data_PRDCC_000559
# 
_chem_comp.id                                    PRD_000559 
_chem_comp.name                                  Chymostatin 
_chem_comp.formula                               "C22 H32 N6 O5" 
_chem_comp.formula_weight                        460.527 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000559 N1  N1  N 0 1 N N N 23.456 12.967 3.514  -4.231 -3.417 0.470  CSI 1 NE   polymer 1 1 1  ? ? ? 
PRD_000559 C1  C1  C 0 1 N N N 23.162 11.702 4.046  -3.181 -3.023 -0.345 CSI 1 CD2  polymer 1 1 2  ? ? ? 
PRD_000559 C2  C2  C 0 1 N N N 23.822 14.092 4.440  -4.388 -2.719 1.757  CSI 1 CD1  polymer 1 1 3  ? ? ? 
PRD_000559 N2  N2  N 0 1 N N N 22.655 10.851 3.114  -2.438 -3.890 -0.973 CSI 1 NH   polymer 1 1 4  ? ? ? 
PRD_000559 C3  C3  C 0 1 N N R 22.944 12.570 6.120  -3.045 -0.856 0.773  CSI 1 CB   polymer 1 1 5  ? ? ? 
PRD_000559 C4  C4  C 0 1 N N N 24.097 13.567 5.844  -4.346 -1.208 1.503  CSI 1 CG1  polymer 1 1 6  ? ? ? 
PRD_000559 N3  N3  N 0 1 N N N 22.746 11.472 5.323  -2.964 -1.658 -0.458 CSI 1 NG2  polymer 1 1 7  ? ? ? 
PRD_000559 N4  N4  N 0 1 N N N 22.026 11.255 7.999  -4.131 0.911  -0.524 CSI 1 N    polymer 1 1 8  ? ? ? 
PRD_000559 C5  C5  C 0 1 N N S 23.253 11.858 7.471  -3.043 0.632  0.417  CSI 1 CA   polymer 1 1 9  ? ? ? 
PRD_000559 C6  C6  C 0 1 N N N 23.874 12.790 8.500  -1.725 0.995  -0.217 CSI 1 C    polymer 1 1 10 ? ? ? 
PRD_000559 O1  O1  O 0 1 N N N 25.052 13.138 8.438  -1.638 1.091  -1.423 CSI 1 O    polymer 1 1 11 ? ? ? 
PRD_000559 O2  O2  O 0 1 N N N ?      ?      ?      -4.906 2.555  0.751  CSI 1 O3   polymer 1 1 12 ? ? ? 
PRD_000559 O3  O3  O 0 1 N Y N ?      ?      ?      -6.094 2.054  -1.056 CSI 1 O4   polymer 1 1 13 ? ? ? 
PRD_000559 C7  C7  C 0 1 N N N ?      ?      ?      -5.039 1.865  -0.241 CSI 1 C7   polymer 1 1 14 ? ? ? 
PRD_000559 N5  N5  N 0 1 N N N 23.061 13.180 9.481  -0.642 1.213  0.556  LEU 2 N    polymer 1 1 15 ? ? ? 
PRD_000559 C8  C8  C 0 1 N N S 23.498 14.028 10.583 0.662  1.459  -0.063 LEU 2 CA   polymer 1 1 16 ? ? ? 
PRD_000559 C9  C9  C 0 1 N N N 24.470 13.272 11.481 1.754  0.993  0.865  LEU 2 C    polymer 1 1 17 ? ? ? 
PRD_000559 O4  O4  O 0 1 N N N 24.198 12.147 11.906 1.533  0.877  2.051  LEU 2 O    polymer 1 1 18 ? ? ? 
PRD_000559 C10 C10 C 0 1 N N N 22.305 14.505 11.406 0.825  2.957  -0.332 LEU 2 CB   polymer 1 1 19 ? ? ? 
PRD_000559 C11 C11 C 0 1 N N N 21.581 15.794 11.034 2.160  3.206  -1.036 LEU 2 CG   polymer 1 1 20 ? ? ? 
PRD_000559 C12 C12 C 0 1 N N N 21.639 16.097 9.547  2.129  2.570  -2.428 LEU 2 CD1  polymer 1 1 21 ? ? ? 
PRD_000559 C13 C13 C 0 1 N N N 20.124 15.721 11.474 2.393  4.712  -1.169 LEU 2 CD2  polymer 1 1 22 ? ? ? 
PRD_000559 N6  N6  N 0 1 N N N 25.619 13.859 11.803 2.977  0.707  0.376  PHA 3 N    polymer 1 1 23 ? ? ? 
