data_PRDCC_900119
# 
_chem_comp.id                                    PRD_900119 
_chem_comp.name                                  "Lewis X antigen, beta anomer" 
_chem_comp.type                                  saccharide 
_chem_comp.formula                               "C20 H35 N O15" 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.formula_weight                        529.490 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_900119 C1  C1  C 0 1 N N R 57.278 21.894 15.780 3.524  1.881  -0.308 NAG 1 C1  polymer 1 1 1  ? ? ? 
PRD_900119 C2  C2  C 0 1 N N R 55.928 21.178 15.817 2.916  0.570  0.199  NAG 1 C2  polymer 1 1 2  ? ? ? 
PRD_900119 C3  C3  C 0 1 N N R 55.018 21.844 16.850 1.536  0.378  -0.437 NAG 1 C3  polymer 1 1 3  ? ? ? 
PRD_900119 C4  C4  C 0 1 N N S 55.719 21.857 18.210 0.660  1.591  -0.107 NAG 1 C4  polymer 1 1 4  ? ? ? 
PRD_900119 C5  C5  C 0 1 N N R 57.085 22.536 18.082 1.356  2.862  -0.602 NAG 1 C5  polymer 1 1 5  ? ? ? 
PRD_900119 C6  C6  C 0 1 N N N 57.869 22.494 19.377 0.516  4.083  -0.223 NAG 1 C6  polymer 1 1 6  ? ? ? 
PRD_900119 C7  C7  C 0 1 N N N 54.758 20.122 14.001 4.829  -0.881 0.614  NAG 1 C7  polymer 1 1 7  ? ? ? 
PRD_900119 C8  C8  C 0 1 N N N 54.545 20.088 12.496 5.724  -2.032 0.233  NAG 1 C8  polymer 1 1 8  ? ? ? 
PRD_900119 N1  N1  N 0 1 N N N 55.317 21.217 14.505 3.786  -0.549 -0.172 NAG 1 N2  polymer 1 1 9  ? ? ? 
PRD_900119 O1  O1  O 0 1 N Y N 58.118 21.234 14.899 4.788  2.095  0.324  NAG 1 O1  polymer 1 1 10 ? ? ? 
PRD_900119 O2  O2  O 0 1 N N N 53.780 21.116 16.947 0.929  -0.806 0.086  NAG 1 O3  polymer 1 1 11 ? ? ? 
PRD_900119 O3  O3  O 0 1 N N N 54.914 22.561 19.170 -0.606 1.457  -0.756 NAG 1 O4  polymer 1 1 12 ? ? ? 
PRD_900119 O4  O4  O 0 1 N N N 57.882 21.860 17.080 2.646  2.964  0.004  NAG 1 O5  polymer 1 1 13 ? ? ? 
PRD_900119 O5  O5  O 0 1 N N N 58.013 21.159 19.841 1.100  5.258  -0.790 NAG 1 O6  polymer 1 1 14 ? ? ? 
PRD_900119 O6  O6  O 0 1 N N N 54.412 19.161 14.697 5.048  -0.253 1.628  NAG 1 O7  polymer 1 1 15 ? ? ? 
PRD_900119 C9  C9  C 0 1 N N R 52.671 21.757 16.385 1.222  -1.988 -0.661 FUC 2 C1  polymer 1 1 16 ? ? ? 
PRD_900119 C10 C10 C 0 1 N N S 51.543 20.742 16.162 0.629  -3.204 0.054  FUC 2 C2  polymer 1 1 17 ? ? ? 
PRD_900119 C11 C11 C 0 1 N N R 50.942 20.318 17.499 -0.895 -3.058 0.115  FUC 2 C3  polymer 1 1 18 ? ? ? 
PRD_900119 C12 C12 C 0 1 N N S 50.490 21.548 18.284 -1.439 -2.899 -1.309 FUC 2 C4  polymer 1 1 19 ? ? ? 
PRD_900119 C13 C13 C 0 1 N N S 51.669 22.507 18.465 -0.765 -1.694 -1.971 FUC 2 C5  polymer 1 1 20 ? ? ? 
PRD_900119 C14 C14 C 0 1 N N N 51.263 23.795 19.167 -1.259 -1.564 -3.414 FUC 2 C6  polymer 1 1 21 ? ? ? 
PRD_900119 O7  O7  O 0 1 N N N 52.053 19.597 15.494 1.154  -3.281 1.381  FUC 2 O2  polymer 1 1 22 ? ? ? 
PRD_900119 O8  O8  O 0 1 N N N 49.842 19.451 17.276 -1.463 -4.224 0.715  FUC 2 O3  polymer 1 1 23 ? ? ? 
