data_PRDCC_002548
# 
_chem_comp.id                                    PRD_002548 
_chem_comp.name                                  "Agrocinopine C-like (D-glucos-2-yl sucros-1-yl phosphate; beta-D-glucose form)" 
_chem_comp.formula                               "C18 H33 O19 P" 
_chem_comp.formula_weight                        584.417 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_002548 C1  C1  C 0 1 N N R 3.749  38.970 -7.408  1.865  -1.310 0.435  GLC 1 C1  polymer     1 1 1  ? ? ? 
PRD_002548 C2  C2  C 0 1 N N R 3.244  38.829 -8.832  2.135  -2.793 0.698  GLC 1 C2  polymer     1 1 2  ? ? ? 
PRD_002548 C3  C3  C 0 1 N N S 3.760  39.962 -9.689  3.418  -3.207 -0.030 GLC 1 C3  polymer     1 1 3  ? ? ? 
PRD_002548 C4  C4  C 0 1 N N S 3.348  41.295 -9.080  3.266  -2.900 -1.522 GLC 1 C4  polymer     1 1 4  ? ? ? 
PRD_002548 C5  C5  C 0 1 N N R 3.767  41.373 -7.613  2.952  -1.412 -1.700 GLC 1 C5  polymer     1 1 5  ? ? ? 
PRD_002548 C6  C6  C 0 1 N N N 3.213  42.585 -6.921  2.740  -1.108 -3.184 GLC 1 C6  polymer     1 1 6  ? ? ? 
PRD_002548 O1  O1  O 0 1 N Y N 5.124  38.940 -7.369  2.936  -0.528 0.967  GLC 1 O1  polymer     1 1 7  ? ? ? 
PRD_002548 O2  O2  O 0 1 N N N 3.683  37.577 -9.366  2.292  -3.009 2.102  GLC 1 O2  polymer     1 1 8  ? ? ? 
PRD_002548 O3  O3  O 0 1 N N N 3.160  39.822 -10.983 3.638  -4.608 0.150  GLC 1 O3  polymer     1 1 9  ? ? ? 
PRD_002548 O4  O4  O 0 1 N N N 3.989  42.358 -9.789  4.484  -3.215 -2.201 GLC 1 O4  polymer     1 1 10 ? ? ? 
PRD_002548 O5  O5  O 0 1 N N N 3.272  40.232 -6.886  1.765  -1.087 -0.973 GLC 1 O5  polymer     1 1 11 ? ? ? 
PRD_002548 O6  O6  O 0 1 N N N 1.791  42.659 -7.104  2.563  0.298  -3.362 GLC 1 O6  polymer     1 1 12 ? ? ? 
PRD_002548 C7  C7  C 0 1 N N N 6.010  36.844 -6.691  1.379  1.174  1.707  FRU 2 C1  polymer     1 1 13 ? ? ? 
PRD_002548 C8  C8  C 0 1 N N S 5.832  38.316 -6.311  2.686  0.878  0.967  FRU 2 C2  polymer     1 1 14 ? ? ? 
PRD_002548 C9  C9  C 0 1 N N S 7.092  39.126 -5.962  3.853  1.619  1.649  FRU 2 C3  polymer     1 1 15 ? ? ? 
PRD_002548 C10 C10 C 0 1 N N S 6.542  40.222 -5.029  4.372  2.591  0.562  FRU 2 C4  polymer     1 1 16 ? ? ? 
PRD_002548 C11 C11 C 0 1 N N R 5.584  39.384 -4.184  3.153  2.697  -0.388 FRU 2 C5  polymer     1 1 17 ? ? ? 
PRD_002548 C12 C12 C 0 1 N N N 4.408  40.150 -3.626  3.601  3.091  -1.797 FRU 2 C6  polymer     1 1 18 ? ? ? 
PRD_002548 O7  O7  O 0 1 N N N 6.785  36.202 -5.657  0.279  0.655  0.957  FRU 2 O1  polymer     1 1 19 ? ? ? 
PRD_002548 O8  O8  O 0 1 N N N 7.729  39.688 -7.108  4.877  0.697  2.027  FRU 2 O3  polymer     1 1 20 ? ? ? 
PRD_002548 O9  O9  O 0 1 N N N 7.554  40.819 -4.211  4.691  3.864  1.127  FRU 2 O4  polymer     1 1 21 ? ? ? 
PRD_002548 O10 O10 O 0 1 N N N 5.100  38.359 -5.095  2.602  1.360  -0.384 FRU 2 O5  polymer     1 1 22 ? ? ? 
PRD_002548 O11 O11 O 0 1 N N N 3.564  39.424 -2.749  2.452  3.296  -2.622 FRU 2 O6  polymer     1 1 23 ? ? ? 