PRD_000559 C14 C14 C 0 1 N N S 26.525 13.147 12.705 4.002  0.138  1.255  PHA 3 CA   polymer 1 1 24 ? ? ? 
PRD_000559 C15 C15 C 0 1 N N N 26.473 13.758 14.102 4.713  1.250  1.983  PHA 3 C    polymer 1 1 25 ? ? ? 
PRD_000559 O5  O5  O 0 1 N N N 27.158 12.928 15.060 4.395  2.398  1.789  PHA 3 O    polymer 1 1 26 ? ? ? 
PRD_000559 C16 C16 C 0 1 N N N 27.936 13.172 12.130 5.012  -0.649 0.417  PHA 3 CB   polymer 1 1 27 ? ? ? 
PRD_000559 C17 C17 C 0 1 Y N N 28.205 12.026 11.163 4.326  -1.833 -0.214 PHA 3 CG   polymer 1 1 28 ? ? ? 
PRD_000559 C18 C18 C 0 1 Y N N 29.182 12.144 10.185 3.739  -1.709 -1.460 PHA 3 CD1  polymer 1 1 29 ? ? ? 
PRD_000559 C19 C19 C 0 1 Y N N 27.467 10.855 11.262 4.289  -3.045 0.450  PHA 3 CD2  polymer 1 1 30 ? ? ? 
PRD_000559 C20 C20 C 0 1 Y N N 29.424 11.097 9.310  3.110  -2.795 -2.039 PHA 3 CE1  polymer 1 1 31 ? ? ? 
PRD_000559 C21 C21 C 0 1 Y N N 27.707 9.809  10.387 3.660  -4.131 -0.130 PHA 3 CE2  polymer 1 1 32 ? ? ? 
PRD_000559 C22 C22 C 0 1 Y N N 28.685 9.928  9.409  3.068  -4.006 -1.372 PHA 3 CZ   polymer 1 1 33 ? ? ? 
PRD_000559 H1  H1  H 0 1 N N N 23.422 13.118 2.526  -4.841 -4.122 0.201  CSI 1 HE   polymer 1 1 34 ? ? ? 
PRD_000559 H2  H2  H 0 0 N N N 24.724 14.594 4.059  -5.345 -2.989 2.204  CSI 1 HD13 polymer 1 1 35 ? ? ? 
PRD_000559 H3  H3  H 0 0 N N N 22.991 14.812 4.480  -3.576 -3.001 2.427  CSI 1 HD12 polymer 1 1 36 ? ? ? 
PRD_000559 H4  H4  H 0 1 N N N 22.042 10.173 3.520  -1.709 -3.586 -1.538 CSI 1 HH   polymer 1 1 37 ? ? ? 
PRD_000559 H5  H5  H 0 1 N N N 22.012 13.142 6.237  -2.193 -1.082 1.414  CSI 1 HB   polymer 1 1 38 ? ? ? 
PRD_000559 H6  H6  H 0 0 N N N 25.070 13.056 5.884  -5.199 -0.918 0.889  CSI 1 HG13 polymer 1 1 39 ? ? ? 
PRD_000559 H7  H7  H 0 0 N N N 24.084 14.388 6.575  -4.385 -0.678 2.455  CSI 1 HG12 polymer 1 1 40 ? ? ? 
PRD_000559 H8  H8  H 0 1 N N N 22.347 10.611 5.639  -2.766 -1.248 -1.314 CSI 1 HG2  polymer 1 1 41 ? ? ? 
PRD_000559 H9  H9  H 0 1 N N N 22.041 11.287 8.998  -4.197 0.408  -1.351 CSI 1 H    polymer 1 1 42 ? ? ? 
PRD_000559 H10 H10 H 0 1 N N N 23.976 11.056 7.263  -3.185 1.223  1.322  CSI 1 HCA  polymer 1 1 43 ? ? ? 
PRD_000559 H11 H11 H 0 1 N Y N ?      ?      ?      -6.719 2.750  -0.811 CSI 1 H12  polymer 1 1 44 ? ? ? 
PRD_000559 H12 H12 H 0 1 N N N 22.108 12.877 9.460  -0.727 1.207  1.522  LEU 2 H    polymer 1 1 45 ? ? ? 
PRD_000559 H13 H13 H 0 1 N N N 24.015 14.911 10.178 0.727  0.912  -1.004 LEU 2 HA   polymer 1 1 46 ? ? ? 
PRD_000559 H14 H14 H 0 1 N N N 21.556 13.700 11.372 0.009  3.303  -0.966 LEU 2 HB2  polymer 1 1 47 ? ? ? 