PRD_900119 O9  O9  O 0 1 N N N 49.445 22.205 17.583 -1.156 -4.079 -2.063 FUC 2 O4  polymer 1 1 24 ? ? ? 
PRD_900119 O10 O10 O 0 1 N N N 52.215 22.868 17.174 0.651  -1.880 -1.967 FUC 2 O5  polymer 1 1 25 ? ? ? 
PRD_900119 C15 C15 C 0 1 N N R 54.744 21.945 20.398 -1.726 1.616  0.118  GAL 3 C1  polymer 1 1 26 ? ? ? 
PRD_900119 C16 C16 C 0 1 N N R 54.230 22.968 21.406 -3.020 1.582  -0.700 GAL 3 C2  polymer 1 1 27 ? ? ? 
PRD_900119 C17 C17 C 0 1 N N S 53.925 22.294 22.746 -4.217 1.693  0.249  GAL 3 C3  polymer 1 1 28 ? ? ? 
PRD_900119 C18 C18 C 0 1 N N R 53.009 21.081 22.551 -4.148 0.558  1.275  GAL 3 C4  polymer 1 1 29 ? ? ? 
PRD_900119 C19 C19 C 0 1 N N R 53.573 20.148 21.468 -2.811 0.631  2.017  GAL 3 C5  polymer 1 1 30 ? ? ? 
PRD_900119 C20 C20 C 0 1 N N N 52.632 19.003 21.144 -2.709 -0.535 3.002  GAL 3 C6  polymer 1 1 31 ? ? ? 
PRD_900119 O11 O11 O 0 1 N N N 55.211 23.974 21.598 -3.034 2.678  -1.617 GAL 3 O2  polymer 1 1 32 ? ? ? 
PRD_900119 O12 O12 O 0 1 N N N 53.288 23.228 23.600 -5.431 1.588  -0.498 GAL 3 O3  polymer 1 1 33 ? ? ? 
PRD_900119 O13 O13 O 0 1 N N N 51.713 21.519 22.182 -4.254 -0.700 0.605  GAL 3 O4  polymer 1 1 34 ? ? ? 
PRD_900119 O14 O14 O 0 1 N N N 53.791 20.881 20.241 -1.740 0.553  1.074  GAL 3 O5  polymer 1 1 35 ? ? ? 
PRD_900119 O15 O15 O 0 1 N N N 53.294 17.990 20.399 -1.515 -0.402 3.776  GAL 3 O6  polymer 1 1 36 ? ? ? 
PRD_900119 H1  H1  H 0 1 N N N 57.119 22.935 15.464 3.662  1.824  -1.387 NAG 1 H1  polymer 1 1 37 ? ? ? 
PRD_900119 H2  H2  H 0 1 N N N 56.093 20.133 16.118 2.815  0.611  1.283  NAG 1 H2  polymer 1 1 38 ? ? ? 
PRD_900119 H3  H3  H 0 1 N N N 54.824 22.881 16.539 1.641  0.288  -1.518 NAG 1 H3  polymer 1 1 39 ? ? ? 
PRD_900119 H4  H4  H 0 1 N N N 55.871 20.818 18.538 0.514  1.652  0.971  NAG 1 H4  polymer 1 1 40 ? ? ? 
PRD_900119 H5  H5  H 0 1 N N N 56.932 23.586 17.791 1.465  2.818  -1.685 NAG 1 H5  polymer 1 1 41 ? ? ? 
PRD_900119 H6  H6  H 0 1 N N N 58.866 22.926 19.208 -0.497 3.961  -0.605 NAG 1 H61 polymer 1 1 42 ? ? ? 
PRD_900119 H7  H7  H 0 1 N N N 57.338 23.084 20.138 0.486  4.181  0.863  NAG 1 H62 polymer 1 1 43 ? ? ? 
PRD_900119 H8  H8  H 0 1 N N N 54.074 19.135 12.213 5.373  -2.470 -0.701 NAG 1 H81 polymer 1 1 44 ? ? ? 
PRD_900119 H9  H9  H 0 1 N N N 53.892 20.922 12.199 6.744  -1.671 0.105  NAG 1 H82 polymer 1 1 45 ? ? ? 
PRD_900119 H10 H10 H 0 1 N N N 55.515 20.183 11.986 5.701  -2.786 1.020  NAG 1 H83 polymer 1 1 46 ? ? ? 
PRD_900119 H11 H11 H 0 1 N N N 55.316 22.067 13.979 3.611  -1.051 -0.983 NAG 1 HN2 polymer 1 1 47 ? ? ? 
PRD_900119 H12 H12 H 0 1 N Y N 58.959 21.675 14.872 5.232  2.909  0.050  NAG 1 HO1 polymer 1 1 48 ? ? ? 