PRD_002548 P1  P1  P 0 1 N N N 6.596  34.723 -5.291  -1.251 0.786  1.439  BNX 3 PAM non-polymer 2 2 24 ? ? ? 
PRD_002548 O12 O12 O 0 1 N N N 5.183  34.290 -5.535  -1.570 2.210  1.688  BNX 3 OAO non-polymer 2 2 25 ? ? ? 
PRD_002548 O13 O13 O 0 1 N N N 7.135  34.550 -3.915  -1.460 -0.056 2.796  BNX 3 OAP non-polymer 2 2 26 ? ? ? 
PRD_002548 O14 O14 O 0 1 N N N 7.476  33.842 -6.328  -2.226 0.209  0.295  BNX 3 O2  non-polymer 2 2 27 ? ? ? 
PRD_002548 C13 C13 C 0 1 N N R 8.884  33.606 -6.136  -3.651 0.280  0.378  BNX 3 C2  non-polymer 2 2 28 ? ? ? 
PRD_002548 C14 C14 C 0 1 N N S 9.585  34.137 -7.373  -4.236 -1.135 0.343  BNX 3 C3  non-polymer 2 2 29 ? ? ? 
PRD_002548 O15 O15 O 0 1 N N N 9.507  35.567 -7.363  -3.793 -1.865 1.488  BNX 3 O3  non-polymer 2 2 30 ? ? ? 
PRD_002548 C15 C15 C 0 1 N N S 11.039 33.692 -7.362  -5.765 -1.043 0.354  BNX 3 C4  non-polymer 2 2 31 ? ? ? 
PRD_002548 O16 O16 O 0 1 N N N 11.655 34.153 -8.573  -6.323 -2.355 0.249  BNX 3 O4  non-polymer 2 2 32 ? ? ? 
PRD_002548 C16 C16 C 0 1 N N R 11.062 32.169 -7.327  -6.227 -0.193 -0.833 BNX 3 C5  non-polymer 2 2 33 ? ? ? 
PRD_002548 C17 C17 C 0 1 N N N 12.447 31.556 -7.301  -7.749 -0.047 -0.795 BNX 3 C6  non-polymer 2 2 34 ? ? ? 
PRD_002548 O17 O17 O 0 1 N N N 13.269 32.152 -6.326  -8.190 0.647  -1.964 BNX 3 O6  non-polymer 2 2 35 ? ? ? 
PRD_002548 O18 O18 O 0 1 N N N 10.440 31.767 -6.098  -5.622 1.099  -0.756 BNX 3 O5  non-polymer 2 2 36 ? ? ? 
PRD_002548 C18 C18 C 0 1 N N R 9.041  32.095 -6.053  -4.194 1.080  -0.809 BNX 3 C1  non-polymer 2 2 37 ? ? ? 
PRD_002548 O19 O19 O 0 1 N Y N 8.529  31.455 -5.016  -3.697 2.419  -0.751 BNX 3 O1  non-polymer 2 2 38 ? ? ? 
PRD_002548 H1  H1  H 0 1 N N N 3.331  38.147 -6.809  0.930  -1.020 0.916  GLC 1 H1  polymer     1 1 39 ? ? ? 
PRD_002548 H2  H2  H 0 1 N N N 2.145  38.866 -8.821  1.299  -3.387 0.329  GLC 1 H2  polymer     1 1 40 ? ? ? 
PRD_002548 H3  H3  H 0 1 N N N 4.857  39.909 -9.756  4.262  -2.649 0.374  GLC 1 H3  polymer     1 1 41 ? ? ? 
PRD_002548 H4  H4  H 0 1 N N N 2.255  41.397 -9.145  2.453  -3.496 -1.937 GLC 1 H4  polymer     1 1 42 ? ? ? 
PRD_002548 H5  H5  H 0 1 N N N 4.865  41.401 -7.561  3.784  -0.817 -1.322 GLC 1 H5  polymer     1 1 43 ? ? ? 
PRD_002548 H6  H6  H 0 1 N N N 3.437  42.523 -5.846  3.611  -1.439 -3.750 GLC 1 H61 polymer     1 1 44 ? ? ? 
PRD_002548 H7  H7  H 0 1 N N N 3.680  43.488 -7.342  1.855  -1.634 -3.540 GLC 1 H62 polymer     1 1 45 ? ? ? 
PRD_002548 H8  H8  H 0 1 N Y N 3.369  37.485 -10.258 1.517  -2.763 2.627  GLC 1 HO2 polymer     1 1 46 ? ? ? 
PRD_002548 H9  H9  H 0 1 N Y N 3.463  40.521 -11.551 3.736  -4.875 1.074  GLC 1 HO3 polymer     1 1 47 ? ? ? 