PRD_000559 H15 H15 H 0 1 N N N 22.663 14.630 12.439 0.806  3.499  0.613  LEU 2 HB3  polymer 1 1 48 ? ? ? 
PRD_000559 H16 H16 H 0 1 N N N 22.061 16.624 11.573 2.967  2.763  -0.453 LEU 2 HG   polymer 1 1 49 ? ? ? 
PRD_000559 H17 H17 H 0 0 N N N 21.102 17.035 9.342  1.367  3.059  -3.034 LEU 2 HD11 polymer 1 1 50 ? ? ? 
PRD_000559 H18 H18 H 0 0 N N N 22.689 16.200 9.235  3.103  2.688  -2.903 LEU 2 HD12 polymer 1 1 51 ? ? ? 
PRD_000559 H19 H19 H 0 0 N N N 21.169 15.275 8.987  1.896  1.509  -2.337 LEU 2 HD13 polymer 1 1 52 ? ? ? 
PRD_000559 H20 H20 H 0 0 N N N 19.611 16.655 11.201 2.415  5.165  -0.178 LEU 2 HD21 polymer 1 1 53 ? ? ? 
PRD_000559 H21 H21 H 0 0 N N N 19.632 14.873 10.974 3.344  4.890  -1.671 LEU 2 HD22 polymer 1 1 54 ? ? ? 
PRD_000559 H22 H22 H 0 0 N N N 20.077 15.582 12.564 1.586  5.155  -1.753 LEU 2 HD23 polymer 1 1 55 ? ? ? 
PRD_000559 H23 H23 H 0 1 N N N 25.857 14.760 11.440 3.179  0.877  -0.557 PHA 3 H    polymer 1 1 56 ? ? ? 
PRD_000559 H24 H24 H 0 1 N N N 26.203 12.098 12.778 3.532  -0.528 1.978  PHA 3 HA   polymer 1 1 57 ? ? ? 
PRD_000559 H25 H25 H 0 1 N N N 25.986 14.692 14.342 5.505  1.019  2.680  PHA 3 HC   polymer 1 1 58 ? ? ? 
PRD_000559 H26 H26 H 0 1 N N N 28.080 14.123 11.596 5.417  -0.005 -0.363 PHA 3 HB2  polymer 1 1 59 ? ? ? 
PRD_000559 H27 H27 H 0 1 N N N 28.654 13.106 12.961 5.822  -0.998 1.058  PHA 3 HB3  polymer 1 1 60 ? ? ? 
PRD_000559 H28 H28 H 0 1 N N N 29.756 13.055 10.105 3.772  -0.763 -1.980 PHA 3 HD1  polymer 1 1 61 ? ? ? 
PRD_000559 H29 H29 H 0 1 N N N 26.705 10.759 12.022 4.752  -3.144 1.420  PHA 3 HD2  polymer 1 1 62 ? ? ? 
PRD_000559 H30 H30 H 0 1 N N N 30.187 11.191 8.552  2.651  -2.698 -3.011 PHA 3 HE1  polymer 1 1 63 ? ? ? 
PRD_000559 H31 H31 H 0 1 N N N 27.132 8.898  10.466 3.631  -5.078 0.389  PHA 3 HE2  polymer 1 1 64 ? ? ? 