PRD_900119 H13 H13 H 0 1 N Y N 58.507 21.157 20.653 0.619  6.072  -0.590 NAG 1 HO6 polymer 1 1 49 ? ? ? 
PRD_900119 H14 H14 H 0 1 N N N 52.955 22.139 15.393 2.302  -2.106 -0.745 FUC 2 H1  polymer 1 1 50 ? ? ? 
PRD_900119 H15 H15 H 0 1 N N N 50.757 21.217 15.556 0.886  -4.111 -0.494 FUC 2 H2  polymer 1 1 51 ? ? ? 
PRD_900119 H16 H16 H 0 1 N N N 51.717 19.799 18.081 -1.154 -2.179 0.705  FUC 2 H3  polymer 1 1 52 ? ? ? 
PRD_900119 H17 H17 H 0 1 N N N 50.140 21.226 19.276 -2.516 -2.739 -1.271 FUC 2 H4  polymer 1 1 53 ? ? ? 
PRD_900119 H18 H18 H 0 1 N N N 52.441 22.005 19.067 -1.015 -0.788 -1.418 FUC 2 H5  polymer 1 1 54 ? ? ? 
PRD_900119 H19 H19 H 0 1 N N N 52.142 24.448 19.273 -2.339 -1.423 -3.417 FUC 2 H61 polymer 1 1 55 ? ? ? 
PRD_900119 H20 H20 H 0 1 N N N 50.493 24.309 18.573 -0.779 -0.706 -3.886 FUC 2 H62 polymer 1 1 56 ? ? ? 
PRD_900119 H21 H21 H 0 1 N N N 50.860 23.558 20.163 -1.008 -2.469 -3.967 FUC 2 H63 polymer 1 1 57 ? ? ? 
PRD_900119 H22 H22 H 0 1 N Y N 52.979 19.718 15.319 2.116  -3.370 1.418  FUC 2 HO2 polymer 1 1 58 ? ? ? 
PRD_900119 H23 H23 H 0 1 N Y N 49.470 19.189 18.110 -1.157 -4.390 1.618  FUC 2 HO3 polymer 1 1 59 ? ? ? 
PRD_900119 H24 H24 H 0 1 N Y N 49.166 22.969 18.073 -1.472 -4.047 -2.976 FUC 2 HO4 polymer 1 1 60 ? ? ? 
PRD_900119 H25 H25 H 0 1 N N N 55.699 21.540 20.764 -1.649 2.571  0.637  GAL 3 H1  polymer 1 1 61 ? ? ? 
PRD_900119 H26 H26 H 0 1 N N N 53.302 23.412 21.016 -3.078 0.643  -1.251 GAL 3 H2  polymer 1 1 62 ? ? ? 
PRD_900119 H27 H27 H 0 1 N N N 54.871 21.953 23.192 -4.187 2.653  0.765  GAL 3 H3  polymer 1 1 63 ? ? ? 
PRD_900119 H28 H28 H 0 1 N N N 52.962 20.524 23.499 -4.966 0.661  1.988  GAL 3 H4  polymer 1 1 64 ? ? ? 
PRD_900119 H29 H29 H 0 1 N N N 54.526 19.732 21.827 -2.748 1.574  2.561  GAL 3 H5  polymer 1 1 65 ? ? ? 
PRD_900119 H30 H30 H 0 1 N N N 52.256 18.570 22.083 -3.574 -0.527 3.665  GAL 3 H61 polymer 1 1 66 ? ? ? 
PRD_900119 H31 H31 H 0 1 N N N 51.787 19.388 20.554 -2.681 -1.475 2.451  GAL 3 H62 polymer 1 1 67 ? ? ? 
PRD_900119 H32 H32 H 0 1 N Y N 54.892 24.612 22.226 -2.300 2.674  -2.246 GAL 3 HO2 polymer 1 1 68 ? ? ? 
PRD_900119 H33 H33 H 0 1 N Y N 53.096 22.816 24.434 -5.538 2.273  -1.173 GAL 3 HO3 polymer 1 1 69 ? ? ? 
PRD_900119 H34 H34 H 0 1 N Y N 51.146 20.766 22.061 -5.077 -0.813 0.109  GAL 3 HO4 polymer 1 1 70 ? ? ? 