PRD_002548 H10 H10 H 0 1 N Y N 3.733  43.191 -9.411  4.747  -4.142 -2.126 GLC 1 HO4 polymer     1 1 48 ? ? ? 
PRD_002548 H11 H11 H 0 1 N Y N 1.454  43.429 -6.662  2.423  0.564  -4.281 GLC 1 HO6 polymer     1 1 49 ? ? ? 
PRD_002548 H12 H12 H 0 1 N N N 5.026  36.359 -6.774  1.403  0.703  2.690  FRU 2 H11 polymer     1 1 50 ? ? ? 
PRD_002548 H13 H13 H 0 1 N N N 6.538  36.769 -7.653  1.263  2.251  1.823  FRU 2 H12 polymer     1 1 51 ? ? ? 
PRD_002548 H14 H14 H 0 1 N N N 7.790  38.488 -5.400  3.497  2.173  2.518  FRU 2 H3  polymer     1 1 52 ? ? ? 
PRD_002548 H15 H15 H 0 1 N N N 5.987  40.974 -5.609  5.234  2.170  0.044  FRU 2 H4  polymer     1 1 53 ? ? ? 
PRD_002548 H16 H16 H 0 1 N N N 6.143  38.922 -3.357  2.427  3.413  -0.003 FRU 2 H5  polymer     1 1 54 ? ? ? 
PRD_002548 H17 H17 H 0 1 N N N 4.800  41.019 -3.076  4.182  4.012  -1.749 FRU 2 H61 polymer     1 1 55 ? ? ? 
PRD_002548 H18 H18 H 0 1 N N N 3.798  40.497 -4.473  4.214  2.296  -2.219 FRU 2 H62 polymer     1 1 56 ? ? ? 
PRD_002548 H19 H19 H 0 1 N Y N 8.498  40.175 -6.836  5.636  1.109  2.461  FRU 2 HO3 polymer     1 1 57 ? ? ? 
PRD_002548 H20 H20 H 0 1 N Y N 7.163  41.485 -3.658  5.021  4.508  0.485  FRU 2 HO4 polymer     1 1 58 ? ? ? 
PRD_002548 H21 H21 H 0 1 N Y N 2.858  39.985 -2.452  2.661  3.549  -3.532 FRU 2 HO6 polymer     1 1 59 ? ? ? 
PRD_002548 H22 H22 H 0 1 N N N 6.467  34.168 -3.358  -1.269 -0.999 2.707  BNX 3 H2A non-polymer 2 2 60 ? ? ? 
PRD_002548 H23 H23 H 0 1 N N N 9.267  34.092 -5.226  -3.937 0.770  1.309  BNX 3 H2  non-polymer 2 2 61 ? ? ? 
PRD_002548 H24 H24 H 0 1 N N N 9.091  33.733 -8.269  -3.907 -1.643 -0.563 BNX 3 H3  non-polymer 2 2 62 ? ? ? 
PRD_002548 H25 H25 H 0 1 N Y N 8.596  35.835 -7.370  -4.127 -2.772 1.531  BNX 3 HO3 non-polymer 2 2 63 ? ? ? 
PRD_002548 H26 H26 H 0 1 N N N 11.550 34.096 -6.476  -6.096 -0.580 1.284  BNX 3 H4  non-polymer 2 2 64 ? ? ? 
PRD_002548 H27 H27 H 0 1 N Y N 11.641 35.103 -8.595  -7.290 -2.372 0.250  BNX 3 HO4 non-polymer 2 2 65 ? ? ? 
PRD_002548 H28 H28 H 0 1 N N N 10.504 31.776 -8.190  -5.931 -0.678 -1.763 BNX 3 H5  non-polymer 2 2 66 ? ? ? 
PRD_002548 H29 H29 H 0 1 N N N 12.913 31.690 -8.288  -8.208 -1.035 -0.765 BNX 3 H61 non-polymer 2 2 67 ? ? ? 
PRD_002548 H30 H30 H 0 1 N N N 12.356 30.482 -7.081  -8.038 0.516  0.092  BNX 3 H62 non-polymer 2 2 68 ? ? ? 
PRD_002548 H31 H31 H 0 1 N Y N 14.126 31.742 -6.340  -9.147 0.776  -2.008 BNX 3 HO6 non-polymer 2 2 69 ? ? ? 
PRD_002548 H32 H32 H 0 1 N N N 8.587  31.692 -6.971  -3.871 0.612  -1.739 BNX 3 H1  non-polymer 2 2 70 ? ? ? 
