238 2.851  GLC 1 H2  polymer     1 1 40 ? ? ? 
PRD_002508 H3  H3  H 0 1 N N N 23.563 5.181  145.901 0.742   -0.060 -0.178 GLC 1 H3  polymer     1 1 41 ? ? ? 
PRD_002508 H4  H4  H 0 1 N N N 23.589 3.616  143.261 0.948   2.133  1.937  GLC 1 H4  polymer     1 1 42 ? ? ? 
PRD_002508 H5  H5  H 0 1 N N N 24.201 2.780  146.125 2.870   1.326  -0.293 GLC 1 H5  polymer     1 1 43 ? ? ? 
PRD_002508 H6  H6  H 0 1 N N N 24.840 0.599  145.085 2.738   3.781  0.223  GLC 1 H61 polymer     1 1 44 ? ? ? 
PRD_002508 H7  H7  H 0 1 N N N 23.076 0.933  145.027 3.130   3.411  1.919  GLC 1 H62 polymer     1 1 45 ? ? ? 
PRD_002508 H8  H8  H 0 1 N Y N 25.119 7.317  144.655 1.227   -2.560 2.298  GLC 1 HO2 polymer     1 1 46 ? ? ? 
PRD_002508 H9  H9  H 0 1 N Y N 21.870 2.439  144.276 0.866   3.489  -0.029 GLC 1 HO4 polymer     1 1 47 ? ? ? 
PRD_002508 H10 H10 H 0 1 N Y N 23.917 0.192  143.002 5.085   3.920  0.645  GLC 1 HO6 polymer     1 1 48 ? ? ? 
PRD_002508 H11 H11 H 0 1 N N N 26.425 6.006  148.395 4.463   -3.089 1.164  FRU 2 H11 polymer     1 1 49 ? ? ? 
PRD_002508 H12 H12 H 0 1 N N N 25.741 4.660  149.367 6.081   -2.436 0.809  FRU 2 H12 polymer     1 1 50 ? ? ? 
PRD_002508 H13 H13 H 0 1 N N N 27.465 2.472  149.062 5.120   -2.893 -1.292 FRU 2 H3  polymer     1 1 51 ? ? ? 
PRD_002508 H14 H14 H 0 1 N N N 27.534 2.084  146.014 4.931   -0.273 -2.787 FRU 2 H4  polymer     1 1 52 ? ? ? 
PRD_002508 H15 H15 H 0 1 N N N 29.598 3.147  148.005 7.048   -0.691 -0.604 FRU 2 H5  polymer     1 1 53 ? ? ? 
PRD_002508 H16 H16 H 0 1 N N N 30.754 2.602  146.000 7.290   1.132  -2.366 FRU 2 H61 polymer     1 1 54 ? ? ? 
PRD_002508 H17 H17 H 0 1 N N N 29.400 3.181  144.971 5.768   1.832  -1.765 FRU 2 H62 polymer     1 1 55 ? ? ? 
PRD_002508 H18 H18 H 0 1 N Y N 27.549 5.678  150.390 5.423   -2.008 3.065  FRU 2 HO1 polymer     1 1 56 ? ? ? 
PRD_002508 H19 H19 H 0 1 N Y N 25.856 0.988  148.238 3.414   -2.467 -2.910 FRU 2 HO3 polymer     1 1 57 ? ? ? 
PRD_002508 H20 H20 H 0 1 N Y N 29.222 0.597  146.574 7.094   -1.049 -3.438 FRU 2 HO4 polymer     1 1 58 ? ? ? 
PRD_002508 H21 H21 H 0 1 N Y N 31.133 4.710  145.119 7.675   2.791  -0.692 FRU 2 HO6 polymer     1 1 59 ? ? ? 
PRD_002508 H22 H22 H 0 1 N N N 20.696 7.057  146.021 -1.871  -2.260 0.570  BNX 3 H2A non-polymer 2 2 60 ? ? ? 
PRD_002508 H23 H23 H 0 1 N N N 22.603 8.809  142.367 -4.359  -0.438 -1.071 BNX 3 H2  non-polymer 2 2 61 ? ? ? 
PRD_002508 H24 H24 H 0 1 N N N 24.970 9.890  143.967 -5.573  1.662  0.785  BNX 3 H3  non-polymer 2 2 62 ? ? ? 
PRD_002508 H25 H25 H 0 1 N Y N 24.935 7.632  143.408 -5.018  3.054  -1.076 BNX 3 HO3 non-polymer 2 2 63 ? ? ? 
PRD_002508 H26 H26 H 0 1 N N N 24.364 10.129 140.987 -6.492  0.642  -1.945 BNX 3 H4  non-polymer 2 2 64 ? ? ? 
PRD_002508 H27 H27 H 0 1 N Y N 26.605 9.918  141.580 -8.304  2.118  -1.446 BNX 3 HO4 non-polymer 2 2 65 ? ? ? 
PRD_002508 H28 H28 H 0 1 N N N 24.461 12.198 143.227 -7.727  0.310  0.828  BNX 3 H5  non-polymer 2 2 66 ? ? ? 
PRD_002508 H29 H29 H 0 1 N N N 25.229 13.215 141.190 -9.341  0.552  -1.082 BNX 3 H61 non-polymer 2 2 67 ? ? ? 
PRD_002508 H30 H30 H 0 1 N N N 23.542 13.741 141.514 -8.549  -0.828 -1.881 BNX 3 H62 non-polymer 2 2 68 ? ? ? 