PRD_000559 H32 H32 H 0 1 N N N 28.870 9.112  8.727  2.576  -4.854 -1.825 PHA 3 HZ   polymer 1 1 65 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000559 N1  C1  SING N N 1  
PRD_000559 N1  C2  SING N N 2  
PRD_000559 N1  H1  SING N N 3  
PRD_000559 C1  N2  DOUB N N 4  
PRD_000559 C1  N3  SING N N 5  
PRD_000559 C2  C4  SING N N 6  
PRD_000559 C2  H2  SING N N 7  
PRD_000559 C2  H3  SING N N 8  
PRD_000559 N2  H4  SING N N 9  
PRD_000559 C3  C4  SING N N 10 
PRD_000559 C3  N3  SING N N 11 
PRD_000559 C3  C5  SING N N 12 
PRD_000559 C3  H5  SING N N 13 
PRD_000559 C4  H6  SING N N 14 
PRD_000559 C4  H7  SING N N 15 
PRD_000559 N3  H8  SING N N 16 
PRD_000559 N4  C5  SING N N 17 
PRD_000559 N4  H9  SING N N 18 
PRD_000559 C5  C6  SING N N 19 
PRD_000559 C5  H10 SING N N 20 
PRD_000559 C6  O1  DOUB N N 21 
PRD_000559 C7  O2  DOUB N N 22 
PRD_000559 C7  O3  SING N N 23 
PRD_000559 O3  H11 SING N N 24 
PRD_000559 N4  C7  SING N N 25 
PRD_000559 N5  C8  SING N N 26 
PRD_000559 N5  H12 SING N N 27 
PRD_000559 C8  C9  SING N N 28 
PRD_000559 C8  C10 SING N N 29 
PRD_000559 C8  H13 SING N N 30 
PRD_000559 C9  O4  DOUB N N 31 
PRD_000559 C10 C11 SING N N 32 
PRD_000559 C10 H14 SING N N 33 
PRD_000559 C10 H15 SING N N 34 
PRD_000559 C11 C12 SING N N 35 
PRD_000559 C11 C13 SING N N 36 
PRD_000559 C11 H16 SING N N 37 
PRD_000559 C12 H17 SING N N 38 
PRD_000559 C12 H18 SING N N 39 
PRD_000559 C12 H19 SING N N 40 
PRD_000559 C13 H20 SING N N 41 
PRD_000559 C13 H21 SING N N 42 
PRD_000559 C13 H22 SING N N 43 
PRD_000559 N6  C14 SING N N 44 
PRD_000559 N6  H23 SING N N 45 
PRD_000559 C14 C15 SING N N 46 
PRD_000559 C14 C16 SING N N 47 
PRD_000559 C14 H24 SING N N 48 
PRD_000559 C15 O5  DOUB N N 49 
PRD_000559 C15 H25 SING N N 50 
PRD_000559 C16 C17 SING N N 51 
PRD_000559 C16 H26 SING N N 52 
PRD_000559 C16 H27 SING N N 53 
PRD_000559 C17 C18 DOUB Y N 54 
PRD_000559 C17 C19 SING Y N 55 
PRD_000559 C18 C20 SING Y N 56 
PRD_000559 C18 H28 SING N N 57 
PRD_000559 C19 C21 DOUB Y N 58 
PRD_000559 C19 H29 SING N N 59 
PRD_000559 C20 C22 DOUB Y N 60 
PRD_000559 C20 H30 SING N N 61 
PRD_000559 C21 C22 SING Y N 62 
PRD_000559 C21 H31 SING N N 63 
PRD_000559 C22 H32 SING N N 64 
PRD_000559 C6  N5  SING N N 65 
PRD_000559 C9  N6  SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000559 SMILES           ACDLabs              12.01 "O=CC(NC(=O)C(NC(=O)C(NC(=O)O)C1NC(=[N@H])NCC1)CC(C)C)Cc2ccccc2"                                                                                                                                                         
PRD_000559 InChI            InChI                1.03  "InChI=1S/C22H32N6O5/c1-13(2)10-17(19(30)25-15(12-29)11-14-6-4-3-5-7-14)26-20(31)18(28-22(32)33)16-8-9-24-21(23)27-16/h3-7,12-13,15-18,28H,8-11H2,1-2H3,(H,25,30)(H,26,31)(H,32,33)(H3,23,24,27)/t15-,16+,17+,18-/m0/s1" 
PRD_000559 InChIKey         InChI                1.03  SXZJURLAUWIDJC-MLHJIOFPSA-N                                                                                                                                                                                              
PRD_000559 SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](NC(=O)[C@@H](NC(O)=O)[C@H]1CCNC(=N)N1)C(=O)N[C@@H](Cc2ccccc2)C=O"                                                                                                                                           
PRD_000559 SMILES           CACTVS               3.370 "CC(C)C[CH](NC(=O)[CH](NC(O)=O)[CH]1CCNC(=N)N1)C(=O)N[CH](Cc2ccccc2)C=O"                                                                                                                                                 
PRD_000559 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)N[C@@H](Cc1ccccc1)C=O)NC(=O)[C@H]([C@H]2CCNC(=N)N2)NC(=O)O"                                                                                                                                           
PRD_000559 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NC(Cc1ccccc1)C=O)NC(=O)C(C2CCNC(=N)N2)NC(=O)O"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000559 "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-{(2R)-2-(carboxyamino)-2-[(2Z,4R)-2-iminohexahydropyrimidin-4-yl]acetyl}-N-[(2S)-1-oxo-3-phenylpropan-2-yl]-L-leucinamide"                                                              
PRD_000559 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1S)-1-[(4R)-2-azanylidene-1,3-diazinan-4-yl]-2-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-phenyl-propan-2-yl]amino]pentan-2-yl]amino]-2-oxidanylidene-ethyl]carbamic acid" 
# 