PRD_002548 H33 H33 H 0 1 N Y N 7.601  31.647 -4.952  -4.002 2.983  -1.474 BNX 3 HO1 non-polymer 2 2 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002548 C1  C2  SING N N 1  
PRD_002548 C1  O1  SING N N 2  
PRD_002548 C1  O5  SING N N 3  
PRD_002548 C1  H1  SING N N 4  
PRD_002548 C2  C3  SING N N 5  
PRD_002548 C2  O2  SING N N 6  
PRD_002548 C2  H2  SING N N 7  
PRD_002548 C3  C4  SING N N 8  
PRD_002548 C3  O3  SING N N 9  
PRD_002548 C3  H3  SING N N 10 
PRD_002548 C4  C5  SING N N 11 
PRD_002548 C4  O4  SING N N 12 
PRD_002548 C4  H4  SING N N 13 
PRD_002548 C5  C6  SING N N 14 
PRD_002548 C5  O5  SING N N 15 
PRD_002548 C5  H5  SING N N 16 
PRD_002548 C6  O6  SING N N 17 
PRD_002548 C6  H6  SING N N 18 
PRD_002548 C6  H7  SING N N 19 
PRD_002548 O2  H8  SING N N 20 
PRD_002548 O3  H9  SING N N 21 
PRD_002548 O4  H10 SING N N 22 
PRD_002548 O6  H11 SING N N 23 
PRD_002548 C7  C8  SING N N 24 
PRD_002548 C7  O7  SING N N 25 
PRD_002548 C7  H12 SING N N 26 
PRD_002548 C7  H13 SING N N 27 
PRD_002548 C8  C9  SING N N 28 
PRD_002548 C8  O10 SING N N 29 
PRD_002548 C9  C10 SING N N 30 
PRD_002548 C9  O8  SING N N 31 
PRD_002548 C9  H14 SING N N 32 
PRD_002548 C10 C11 SING N N 33 
PRD_002548 C10 O9  SING N N 34 
PRD_002548 C10 H15 SING N N 35 
PRD_002548 C11 C12 SING N N 36 
PRD_002548 C11 O10 SING N N 37 
PRD_002548 C11 H16 SING N N 38 
PRD_002548 C12 O11 SING N N 39 
PRD_002548 C12 H17 SING N N 40 
PRD_002548 C12 H18 SING N N 41 
PRD_002548 O8  H19 SING N N 42 
PRD_002548 O9  H20 SING N N 43 
PRD_002548 O11 H21 SING N N 44 
PRD_002548 C17 O17 SING N N 45 
PRD_002548 C17 C16 SING N N 46 
PRD_002548 C16 O18 SING N N 47 
PRD_002548 C16 C15 SING N N 48 
PRD_002548 O18 C18 SING N N 49 
PRD_002548 C18 O19 SING N N 50 
PRD_002548 C18 C13 SING N N 51 
PRD_002548 O16 C15 SING N N 52 
PRD_002548 C15 C14 SING N N 53 
PRD_002548 C14 C13 SING N N 54 
PRD_002548 C14 O15 SING N N 55 
PRD_002548 C13 O14 SING N N 56 
PRD_002548 O14 P1  SING N N 57 
PRD_002548 P1  O12 DOUB N N 58 
PRD_002548 P1  O13 SING N N 59 
PRD_002548 O13 H22 SING N N 60 
PRD_002548 C13 H23 SING N N 61 
PRD_002548 C14 H24 SING N N 62 
PRD_002548 O15 H25 SING N N 63 
PRD_002548 C15 H26 SING N N 64 
PRD_002548 O16 H27 SING N N 65 
PRD_002548 C16 H28 SING N N 66 
PRD_002548 C17 H29 SING N N 67 
PRD_002548 C17 H30 SING N N 68 
PRD_002548 O17 H31 SING N N 69 
PRD_002548 C18 H32 SING N N 70 
PRD_002548 O19 H33 SING N N 71 
PRD_002548 O1  C8  SING N N 72 
PRD_002548 O7  P1  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002548 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O)[C@@H](O[P](O)(=O)OC[C@]2(O[C@H](CO)[C@@H](O)[C@@H]2O)O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H]1O"         
PRD_002548 SMILES           CACTVS               3.385 "OC[CH]1O[CH](O)[CH](O[P](O)(=O)OC[C]2(O[CH](CO)[CH](O)[CH]2O)O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH]1O"                             
PRD_002548 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)OP(=O)(O)OC[C@@]2([C@H]([C@@H]([C@H](O2)CO)O)O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O)O" 
PRD_002548 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)O)OP(=O)(O)OCC2(C(C(C(O2)CO)O)O)OC3C(C(C(C(O3)CO)O)O)O)O)O)O"                                                                
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002548 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S},3~{S},4~{S},5~{R})-5-(hydroxymethyl)-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxolan-2-yl]methyl [(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate" 
# 