PRD_002508 H31 H31 H 0 1 N Y N 23.871 13.088 139.308 -10.419 -1.516 -0.564 BNX 3 HO6 non-polymer 2 2 69 ? ? ? 
PRD_002508 H32 H32 H 0 1 N N N 22.837 11.033 144.386 -5.690  -0.723 1.661  BNX 3 H1  non-polymer 2 2 70 ? ? ? 
PRD_002508 H33 H33 H 0 1 N Y N 20.735 10.176 144.444 -5.290  -3.029 1.181  BNX 3 HO1 non-polymer 2 2 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002508 C1  C2  SING N N 1  
PRD_002508 C1  O4  SING N N 2  
PRD_002508 C1  H1  SING N N 3  
PRD_002508 C2  C3  SING N N 4  
PRD_002508 C2  O1  SING N N 5  
PRD_002508 C2  H2  SING N N 6  
PRD_002508 C3  C4  SING N N 7  
PRD_002508 C3  O2  SING N N 8  
PRD_002508 C3  H3  SING N N 9  
PRD_002508 C4  C5  SING N N 10 
PRD_002508 C4  O3  SING N N 11 
PRD_002508 C4  H4  SING N N 12 
PRD_002508 C5  C6  SING N N 13 
PRD_002508 C5  O4  SING N N 14 
PRD_002508 C5  H5  SING N N 15 
PRD_002508 C6  O5  SING N N 16 
PRD_002508 C6  H6  SING N N 17 
PRD_002508 C6  H7  SING N N 18 
PRD_002508 O1  H8  SING N N 19 
PRD_002508 O3  H9  SING N N 20 
PRD_002508 O5  H10 SING N N 21 
PRD_002508 C7  C8  SING N N 22 
PRD_002508 C7  O6  SING N N 23 
PRD_002508 C7  H11 SING N N 24 
PRD_002508 C7  H12 SING N N 25 
PRD_002508 C8  C9  SING N N 26 
PRD_002508 C8  O7  SING N N 27 
PRD_002508 C8  O10 SING N N 28 
PRD_002508 C9  C10 SING N N 29 
PRD_002508 C9  O8  SING N N 30 
PRD_002508 C9  H13 SING N N 31 
PRD_002508 C10 C11 SING N N 32 
PRD_002508 C10 O9  SING N N 33 
PRD_002508 C10 H14 SING N N 34 
PRD_002508 C11 C12 SING N N 35 
PRD_002508 C11 O10 SING N N 36 
PRD_002508 C11 H15 SING N N 37 
PRD_002508 C12 O11 SING N N 38 
PRD_002508 C12 H16 SING N N 39 
PRD_002508 C12 H17 SING N N 40 
PRD_002508 O6  H18 SING N N 41 
PRD_002508 O8  H19 SING N N 42 
PRD_002508 O9  H20 SING N N 43 
PRD_002508 O11 H21 SING N N 44 
PRD_002508 C17 O17 SING N N 45 
PRD_002508 C17 C16 SING N N 46 
PRD_002508 C16 O18 SING N N 47 
PRD_002508 C16 C15 SING N N 48 
PRD_002508 O18 C18 SING N N 49 
PRD_002508 C18 O19 SING N N 50 
PRD_002508 C18 C13 SING N N 51 
PRD_002508 O16 C15 SING N N 52 
PRD_002508 C15 C14 SING N N 53 
PRD_002508 C14 C13 SING N N 54 
PRD_002508 C14 O15 SING N N 55 
PRD_002508 C13 O14 SING N N 56 
PRD_002508 O14 P1  SING N N 57 
PRD_002508 P1  O12 DOUB N N 58 
PRD_002508 P1  O13 SING N N 59 
PRD_002508 O13 H22 SING N N 60 
PRD_002508 C13 H23 SING N N 61 
PRD_002508 C14 H24 SING N N 62 
PRD_002508 O15 H25 SING N N 63 
PRD_002508 C15 H26 SING N N 64 
PRD_002508 O16 H27 SING N N 65 
PRD_002508 C16 H28 SING N N 66 
PRD_002508 C17 H29 SING N N 67 
PRD_002508 C17 H30 SING N N 68 
PRD_002508 O17 H31 SING N N 69 
PRD_002508 C18 H32 SING N N 70 
PRD_002508 O19 H33 SING N N 71 
PRD_002508 C1  O7  SING N N 72 
PRD_002508 O2  P1  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002508 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O)[C@H](O[P](O)(=O)O[C@@H]2[C@H](O)[C@@H](CO)O[C@H](O[C@]3(CO)O[C@H](CO)[C@@H](O)[C@@H]3O)[C@@H]2O)[C@@H](O)[C@@H]1O"    
PRD_002508 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O)[CH](O[P](O)(=O)O[CH]2[CH](O)[CH](CO)O[CH](O[C]3(CO)O[CH](CO)[CH](O)[CH]3O)[CH]2O)[CH](O)[CH]1O"                          
PRD_002508 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)O[C@H]2[C@@H]([C@H](O[C@@H]([C@@H]2O)O[C@]3([C@H]([C@@H]([C@H](O3)CO)O)O)CO)CO)O)O)O)O" 
PRD_002508 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)OP(=O)(O)OC2C(C(OC(C2O)OC3(C(C(C(O3)CO)O)O)CO)CO)O)O)O)O"                                                               
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002508 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-[(2~{S},3~{S},4~{S},5~{R})-2,5-bis(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] [(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" 
# 