PRD_900119 H35 H35 H 0 1 N Y N 52.685 17.286 20.209 -1.384 -1.108 4.423  GAL 3 HO6 polymer 1 1 71 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_900119 C1  C2  SING N N 1  
PRD_900119 C1  O1  SING N N 2  
PRD_900119 C1  O4  SING N N 3  
PRD_900119 C1  H1  SING N N 4  
PRD_900119 C2  C3  SING N N 5  
PRD_900119 C2  N1  SING N N 6  
PRD_900119 C2  H2  SING N N 7  
PRD_900119 C3  C4  SING N N 8  
PRD_900119 C3  O2  SING N N 9  
PRD_900119 C3  H3  SING N N 10 
PRD_900119 C4  C5  SING N N 11 
PRD_900119 C4  O3  SING N N 12 
PRD_900119 C4  H4  SING N N 13 
PRD_900119 C5  C6  SING N N 14 
PRD_900119 C5  O4  SING N N 15 
PRD_900119 C5  H5  SING N N 16 
PRD_900119 C6  O5  SING N N 17 
PRD_900119 C6  H6  SING N N 18 
PRD_900119 C6  H7  SING N N 19 
PRD_900119 C7  C8  SING N N 20 
PRD_900119 C7  N1  SING N N 21 
PRD_900119 C7  O6  DOUB N N 22 
PRD_900119 C8  H8  SING N N 23 
PRD_900119 C8  H9  SING N N 24 
PRD_900119 C8  H10 SING N N 25 
PRD_900119 N1  H11 SING N N 26 
PRD_900119 O1  H12 SING N N 27 
PRD_900119 O5  H13 SING N N 28 
PRD_900119 C9  C10 SING N N 29 
PRD_900119 C9  O10 SING N N 30 
PRD_900119 C9  H14 SING N N 31 
PRD_900119 C10 C11 SING N N 32 
PRD_900119 C10 O7  SING N N 33 
PRD_900119 C10 H15 SING N N 34 
PRD_900119 C11 C12 SING N N 35 
PRD_900119 C11 O8  SING N N 36 
PRD_900119 C11 H16 SING N N 37 
PRD_900119 C12 C13 SING N N 38 
PRD_900119 C12 O9  SING N N 39 
PRD_900119 C12 H17 SING N N 40 
PRD_900119 C13 C14 SING N N 41 
PRD_900119 C13 O10 SING N N 42 
PRD_900119 C13 H18 SING N N 43 
PRD_900119 C14 H19 SING N N 44 
PRD_900119 C14 H20 SING N N 45 
PRD_900119 C14 H21 SING N N 46 
PRD_900119 O7  H22 SING N N 47 
PRD_900119 O8  H23 SING N N 48 
PRD_900119 O9  H24 SING N N 49 
PRD_900119 C15 C16 SING N N 50 
PRD_900119 C15 O14 SING N N 51 
PRD_900119 C15 H25 SING N N 52 
PRD_900119 C16 C17 SING N N 53 
PRD_900119 C16 O11 SING N N 54 
PRD_900119 C16 H26 SING N N 55 
PRD_900119 C17 C18 SING N N 56 
PRD_900119 C17 O12 SING N N 57 
PRD_900119 C17 H27 SING N N 58 
PRD_900119 C18 C19 SING N N 59 
PRD_900119 C18 O13 SING N N 60 
PRD_900119 C18 H28 SING N N 61 
PRD_900119 C19 C20 SING N N 62 
PRD_900119 C19 O14 SING N N 63 
PRD_900119 C19 H29 SING N N 64 
PRD_900119 C20 O15 SING N N 65 
PRD_900119 C20 H30 SING N N 66 
PRD_900119 C20 H31 SING N N 67 
PRD_900119 O11 H32 SING N N 68 
PRD_900119 O12 H33 SING N N 69 
PRD_900119 O13 H34 SING N N 70 
PRD_900119 O15 H35 SING N N 71 
PRD_900119 O2  C9  SING N N 72 
PRD_900119 O3  C15 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_900119 InChI            InChI                1.06  "InChI=1S/C20H35NO15/c1-5-10(25)12(27)14(29)19(32-5)36-17-9(21-6(2)24)18(31)33-8(4-23)16(17)35-20-15(30)13(28)11(26)7(3-22)34-20/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13-,14-,15+,16+,17+,18+,19-,20-/m0/s1" 
PRD_900119 InChIKey         InChI                1.06  HBBOZFUQJDYASD-LPHOMBEVSA-N                                                                                                                                                                                                                 
PRD_900119 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](NC(C)=O)[C@H](O)O[C@H](CO)[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O"                                                                                                        
PRD_900119 SMILES           CACTVS               3.385 "C[CH]1O[CH](O[CH]2[CH](NC(C)=O)[CH](O)O[CH](CO)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]1O"                                                                                                                              
PRD_900119 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O"                                                                                                     
PRD_900119 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(OC(C2OC3C(C(C(C(O3)CO)O)O)O)CO)O)NC(=O)C)O)O)O"                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           PRD_900119 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris
(oxidanyl)oxan-2-yl]oxy-4-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-oxan-3-
yl]ethanamide
;
# 
